4JAW
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![BU of 4jaw by Molmil](/molmil-images/mine/4jaw) | Crystal Structure of Lacto-N-Biosidase from Bifidobacterium bifidum complexed with LNB-thiazoline | 分子名称: | 3AR,5R,6S,7R,7AR-5-HYDROXYMETHYL-2-METHYL-5,6,7,7A-TETRAHYDRO-3AH-PYRANO[3,2-D]THIAZOLE-6,7-DIOL, Lacto-N-biosidase, SULFATE ION, ... | 著者 | Ito, T, Katayama, T, Stubbs, K.A, Fushinobu, S. | 登録日 | 2013-02-19 | 公開日 | 2013-03-20 | 最終更新日 | 2023-11-08 | 実験手法 | X-RAY DIFFRACTION (1.8 Å) | 主引用文献 | Crystal structures of a glycoside hydrolase family 20 lacto-N-biosidase from Bifidobacterium bifidum J.Biol.Chem., 288, 2013
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7WDT
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![BU of 7wdt by Molmil](/molmil-images/mine/7wdt) | 6-sulfo-beta-D-N-acetylglucosaminidase from Bifidobacterium bifidum in complex with GlcNAc-6S | 分子名称: | 2-acetamido-2-deoxy-6-O-sulfo-alpha-D-glucopyranose, 2-acetamido-2-deoxy-6-O-sulfo-beta-D-glucopyranose, Beta-N-acetylhexosaminidase, ... | 著者 | Yamada, C, Kashima, T, Fushinobu, S, Katoh, T, Katayama, T. | 登録日 | 2021-12-22 | 公開日 | 2022-12-28 | 最終更新日 | 2023-06-14 | 実験手法 | X-RAY DIFFRACTION (1.65 Å) | 主引用文献 | A bacterial sulfoglycosidase highlights mucin O-glycan breakdown in the gut ecosystem. Nat.Chem.Biol., 19, 2023
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7WDU
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![BU of 7wdu by Molmil](/molmil-images/mine/7wdu) | 6-sulfo-beta-D-N-acetylglucosaminidase from Bifidobacterium bifidum in complex with PUGNAc-6S | 分子名称: | Beta-N-acetylhexosaminidase, CALCIUM ION, [[(3R,4R,5S,6R)-3-acetamido-4,5-bis(oxidanyl)-6-(sulfooxymethyl)oxan-2-ylidene]amino] N-phenylcarbamate | 著者 | Kashima, T, Yamada, C, Fushinobu, S, Katoh, T, Katayama, T. | 登録日 | 2021-12-22 | 公開日 | 2022-12-28 | 最終更新日 | 2023-06-14 | 実験手法 | X-RAY DIFFRACTION (2.23 Å) | 主引用文献 | A bacterial sulfoglycosidase highlights mucin O-glycan breakdown in the gut ecosystem. Nat.Chem.Biol., 19, 2023
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2Z8F
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![BU of 2z8f by Molmil](/molmil-images/mine/2z8f) | The galacto-N-biose-/lacto-N-biose I-binding protein (GL-BP) of the ABC transporter from Bifidobacterium longum in complex with lacto-N-tetraose | 分子名称: | 2-(N-MORPHOLINO)-ETHANESULFONIC ACID, Galacto-N-biose/lacto-N-biose I transporter substrate-binding protein, SODIUM ION, ... | 著者 | Suzuki, R, Wada, J, Katayama, T, Fushinobu, S. | 登録日 | 2007-09-05 | 公開日 | 2008-03-18 | 最終更新日 | 2024-03-13 | 実験手法 | X-RAY DIFFRACTION (1.65 Å) | 主引用文献 | Structural and thermodynamic analyses of solute-binding Protein from Bifidobacterium longum specific for core 1 disaccharide and lacto-N-biose I. J.Biol.Chem., 283, 2008
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2Z8E
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![BU of 2z8e by Molmil](/molmil-images/mine/2z8e) | The galacto-N-biose-/lacto-N-biose I-binding protein (GL-BP) of the ABC transporter from Bifidobacterium longum in complex with galacto-N-biose | 分子名称: | 2-(N-MORPHOLINO)-ETHANESULFONIC ACID, Galacto-N-biose/lacto-N-biose I transporter substrate-binding protein, ZINC ION, ... | 著者 | Suzuki, R, Wada, J, Katayama, T, Fushinobu, S. | 登録日 | 2007-09-05 | 公開日 | 2008-03-18 | 最終更新日 | 2024-03-13 | 実験手法 | X-RAY DIFFRACTION (1.99 Å) | 主引用文献 | Structural and thermodynamic analyses of solute-binding Protein from Bifidobacterium longum specific for core 1 disaccharide and lacto-N-biose I. J.Biol.Chem., 283, 2008
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2Z8D
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![BU of 2z8d by Molmil](/molmil-images/mine/2z8d) | The galacto-N-biose-/lacto-N-biose I-binding protein (GL-BP) of the ABC transporter from Bifidobacterium longum in complex with lacto-N-biose | 分子名称: | 2-(N-MORPHOLINO)-ETHANESULFONIC ACID, Galacto-N-biose/lacto-N-biose I transporter substrate-binding protein, ZINC ION, ... | 著者 | Suzuki, R, Wada, J, Katayama, T, Fushinobu, S. | 登録日 | 2007-09-05 | 公開日 | 2008-03-18 | 最終更新日 | 2024-03-13 | 実験手法 | X-RAY DIFFRACTION (1.85 Å) | 主引用文献 | Structural and thermodynamic analyses of solute-binding Protein from Bifidobacterium longum specific for core 1 disaccharide and lacto-N-biose I. J.Biol.Chem., 283, 2008
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5C2I
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![BU of 5c2i by Molmil](/molmil-images/mine/5c2i) | Crystal structure of Anabaena sp. DyP-type peroxidese (AnaPX) | 分子名称: | 1,2-ETHANEDIOL, ACETIC ACID, Alr1585 protein, ... | 著者 | Yoshida, T, Amano, Y, Tsuge, H, Sugano, Y. | 登録日 | 2015-06-16 | 公開日 | 2015-12-16 | 最終更新日 | 2023-11-08 | 実験手法 | X-RAY DIFFRACTION (1.89 Å) | 主引用文献 | Anabaena sp. DyP-type peroxidase is a tetramer consisting of two asymmetric dimers. Proteins, 84, 2016
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5GQC
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![BU of 5gqc by Molmil](/molmil-images/mine/5gqc) | Crystal structure of lacto-N-biosidase LnbX from Bifidobacterium longum subsp. longum, ligand-free form | 分子名称: | CALCIUM ION, Lacto-N-biosidase, SODIUM ION | 著者 | Yamada, C, Arakawa, T, Katayama, T, Fushinobu, S. | 登録日 | 2016-08-07 | 公開日 | 2017-04-19 | 最終更新日 | 2024-03-20 | 実験手法 | X-RAY DIFFRACTION (2.36 Å) | 主引用文献 | Molecular Insight into Evolution of Symbiosis between Breast-Fed Infants and a Member of the Human Gut Microbiome Bifidobacterium longum Cell Chem Biol, 24, 2017
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5GQG
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![BU of 5gqg by Molmil](/molmil-images/mine/5gqg) | Crystal structure of lacto-N-biosidase LnbX from Bifidobacterium longum subsp. longum, galacto-N-biose complex | 分子名称: | CALCIUM ION, Lacto-N-biosidase, beta-D-galactopyranose-(1-3)-2-acetamido-2-deoxy-beta-D-galactopyranose | 著者 | Yamada, C, Arakawa, T, Katayama, T, Fushinobu, S. | 登録日 | 2016-08-07 | 公開日 | 2017-04-19 | 最終更新日 | 2024-03-20 | 実験手法 | X-RAY DIFFRACTION (2.7 Å) | 主引用文献 | Molecular Insight into Evolution of Symbiosis between Breast-Fed Infants and a Member of the Human Gut Microbiome Bifidobacterium longum Cell Chem Biol, 24, 2017
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5GQF
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![BU of 5gqf by Molmil](/molmil-images/mine/5gqf) | Crystal structure of lacto-N-biosidase LnbX from Bifidobacterium longum subsp. longum, lacto-N-biose complex | 分子名称: | CALCIUM ION, Lacto-N-biosidase, beta-D-galactopyranose-(1-3)-2-acetamido-2-deoxy-beta-D-glucopyranose | 著者 | Yamada, C, Arakawa, T, Katayama, T, Fushinobu, S. | 登録日 | 2016-08-07 | 公開日 | 2017-04-19 | 最終更新日 | 2024-03-20 | 実験手法 | X-RAY DIFFRACTION (1.82 Å) | 主引用文献 | Molecular Insight into Evolution of Symbiosis between Breast-Fed Infants and a Member of the Human Gut Microbiome Bifidobacterium longum Cell Chem Biol, 24, 2017
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8IBR
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![BU of 8ibr by Molmil](/molmil-images/mine/8ibr) | Crystal structure of GH42 beta-galactosidase BiBga42A from Bifidobacterium longum subspecies infantis in complex with glycerol | 分子名称: | Beta-galactosidase, DI(HYDROXYETHYL)ETHER, GLYCEROL | 著者 | Hidaka, M, Fushinobu, S, Gotoh, A, Katayama, T. | 登録日 | 2023-02-10 | 公開日 | 2023-06-07 | 最終更新日 | 2023-12-20 | 実験手法 | X-RAY DIFFRACTION (1.7 Å) | 主引用文献 | Substrate recognition mode of a glycoside hydrolase family 42 beta-galactosidase from Bifidobacterium longum subspecies infantis ( Bi Bga42A) revealed by crystallographic and mutational analyses. Microbiome Res Rep, 2, 2023
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8IBT
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![BU of 8ibt by Molmil](/molmil-images/mine/8ibt) | Crystal structure of GH42 beta-galactosidase BiBga42A from Bifidobacterium longum subspecies infantis E318S mutant in complex with lacto-N-tetraose | 分子名称: | Beta-galactosidase, beta-D-galactopyranose-(1-3)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-3)-beta-D-galactopyranose-(1-4)-beta-D-glucopyranose | 著者 | Hidaka, M, Fushinobu, S, Gotoh, A, Katayama, T. | 登録日 | 2023-02-10 | 公開日 | 2023-06-07 | 最終更新日 | 2023-12-20 | 実験手法 | X-RAY DIFFRACTION (2.2 Å) | 主引用文献 | Substrate recognition mode of a glycoside hydrolase family 42 beta-galactosidase from Bifidobacterium longum subspecies infantis ( Bi Bga42A) revealed by crystallographic and mutational analyses. Microbiome Res Rep, 2, 2023
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8IBS
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![BU of 8ibs by Molmil](/molmil-images/mine/8ibs) | Crystal structure of GH42 beta-galactosidase BiBga42A from Bifidobacterium longum subspecies infantis E160A/E318A mutant in complex with galactose | 分子名称: | Beta-galactosidase, alpha-D-galactopyranose | 著者 | Hidaka, M, Fushinobu, S, Gotoh, A, Katayama, T. | 登録日 | 2023-02-10 | 公開日 | 2023-06-07 | 最終更新日 | 2023-12-20 | 実験手法 | X-RAY DIFFRACTION (1.9 Å) | 主引用文献 | Substrate recognition mode of a glycoside hydrolase family 42 beta-galactosidase from Bifidobacterium longum subspecies infantis ( Bi Bga42A) revealed by crystallographic and mutational analyses. Microbiome Res Rep, 2, 2023
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2YVK
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![BU of 2yvk by Molmil](/molmil-images/mine/2yvk) | Crystal structure of 5-methylthioribose 1-phosphate isomerase product complex from Bacillus subtilis | 分子名称: | 5-S-METHYL-1-O-PHOSPHONO-5-THIO-D-RIBULOSE, Methylthioribose-1-phosphate isomerase | 著者 | Tamura, H, Inoue, T, Kai, Y, Matsumura, H. | 登録日 | 2007-04-13 | 公開日 | 2008-01-22 | 最終更新日 | 2023-10-25 | 実験手法 | X-RAY DIFFRACTION (2.4 Å) | 主引用文献 | Crystal structure of 5-methylthioribose 1-phosphate isomerase product complex from Bacillus subtilis: Implications for catalytic mechanism Protein Sci., 17, 2008
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2YRF
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![BU of 2yrf by Molmil](/molmil-images/mine/2yrf) | Crystal structure of 5-methylthioribose 1-phosphate isomerase from Bacillus subtilis complexed with sulfate ion | 分子名称: | Methylthioribose-1-phosphate isomerase, SULFATE ION | 著者 | Tamura, H, Inoue, T, Kai, Y, Matsumura, H. | 登録日 | 2007-04-02 | 公開日 | 2008-01-22 | 最終更新日 | 2023-10-25 | 実験手法 | X-RAY DIFFRACTION (2.7 Å) | 主引用文献 | Crystal structure of 5-methylthioribose 1-phosphate isomerase product complex from Bacillus subtilis: Implications for catalytic mechanism Protein Sci., 17, 2008
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2ZVI
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![BU of 2zvi by Molmil](/molmil-images/mine/2zvi) | Crystal structure of 2,3-diketo-5-methylthiopentyl-1-phosphate enolase from Bacillus subtilis | 分子名称: | 2,3-diketo-5-methylthiopentyl-1-phosphate enolase | 著者 | Tamura, H, Yadani, T, Kai, Y, Inoue, T, Matsumura, H. | 登録日 | 2008-11-07 | 公開日 | 2009-09-01 | 最終更新日 | 2023-11-01 | 実験手法 | X-RAY DIFFRACTION (2.3 Å) | 主引用文献 | Structure of the apo decarbamylated form of 2,3-diketo-5-methylthiopentyl-1-phosphate enolase from Bacillus subtilis Acta Crystallogr.,Sect.D, 65, 2009
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5BXS
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![BU of 5bxs by Molmil](/molmil-images/mine/5bxs) | LNBase in complex with LNB-NHAcCAS | 分子名称: | 6-ACETAMIDO-6-DEOXY-CASTANOSPERMINE, Lacto-N-biosidase, SULFATE ION, ... | 著者 | Ito, T, Arakawa, T, Fushinobu, S. | 登録日 | 2015-06-09 | 公開日 | 2015-09-09 | 最終更新日 | 2023-11-08 | 実験手法 | X-RAY DIFFRACTION (2.2 Å) | 主引用文献 | Gaining insight into the catalysis by GH20 lacto-N-biosidase using small molecule inhibitors and structural analysis Chem.Commun.(Camb.), 51, 2015
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5BXR
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![BU of 5bxr by Molmil](/molmil-images/mine/5bxr) | LNBase in complex with LNB-NHAcDNJ | 分子名称: | 2-ACETAMIDO-1,2-DIDEOXYNOJIRMYCIN, Lacto-N-biosidase, SULFATE ION, ... | 著者 | Ito, T, Arakawa, T, Fushinobu, S. | 登録日 | 2015-06-09 | 公開日 | 2015-09-09 | 最終更新日 | 2023-11-08 | 実験手法 | X-RAY DIFFRACTION (1.6 Å) | 主引用文献 | Gaining insight into the catalysis by GH20 lacto-N-biosidase using small molecule inhibitors and structural analysis Chem.Commun.(Camb.), 51, 2015
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3B21
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![BU of 3b21 by Molmil](/molmil-images/mine/3b21) | |
5BXT
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![BU of 5bxt by Molmil](/molmil-images/mine/5bxt) | LNBase in complex with LNB-NHAcAUS | 分子名称: | Lacto-N-biosidase, N-{[(1R,2R,3R,7S,7aR)-1,2,7-trihydroxyhexahydro-1H-pyrrolizin-3-yl]methyl}acetamide, SULFATE ION, ... | 著者 | Ito, T, Arakawa, T, Fushinobu, S. | 登録日 | 2015-06-09 | 公開日 | 2015-09-09 | 最終更新日 | 2023-11-08 | 実験手法 | X-RAY DIFFRACTION (1.8 Å) | 主引用文献 | Gaining insight into the catalysis by GH20 lacto-N-biosidase using small molecule inhibitors and structural analysis Chem.Commun.(Camb.), 51, 2015
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5BXP
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![BU of 5bxp by Molmil](/molmil-images/mine/5bxp) | LNBase in complex with LNB-LOGNAc | 分子名称: | Lacto-N-biosidase, SULFATE ION, beta-D-galactopyranose-(1-3)-N-acetylglucosaminono-1,5-lactone (Z)-oxime | 著者 | Ito, T, Arakawa, T, Fushinobu, S. | 登録日 | 2015-06-09 | 公開日 | 2015-09-09 | 最終更新日 | 2023-11-08 | 実験手法 | X-RAY DIFFRACTION (1.7 Å) | 主引用文献 | Gaining insight into the catalysis by GH20 lacto-N-biosidase using small molecule inhibitors and structural analysis Chem.Commun.(Camb.), 51, 2015
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7BPG
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![BU of 7bpg by Molmil](/molmil-images/mine/7bpg) | Structure of serinol nucleic acid - RNA complex | 分子名称: | CALCIUM ION, RNA (5'-R(*GP*CP*UP*GP*CP*(5BU)P*GP*C)-3'), SNA (S-(F7R)(F7X)(F7O)(F7R)(F7X)(F7O)(F7R)(F7U)-R) | 著者 | Kamiya, Y, Satoh, T, Kodama, A, Suzuki, T, Uchiyama, S, Kato, K, Asanuma, H. | 登録日 | 2020-03-22 | 公開日 | 2020-11-25 | 最終更新日 | 2024-03-27 | 実験手法 | X-RAY DIFFRACTION (1.7 Å) | 主引用文献 | Intrastrand backbone-nucleobase interactions stabilize unwound right-handed helical structures of heteroduplexes of L-aTNA/RNA and SNA/RNA Commun Chem, 2020
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7BPF
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![BU of 7bpf by Molmil](/molmil-images/mine/7bpf) | Structure of L-threoninol nucleic acid - RNA complex | 分子名称: | L-aTNA (3'-(*GP*CP*AP*GP*CP*AP*GP*C)-1'), RNA (5'-R(*GP*CP*UP*GP*CP*(5BU)P*GP*C)-3') | 著者 | Kamiya, Y, Satoh, T, Kodama, A, Suzuki, T, Uchiyama, S, Kato, K, Asanuma, H. | 登録日 | 2020-03-22 | 公開日 | 2020-11-25 | 最終更新日 | 2024-03-27 | 実験手法 | X-RAY DIFFRACTION (1.75 Å) | 主引用文献 | Intrastrand backbone-nucleobase interactions stabilize unwound right-handed helical structures of heteroduplexes of L-aTNA/RNA and SNA/RNA Commun Chem, 2020
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7YAG
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![BU of 7yag by Molmil](/molmil-images/mine/7yag) | CryoEM structure of SPCA1a in E1-Ca-AMPPCP state subclass 1 | 分子名称: | CALCIUM ION, Calcium-transporting ATPase type 2C member 1, PHOSPHOMETHYLPHOSPHONIC ACID ADENYLATE ESTER, ... | 著者 | Chen, Z, Watanabe, S, Inaba, K. | 登録日 | 2022-06-28 | 公開日 | 2023-03-22 | 実験手法 | ELECTRON MICROSCOPY (3.1 Å) | 主引用文献 | Cryo-EM structures of human SPCA1a reveal the mechanism of Ca 2+ /Mn 2+ transport into the Golgi apparatus. Sci Adv, 9, 2023
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7YAH
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![BU of 7yah by Molmil](/molmil-images/mine/7yah) | CryoEM structure of SPCA1a in E1-Ca-AMPPCP state subclass 2 | 分子名称: | CALCIUM ION, Calcium-transporting ATPase type 2C member 1, PHOSPHOMETHYLPHOSPHONIC ACID ADENYLATE ESTER, ... | 著者 | Chen, Z, Watanabe, S, Inaba, K. | 登録日 | 2022-06-28 | 公開日 | 2023-03-22 | 実験手法 | ELECTRON MICROSCOPY (3.12 Å) | 主引用文献 | Cryo-EM structures of human SPCA1a reveal the mechanism of Ca 2+ /Mn 2+ transport into the Golgi apparatus. Sci Adv, 9, 2023
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