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2D29
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BU of 2d29 by Molmil
Structural study on project ID TT0172 from Thermus thermophilus HB8
分子名称: FLAVIN-ADENINE DINUCLEOTIDE, acyl-CoA dehydrogenase
著者Shimizu, K, Kunishima, N, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
登録日2005-09-05
公開日2006-03-05
最終更新日2023-10-25
実験手法X-RAY DIFFRACTION (1.65 Å)
主引用文献Structural study on project ID TT0172 from Thermus thermophilus HB8
To be Published
2D3K
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BU of 2d3k by Molmil
Structural study on Project ID PH1539 from Pyrococcus horikoshii OT3
分子名称: Peptidyl-tRNA hydrolase, ZINC ION
著者Shimizu, K, Kunishima, N, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
登録日2005-09-29
公開日2006-03-29
最終更新日2023-10-25
実験手法X-RAY DIFFRACTION (1.9 Å)
主引用文献Structure of peptidyl-tRNA hydrolase 2 from Pyrococcus horikoshii OT3: insight into the functional role of its dimeric state.
Acta Crystallogr.,Sect.D, 64, 2008
2DSJ
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BU of 2dsj by Molmil
Crystal structure of project ID TT0128 from Thermus thermophilus HB8
分子名称: CHLORIDE ION, Pyrimidine-nucleoside (Thymidine) phosphorylase
著者Shimizu, K, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
登録日2006-06-30
公開日2006-12-30
最終更新日2023-10-25
実験手法X-RAY DIFFRACTION (1.8 Å)
主引用文献Crystal structure of project ID TT0128 from Thermus thermophilus HB8
To be Published
2DVL
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BU of 2dvl by Molmil
Crystal structure of project TT0160 from Thermus thermophilus HB8
分子名称: Acyl-CoA dehydrogenase, FLAVIN-ADENINE DINUCLEOTIDE
著者Shimizu, K, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
登録日2006-07-31
公開日2007-01-31
最終更新日2023-10-25
実験手法X-RAY DIFFRACTION (2.5 Å)
主引用文献Crystal structure of TT0160 from Thermus thermophilus HB8
To be Published
2DY0
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BU of 2dy0 by Molmil
Crystal structure of project JW0458 from Escherichia coli
分子名称: Adenine phosphoribosyltransferase, MAGNESIUM ION
著者Shimizu, K, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
登録日2006-09-04
公開日2007-03-04
最終更新日2023-10-25
実験手法X-RAY DIFFRACTION (1.25 Å)
主引用文献Crystal structure of JW0458 from Escherichia coli
To be Published
2ELC
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BU of 2elc by Molmil
Crystal structure of TTHA1842 from Thermus thermophilus HB8
分子名称: Anthranilate phosphoribosyltransferase, GLYCEROL, SODIUM ION
著者Shimizu, K, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
登録日2007-03-27
公開日2007-10-02
最終更新日2023-10-25
実験手法X-RAY DIFFRACTION (1.55 Å)
主引用文献Crystal structure of TTHA1842 from Thermus thermophilus HB8
To be Published
2EEQ
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BU of 2eeq by Molmil
Mutant Y29M structure of PH0725 from Pyrococcus horikoshii OT3
分子名称: GLYCEROL, S-ADENOSYL-L-HOMOCYSTEINE, SULFATE ION, ...
著者Shimizu, K, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
登録日2007-02-16
公開日2007-08-21
最終更新日2023-10-25
実験手法X-RAY DIFFRACTION (2.5 Å)
主引用文献Mutant Y29M structure of PH0725 from Pyrococcus horikoshii OT3
To be Published
2EMU
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BU of 2emu by Molmil
Mutant L21H structure of PH0725 from Pyrococcus horikoshii OT3
分子名称: S-ADENOSYL-L-HOMOCYSTEINE, SODIUM ION, diphthine synthase
著者Shimizu, K, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
登録日2007-03-28
公開日2007-10-02
最終更新日2023-10-25
実験手法X-RAY DIFFRACTION (2.2 Å)
主引用文献Mutant L21H structure of PH0725 from Pyrococcus horikoshii OT3
To be Published
2ENU
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BU of 2enu by Molmil
Mutant L121M structure of TTHB049 from Thermus thermophilus HB8
分子名称: Alpha-ribazole-5'-phosphate phosphatase, GLYCEROL
著者Shimizu, K, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
登録日2007-03-28
公開日2007-10-02
最終更新日2023-10-25
実験手法X-RAY DIFFRACTION (1.7 Å)
主引用文献Mutant L121M structure of TTHB049 from Thermus thermophilus HB8
To be Published
2ZV3
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BU of 2zv3 by Molmil
Crystal structure of project MJ0051 from Methanocaldococcus jannaschii DSM 2661
分子名称: Peptidyl-tRNA hydrolase
著者Shimizu, K, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
登録日2008-10-31
公開日2009-05-05
最終更新日2023-11-01
実験手法X-RAY DIFFRACTION (2.1 Å)
主引用文献Crystal structure of project MJ0051 from Methanocaldococcus jannaschii DSM 2661
To be published
2ZVC
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BU of 2zvc by Molmil
Form 2 structure (C2221) of TT0207 from Thermus thermophilus HB8
分子名称: Precorrin-3 C17-methyltransferase, S-ADENOSYL-L-HOMOCYSTEINE
著者Shimizu, K, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
登録日2008-11-04
公開日2009-05-05
最終更新日2023-11-01
実験手法X-RAY DIFFRACTION (2 Å)
主引用文献Form 2 structure (C2221) of TT0207 from Thermus thermophilus HB8
To be published
2ZVB
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BU of 2zvb by Molmil
Crystal structure of TT0207 from Thermus thermophilus HB8
分子名称: Precorrin-3 C17-methyltransferase, S-ADENOSYL-L-HOMOCYSTEINE
著者Shimizu, K, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
登録日2008-11-04
公開日2009-05-05
最終更新日2024-03-13
実験手法X-RAY DIFFRACTION (2 Å)
主引用文献Crystal structure of TT0207 from Thermus thermophilus HB8
To be published
2RQZ
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BU of 2rqz by Molmil
Structure of sugar modified epidermal growth factor-like repeat 12 of mouse Notch-1 receptor
分子名称: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-3)-alpha-L-fucopyranose, Neurogenic locus notch homolog protein 1
著者Shimizu, K, Fujitani, N, Hosoguchi, K, Nishimura, S.
登録日2010-02-26
公開日2010-10-13
最終更新日2020-07-29
実験手法SOLUTION NMR
主引用文献Chemical Synthesis, Folding, and Structural Insights into O-Fucosylated Epidermal Growth Factor-like Repeat 12 of Mouse Notch-1 Receptor
J.Am.Chem.Soc., 132, 2010
1WNG
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BU of 1wng by Molmil
Structural study of project ID PH0725 from Pyrococcus horikoshii OT3
分子名称: Probable diphthine synthase, S-ADENOSYL-L-HOMOCYSTEINE, SULFATE ION
著者Kunishima, N, Shimizu, K, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
登録日2004-08-02
公開日2005-07-19
最終更新日2024-03-13
実験手法X-RAY DIFFRACTION (2.1 Å)
主引用文献Structures of two archaeal diphthine synthases: insights into the post-translational modification of elongation factor 2.
Acta Crystallogr.,Sect.D, 64, 2008
2RR2
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BU of 2rr2 by Molmil
Structure of O-fucosylated epidermal growth factor-like repeat 12 of mouse Notch-1 receptor
分子名称: Neurogenic locus notch homolog protein 1, alpha-L-fucopyranose
著者Hosoguchi, K, Shimizu, K, Fujitani, N, Nishimura, S.
登録日2010-02-26
公開日2010-10-13
最終更新日2020-07-29
実験手法SOLUTION NMR
主引用文献Chemical Synthesis, Folding, and Structural Insights into O-Fucosylated Epidermal Growth Factor-like Repeat 12 of Mouse Notch-1 Receptor
J.Am.Chem.Soc., 132, 2010
2RR0
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BU of 2rr0 by Molmil
Structure of epidermal growth factor-like repeat 12 of mouse Notch-1 receptor
分子名称: Neurogenic locus notch homolog protein 1
著者Hosoguchi, K, Shimizu, K, Fujitani, N, Nishimura, S.
登録日2010-02-26
公開日2010-10-13
最終更新日2011-07-13
実験手法SOLUTION NMR
主引用文献Chemical Synthesis, Folding, and Structural Insights into O-Fucosylated Epidermal Growth Factor-like Repeat 12 of Mouse Notch-1 Receptor
J.Am.Chem.Soc., 132, 2010
1WQL
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BU of 1wql by Molmil
Cumene dioxygenase (cumA1A2) from Pseudomonas fluorescens IP01
分子名称: FE (II) ION, FE2/S2 (INORGANIC) CLUSTER, OXYGEN MOLECULE, ...
著者Dong, X, Fushinobu, S, Fukuda, E, Terada, T, Nakamura, S, Shimizu, K, Nojiri, H, Omori, T, Shoun, H, Wakagi, T.
登録日2004-09-30
公開日2005-03-29
最終更新日2023-10-25
実験手法X-RAY DIFFRACTION (2.2 Å)
主引用文献Crystal Structure of the Terminal Oxygenase Component of Cumene Dioxygenase from Pseudomonas fluorescens IP01
J.BACTERIOL., 187, 2005
5B2C
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BU of 5b2c by Molmil
Crystal structure of Mumps virus hemagglutinin-neuraminidase
分子名称: 2-acetamido-2-deoxy-beta-D-glucopyranose, HN protein, SULFATE ION
著者Kubota, M, Takeuchi, K, Watanabe, S, Ohno, S, Matsuoka, R, Kohda, D, Hiramatsu, H, Suzuki, Y, Nakayama, T, Terada, T, Shimizu, K, Shimizu, N, Yanagi, Y, Hashiguchi, T.
登録日2016-01-14
公開日2016-09-28
最終更新日2023-11-08
実験手法X-RAY DIFFRACTION (2.238 Å)
主引用文献Trisaccharide containing alpha 2,3-linked sialic acid is a receptor for mumps virus
Proc.Natl.Acad.Sci.USA, 113, 2016
5B2D
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BU of 5b2d by Molmil
Crystal structure of Mumps virus hemagglutinin-neuraminidase bound to 3-sialyllactose
分子名称: 2-acetamido-2-deoxy-beta-D-glucopyranose, HN protein, N-acetyl-alpha-neuraminic acid-(2-3)-beta-D-galactopyranose-(1-4)-alpha-D-glucopyranose, ...
著者Kubota, M, Takeuchi, K, Watanabe, S, Ohno, S, Matsuoka, R, Kohda, D, Hiramatsu, H, Suzuki, Y, Nakayama, T, Terada, T, Shimizu, K, Shimizu, N, Yanagi, Y, Hashiguchi, T.
登録日2016-01-14
公開日2016-09-28
最終更新日2023-11-08
実験手法X-RAY DIFFRACTION (2.177 Å)
主引用文献Trisaccharide containing alpha 2,3-linked sialic acid is a receptor for mumps virus
Proc.Natl.Acad.Sci.USA, 113, 2016
6IGX
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BU of 6igx by Molmil
Crystal structure of human CAP-G in complex with CAP-H
分子名称: 4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID, Condensin complex subunit 2, Condensin complex subunit 3
著者Hara, K, Migita, T, Shimizu, K, Hashimoto, H.
登録日2018-09-26
公開日2019-03-13
最終更新日2024-03-27
実験手法X-RAY DIFFRACTION (2.995 Å)
主引用文献Structural basis of HEAT-kleisin interactions in the human condensin I subcomplex.
Embo Rep., 20, 2019
7FBO
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BU of 7fbo by Molmil
geranyl pyrophosphate C6-methyltransferase BezA binding with S-adenosylhomocysteine
分子名称: 4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID, BezA, S-ADENOSYL-L-HOMOCYSTEINE
著者Tsutsumi, H, Moriwaki, Y, Terada, T, Shimizu, K, Katsuyama, Y, Ohnishi, Y.
登録日2021-07-12
公開日2021-12-01
最終更新日2023-11-29
実験手法X-RAY DIFFRACTION (2.56 Å)
主引用文献Structural and Molecular Basis of the Catalytic Mechanism of Geranyl Pyrophosphate C6-Methyltransferase: Creation of an Unprecedented Farnesyl Pyrophosphate C6-Methyltransferase.
Angew.Chem.Int.Ed.Engl., 61, 2022
1YT6
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BU of 1yt6 by Molmil
NMR structure of peptide SD
分子名称: peptide SD
著者Murata, T, Hemmi, H, Nakamura, S, Shimizu, K, Suzuki, Y, Yamaguchi, I.
登録日2005-02-10
公開日2005-09-27
最終更新日2022-03-02
実験手法SOLUTION NMR
主引用文献Structure, epitope mapping, and docking simulation of a gibberellin mimic peptide as a peptidyl mimotope for a hydrophobic ligand.
Febs J., 272, 2005
7FBH
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BU of 7fbh by Molmil
geranyl pyrophosphate C6-methyltransferase BezA
分子名称: 1,2-ETHANEDIOL, 4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID, BezA, ...
著者Tsutsumi, H, Moriwaki, Y, Terada, T, Shimizu, K, Katsuyama, Y, Ohnishi, Y.
登録日2021-07-10
公開日2021-12-01
最終更新日2024-05-29
実験手法X-RAY DIFFRACTION (2.1 Å)
主引用文献Structural and Molecular Basis of the Catalytic Mechanism of Geranyl Pyrophosphate C6-Methyltransferase: Creation of an Unprecedented Farnesyl Pyrophosphate C6-Methyltransferase.
Angew.Chem.Int.Ed.Engl., 61, 2022
1VCE
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BU of 1vce by Molmil
Crystal structure of project ID PH0725 from Pyrococcus horikoshii OT3
分子名称: S-ADENOSYL-L-HOMOCYSTEINE, diphthine synthase
著者Kunishima, N, Shimizu, K, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
登録日2004-03-07
公開日2005-03-29
最終更新日2023-12-27
実験手法X-RAY DIFFRACTION (2.1 Å)
主引用文献Crystal structure of diphthine synthase from Pyrococcus horikoshii OT3
To be Published
5ZQU
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BU of 5zqu by Molmil
Crystal structure of tetrameric RXRalpha-LBD complexed with partial agonist CBt-PMN
分子名称: 1-(3,5,5,8,8-pentamethyl-6,7-dihydronaphthalen-2-yl)benzotriazole-5-carboxylic acid, BROMIDE ION, Retinoic acid receptor RXR-alpha
著者Miyashita, Y, Numoto, N, Arulmozhiraja, S, Nakano, S, Matsuo, N, Shimizu, K, Kakuta, H, Ito, S, Ikura, T, Ito, N, Tokiwa, H.
登録日2018-04-20
公開日2019-02-27
最終更新日2023-11-22
実験手法X-RAY DIFFRACTION (2.60038781 Å)
主引用文献Dual conformation of the ligand induces the partial agonistic activity of retinoid X receptor alpha (RXR alpha ).
FEBS Lett., 593, 2019

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件を2024-06-12に公開中

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