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Solution structures of ferrocytochrome c3 from Desulfovibrio vulgaris Miyazaki F
分子名称:	HEME C, cytochrome c3
著者	Harada, E, Fukuoka, Y, Ohmura, T, Fukunishi, A, Kawai, G, Fujiwara, T, Akutsu, H.
登録日	2001-12-29
公開日	2002-07-10
最終更新日	2023-12-27
実験手法	SOLUTION NMR
主引用文献	Redox-coupled conformational alternations in cytochrome c(3) from D. vulgaris Miyazaki F on the basis of its reduced solution structure. J.Mol.Biol., 319, 2002

8JBD

Crystal structure of Adenylosuccinate lyase from Thermus thermophilus HB8, TtPurB
分子名称:	Adenylosuccinate lyase
著者	Nemoto, N, Kawai, G, Sampei, G.
登録日	2023-05-08
公開日	2023-11-15
実験手法	X-RAY DIFFRACTION (2.38 Å)
主引用文献	Crystal structure of adenylosuccinate lyase from the thermophilic bacterium Thermus thermophilus HB8. Acta Crystallogr.,Sect.F, 79, 2023

2YW2

Crystal structure of GAR synthetase from Aquifex aeolicus in complex with ATP
分子名称:	ADENOSINE-5'-TRIPHOSPHATE, PHOSPHATE ION, Phosphoribosylamine--glycine ligase
著者	Baba, S, Kanagawa, M, Kuramitsu, S, Yokoyama, S, Kawai, G, Sampei, G, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
登録日	2007-04-19
公開日	2007-10-23
最終更新日	2023-10-25
実験手法	X-RAY DIFFRACTION (1.8 Å)
主引用文献	Crystal structures of glycinamide ribonucleotide synthetase, PurD, from thermophilic eubacteria J.Biochem., 148, 2010

5AVM

Crystal structures of 5-aminoimidazole ribonucleotide (AIR) synthetase, PurM, from Thermus thermophilus
分子名称:	Phosphoribosylformylglycinamidine cyclo-ligase, SULFATE ION
著者	Kanagawa, M, Baba, S, Watanabe, Y, Nakagawa, N, Ebihara, A, Sampei, G, Kawai, G, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
登録日	2015-06-23
公開日	2015-11-25
最終更新日	2023-11-08
実験手法	X-RAY DIFFRACTION (2.2 Å)
主引用文献	Crystal structures and ligand binding of PurM proteins from Thermus thermophilus and Geobacillus kaustophilus J.Biochem., 159, 2016

3AV3

Crystal structure of glycinamide ribonucleotide transformylase 1 from Geobacillus kaustophilus
分子名称:	MAGNESIUM ION, Phosphoribosylglycinamide formyltransferase
著者	Kanagawa, M, Baba, S, Nakagawa, N, Ebihara, A, Kuramitsu, S, Yokoyama, S, Sampei, G, Kawai, G, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
登録日	2011-02-18
公開日	2012-03-07
最終更新日	2014-01-15
実験手法	X-RAY DIFFRACTION (1.7 Å)
主引用文献	Structures and reaction mechanisms of the two related enzymes, PurN and PurU. J.Biochem., 154, 2013

1AA9

HUMAN C-HA-RAS(1-171)(DOT)GDP, NMR, MINIMIZED AVERAGE STRUCTURE
分子名称:	C-HA-RAS, GUANOSINE-5'-DIPHOSPHATE, MAGNESIUM ION
著者	Ito, Y, Yamasaki, Y, Muto, Y, Kawai, G, Nishimura, S, Miyazawa, T, Yokoyama, S, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
登録日	1997-01-27
公開日	1997-07-29
最終更新日	2024-05-22
実験手法	SOLUTION NMR
主引用文献	Regional polysterism in the GTP-bound form of the human c-Ha-Ras protein. Biochemistry, 36, 1997

3AUF

Crystal structure of glycinamide ribonucleotide transformylase 1 from Symbiobacterium toebii
分子名称:	Glycinamide ribonucleotide transformylase 1
著者	Kanagawa, M, Baba, S, Nagira, T, Kuramitsu, S, Yokoyama, S, Sampei, G, Kawai, G, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
登録日	2011-02-03
公開日	2012-03-07
最終更新日	2023-11-01
実験手法	X-RAY DIFFRACTION (2.07 Å)
主引用文献	Structures and reaction mechanisms of the two related enzymes, PurN and PurU. J.Biochem., 154, 2013

7FJ0

Interaction between a fluoroquinolone derivative and RNAs with a single bulge
分子名称:	1-cyclopropyl-N-[3-(dimethylamino)propyl]-7-(4-ethylpiperazin-1-yl)-6-fluoranyl-4-oxidanylidene-quinoline-3-carboxamide, RNA (5'-R(GPGPAPUPGPCPUPUPAPCPUPCPAPGPCPGPAPUPCPC)-3')
著者	Nagano, K, Kamimura, T, Kawai, G.
登録日	2021-08-02
公開日	2021-12-01
最終更新日	2024-05-15
実験手法	SOLUTION NMR
主引用文献	Interaction between a fluoroquinolone derivative and RNAs with a single bulge. J.Biochem., 171, 2022

7FHI

Interaction between a fluoroquinolone derivative and RNAs with a single bulge
分子名称:	1-cyclopropyl-N-[3-(dimethylamino)propyl]-7-(4-ethylpiperazin-1-yl)-6-fluoranyl-4-oxidanylidene-quinoline-3-carboxamide, RNA (5'-R(GPGPAPUPGPCPUPUPAPCPUPCPAPGPCPCPAPUPCPC)-3')
著者	Nagano, K, Kamimura, T, Kawai, G.
登録日	2021-07-29
公開日	2021-12-01
最終更新日	2024-05-15
実験手法	SOLUTION NMR
主引用文献	Interaction between a fluoroquinolone derivative and RNAs with a single bulge. J.Biochem., 171, 2022

7FGT

Discovery of DS15060524; Gene targeting chimera (GeneTAC) for the treatment of Friedreich's Ataxia (FRDA)
分子名称:	DNA (5'-D(APAPGPAPAPGPAPAPG)-3'), DNA (5'-D(CPTPTPCPTPTPCPTPT)-3'), ~{N}-[3-[3-(dimethylamino)propylamino]-3-oxidanylidene-propyl]-1-methyl-4-[3-[[1-methyl-4-[[1-methyl-4-[3-[[1-methyl-4-[(1-methylimidazol-2-yl)carbonylamino]pyrrol-2-yl]carbonylamino]propanoylamino]imidazol-2-yl]carbonylamino]pyrrol-2-yl]carbonylamino]propanoylamino]imidazole-2-carboxamide
著者	Takase, N, Kawai, G, Igarashi, W, Katagiri, T.
登録日	2021-07-28
公開日	2022-08-03
最終更新日	2024-05-15
実験手法	SOLUTION NMR
主引用文献	Discovery of DS15060524; Gene targeting chimera (GeneTAC) for the treatment of Friedreich's Ataxia (FRDA) To be published

7EXY

T-hairpin structure found in the RNA element involved in the piRNA biogenesis
分子名称:	RNA (5'-R(UPUPGPGPUPUPUPGPAPUPUPCPCPAPAPG)-3')
著者	Takase, N, Kawai, G.
登録日	2021-05-29
公開日	2022-03-02
最終更新日	2024-05-15
実験手法	SOLUTION NMR
主引用文献	T-hairpin structure found in the RNA element involved in piRNA biogenesis. Rna, 28, 2022

6LN3

Crystal structure of adenylate kinase from an extremophilic archaeon Aeropyrum pernix with ATP and AMP
分子名称:	4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID, ADENOSINE MONOPHOSPHATE, ADENOSINE-5'-TRIPHOSPHATE, ...
著者	Shibanuma, Y, Nemoto, N, Yamamoto, N, Sampei, G, Kawai, G.
登録日	2019-12-28
公開日	2020-04-22
最終更新日	2023-11-22
実験手法	X-RAY DIFFRACTION (2 Å)
主引用文献	Crystal structure of adenylate kinase from an extremophilic archaeon Aeropyrum pernix with ATP and AMP. J.Biochem., 168, 2020

1XWU

Solution structure of ACAUAGA loop
分子名称:	5'-R(CPGPAPAPAPCPAPUPAPGPAPUPUPCPGPA)-3'
著者	Sakamoto, T, Oguro, A, Kawai, G, Ohtsu, T, Nakamura, Y.
登録日	2004-11-02
公開日	2005-02-15
最終更新日	2024-05-29
実験手法	SOLUTION NMR
主引用文献	NMR structures of double loops of an RNA aptamer against mammalian initiation factor 4A Nucleic Acids Res., 33, 2005

1XWP

Solution structure of AUCGCA loop
分子名称:	5'-R(GPGPAPGPAPUPCPGPCPAPCPUPCPCP*A)-3'
著者	Sakamoto, T, Oguro, A, Kawai, G, Ohtsu, T, Nakamura, Y.
登録日	2004-11-02
公開日	2005-02-15
最終更新日	2024-05-29
実験手法	SOLUTION NMR
主引用文献	NMR structures of double loops of an RNA aptamer against mammalian initiation factor 4A Nucleic Acids Res., 33, 2005

3VIU

Crystal structure of PurL from thermus thermophilus
分子名称:	ADENOSINE-5'-DIPHOSPHATE, DI(HYDROXYETHYL)ETHER, MAGNESIUM ION, ...
著者	Suzuki, S, Yanai, H, Kanagawa, M, Tamura, S, Watanabe, Y, Fuse, K, Baba, S, Sampei, G, Kawai, G, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
登録日	2011-10-12
公開日	2012-01-18
最終更新日	2012-04-25
実験手法	X-RAY DIFFRACTION (2.35 Å)
主引用文献	Structure of N-formylglycinamide ribonucleotide amidotransferase II (PurL) from Thermus thermophilus HB8 Acta Crystallogr.,Sect.F, 68, 2012

2CUW

Crystal Structure of Thermus thermophilus PurS, one of the subunits of Formylglycinamide Ribonucleotide Amidotransferase in the purine biosynthetic pathway
分子名称:	PurS
著者	Yanai, H, Kanagawa, M, Sampei, G, Kawai, G, Yokoyama, S, Kuramitsu, S, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
登録日	2005-05-30
公開日	2005-11-30
最終更新日	2024-10-16
実験手法	X-RAY DIFFRACTION (2.3 Å)
主引用文献	Crystal Structure of Thermus thermophilus PurS, One of the Subunits of Formylglycinamide Ribonucleotide Amidotransferase in the Purine Biosynthetic Pathway To be Published

3AHU

Crystal structure of YmaH (Hfq) from Bacillus subtilis in complex with an RNA aptamer.
分子名称:	5'-R(APGPAPGPAPG)-3', Protein hfq
著者	Baba, S, Someya, T, Kumasaka, T, Kawai, G, Nakamura, K.
登録日	2010-04-29
公開日	2011-07-13
最終更新日	2023-11-01
実験手法	X-RAY DIFFRACTION (2.2 Å)
主引用文献	Crystal structure of YmaH (Hfq) from Bacillus subtilis in complex with an RNA aptamer. To be Published

2YYU

Crystal structure of uncharacterized conserved protein from Geobacillus kaustophilus
分子名称:	CYTIDINE-5'-MONOPHOSPHATE, Orotidine 5'-phosphate decarboxylase
著者	Kanagawa, M, Baba, S, Nakamura, Y, Bessho, Y, Kuramitsu, S, Yokoyama, S, Kawai, G, Sampei, G, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
登録日	2007-05-02
公開日	2007-11-06
最終更新日	2024-03-13
実験手法	X-RAY DIFFRACTION (2.2 Å)
主引用文献	Crystal structure of uncharacterized conserved protein from Geobacillus kaustophilus To be Published

2Z02

Crystal structure of phosphoribosylaminoimidazolesuccinocarboxamide synthase wit ATP from Methanocaldococcus jannaschii
分子名称:	ADENOSINE-5'-TRIPHOSPHATE, CITRIC ACID, Phosphoribosylaminoimidazole-succinocarboxamide synthase, ...
著者	Kanagawa, M, Baba, S, Kuramitsu, S, Yokoyama, S, Kawai, G, Sampei, G, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
登録日	2007-05-06
公開日	2007-11-06
最終更新日	2023-11-01
実験手法	X-RAY DIFFRACTION (2.03 Å)
主引用文献	Crystal structure of phosphoribosylaminoimidazolesuccinocarboxamide synthase from Methanocaldococcus jannaschii To be Published

2YWC

Crystal structure of GMP synthetase from Thermus thermophilus in complex with XMP
分子名称:	GMP synthase [glutamine-hydrolyzing], XANTHOSINE-5'-MONOPHOSPHATE
著者	Baba, S, Kanagawa, M, Kuramitsu, S, Yokoyama, S, Sampei, G, Kawai, G, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
登録日	2007-04-20
公開日	2007-10-23
最終更新日	2023-11-15
実験手法	X-RAY DIFFRACTION (2.2 Å)
主引用文献	Crystal structure of GMP synthetase from Thermus thermophilus To be Published

2YWX

Crystal structure of phosphoribosylaminoimidazole carboxylase catalytic subunit from Methanocaldococcus jannaschii
分子名称:	Phosphoribosylaminoimidazole carboxylase catalytic subunit
著者	Kanagawa, M, Baba, S, Kuramitsu, S, Yokoyama, S, Kawai, G, Sampei, G, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
登録日	2007-04-23
公開日	2007-10-23
最終更新日	2023-10-25
実験手法	X-RAY DIFFRACTION (2.31 Å)
主引用文献	Crystal structure of phosphoribosylaminoimidazole carboxylase catalytic subunit from Methanocaldococcus jannaschii To be Published

2YX5

Crystal Structure of Methanocaldococcus jannaschii PurS, One of the Subunits of Formylglycinamide Ribonucleotide Amidotransferase in the Purine Biosynthetic Pathway
分子名称:	UPF0062 protein MJ1593
著者	Kanagawa, M, Baba, S, Agari, Y, Chen, L.Q, Fu, Z.-Q, Chrzas, J, Wang, B.C, Kuramitsu, S, Yokoyama, S, Kawai, G, Sampei, G, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
登録日	2007-04-24
公開日	2007-10-30
最終更新日	2023-10-25
実験手法	X-RAY DIFFRACTION (2.3 Å)
主引用文献	Crystal Structure of Methanocaldococcus jannaschii PurS, One of the Subunits of Formylglycinamide Ribonucleotide Amidotransferase in the Purine Biosynthetic Pathway To be Published

2YZL

Crystal structure of phosphoribosylaminoimidazole-succinocarboxamide synthase with ADP from Methanocaldococcus jannaschii
分子名称:	ADENOSINE-5'-DIPHOSPHATE, Phosphoribosylaminoimidazole-succinocarboxamide synthase, SULFATE ION
著者	Kanagawa, M, Baba, S, Fukui, K, Kuramitsu, S, Yokoyama, S, Kawai, G, Sampei, G, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
登録日	2007-05-06
公開日	2007-11-06
最終更新日	2023-10-25
実験手法	X-RAY DIFFRACTION (2.2 Å)
主引用文献	Crystal structure of phosphoribosylaminoimidazole-succinocarboxamide synthase with ADP from Methanocaldococcus jannaschii To be Published

2YWV

Crystal structure of SAICAR synthetase from Geobacillus kaustophilus
分子名称:	ADENOSINE-5'-DIPHOSPHATE, MAGNESIUM ION, Phosphoribosylaminoimidazole succinocarboxamide synthetase, ...
著者	Kanagawa, M, Baba, S, Kuramitsu, S, Yokoyama, S, Kawai, G, Sampei, G, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
登録日	2007-04-23
公開日	2007-10-23
最終更新日	2023-10-25
実験手法	X-RAY DIFFRACTION (1.75 Å)
主引用文献	Crystal structure of SAICAR synthetase from Geobacillus kaustophilus To be Published

2YWB

Crystal structure of GMP synthetase from Thermus thermophilus
分子名称:	GMP synthase [glutamine-hydrolyzing]
著者	Baba, S, Kanagawa, M, Yanai, H, Ishii, T, Kuramitsu, S, Yokoyama, S, Sampei, G, Kawai, G, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
登録日	2007-04-20
公開日	2007-10-23
最終更新日	2024-03-13
実験手法	X-RAY DIFFRACTION (2.1 Å)
主引用文献	Crystal structure of GMP synthetase from Thermus thermophilus To be Published

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