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1STC
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BU of 1stc by Molmil
CAMP-DEPENDENT PROTEIN KINASE, ALPHA-CATALYTIC SUBUNIT IN COMPLEX WITH STAUROSPORINE
分子名称: CAMP-DEPENDENT PROTEIN KINASE, PROTEIN KINASE INHIBITOR, STAUROSPORINE
著者Prade, L, Engh, R.A, Girod, A, Kinzel, V, Huber, R, Bossemeyer, D.
登録日1997-10-10
公開日1998-02-25
最終更新日2023-08-09
実験手法X-RAY DIFFRACTION (2.3 Å)
主引用文献Staurosporine-induced conformational changes of cAMP-dependent protein kinase catalytic subunit explain inhibitory potential.
Structure, 5, 1997
7D9X
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BU of 7d9x by Molmil
Highly active mutant W525D of Gamma-glutamyltranspeptidase from Pseudomonas nitroreducens
分子名称: GAMMA-BUTYROLACTONE, GLYCEROL, GLYCINE, ...
著者Hibi, T, Sano, C, Itoh, T, Wakayama, M.
登録日2020-10-14
公開日2021-06-23
最終更新日2023-11-29
実験手法X-RAY DIFFRACTION (1.74 Å)
主引用文献Mutagenesis and structure-based analysis of the role of Tryptophan525 of gamma-glutamyltranspeptidase from Pseudomonas nitroreducens.
Biochem.Biophys.Res.Commun., 534, 2021
7D9E
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BU of 7d9e by Molmil
Gamma-glutamyltranspeptidase from Pseudomonas nitroreducens complexed with L-DON
分子名称: 6-DIAZENYL-5-OXO-L-NORLEUCINE, GLYCEROL, Gamma-glutamyltransferase 1 Threonine peptidase. MEROPS family T03
著者Hibi, T, Sano, C, Itoh, T, Wakayama, M.
登録日2020-10-13
公開日2021-06-23
最終更新日2023-11-29
実験手法X-RAY DIFFRACTION (1.5 Å)
主引用文献Mutagenesis and structure-based analysis of the role of Tryptophan525 of gamma-glutamyltranspeptidase from Pseudomonas nitroreducens.
Biochem.Biophys.Res.Commun., 534, 2021
3A6V
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BU of 3a6v by Molmil
Crystal structure of the MutT protein in MN(II) bound holo form
分子名称: L(+)-TARTARIC ACID, MANGANESE (II) ION, Mutator mutT protein, ...
著者Nakamura, T, Yamagata, Y.
登録日2009-09-09
公開日2009-10-27
最終更新日2023-11-01
実験手法X-RAY DIFFRACTION (2 Å)
主引用文献Structural and dynamic features of the MutT protein in the recognition of nucleotides with the mutagenic 8-oxoguanine base
J.Biol.Chem., 285, 2010
3A6T
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BU of 3a6t by Molmil
Crystal structure of MutT-8-OXO-DGMP complex
分子名称: 8-OXO-2'-DEOXY-GUANOSINE-5'-MONOPHOSPHATE, Mutator mutT protein, SODIUM ION, ...
著者Nakamura, T, Yamagata, Y.
登録日2009-09-09
公開日2009-10-27
最終更新日2023-11-01
実験手法X-RAY DIFFRACTION (1.96 Å)
主引用文献Structural and dynamic features of the MutT protein in the recognition of nucleotides with the mutagenic 8-oxoguanine base
J.Biol.Chem., 285, 2010
3A6U
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Crystal structure of MutT-8-OXO-dGMP-MN(II) complex
分子名称: 8-OXO-2'-DEOXY-GUANOSINE-5'-MONOPHOSPHATE, MANGANESE (II) ION, Mutator mutT protein, ...
著者Nakamura, T, Yamagata, Y.
登録日2009-09-09
公開日2009-10-27
最終更新日2023-11-01
実験手法X-RAY DIFFRACTION (2.56 Å)
主引用文献Structural and dynamic features of the MutT protein in the recognition of nucleotides with the mutagenic 8-oxoguanine base
J.Biol.Chem., 285, 2010
3AJB
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BU of 3ajb by Molmil
Crystal Structure of human Pex3p in complex with N-terminal Pex19p peptide
分子名称: Peroxisomal biogenesis factor 19, Peroxisomal biogenesis factor 3
著者Sato, Y, Shibata, H, Nakatsu, T, Kato, H.
登録日2010-05-27
公開日2010-12-22
最終更新日2024-03-13
実験手法X-RAY DIFFRACTION (2.5 Å)
主引用文献Structural basis for docking of peroxisomal membrane protein carrier Pex19p onto its receptor Pex3p
Embo J., 29, 2010
3A6S
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BU of 3a6s by Molmil
Crystal structure of the MutT protein
分子名称: L(+)-TARTARIC ACID, Mutator mutT protein, SODIUM ION
著者Nakamura, T, Yamagata, Y.
登録日2009-09-09
公開日2009-10-27
最終更新日2024-03-13
実験手法X-RAY DIFFRACTION (1.8 Å)
主引用文献Structural and dynamic features of the MutT protein in the recognition of nucleotides with the mutagenic 8-oxoguanine base
J.Biol.Chem., 285, 2010
7DJR
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BU of 7djr by Molmil
Crystal structure of SARS-CoV-2 main protease (no ligand)
分子名称: 3C-like proteinase, DIMETHYL SULFOXIDE
著者Deetanya, P, Wangkanont, K.
登録日2020-11-21
公開日2021-06-16
最終更新日2023-11-29
実験手法X-RAY DIFFRACTION (1.45 Å)
主引用文献Interaction of 8-anilinonaphthalene-1-sulfonate with SARS-CoV-2 main protease and its application as a fluorescent probe for inhibitor identification.
Comput Struct Biotechnol J, 19, 2021
5XRZ
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BU of 5xrz by Molmil
Structure of a ssDNA bound to the inner DNA binding site of RAD52
分子名称: DNA repair protein RAD52 homolog, POTASSIUM ION, ssDNA (40-MER)
著者Saotome, M, Saito, K, Yasuda, T, Sugiyama, S, Kurumizaka, H, Kagawa, W.
登録日2017-06-11
公開日2018-04-25
最終更新日2023-11-22
実験手法X-RAY DIFFRACTION (3.6 Å)
主引用文献Structural Basis of Homology-Directed DNA Repair Mediated by RAD52
iScience, 3, 2018
5XQY
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Structure of monomeric mutant of REI immunoglobulin light chain variable domain crystallized at pH 8
分子名称: Immunoglobulin kappa variable 1D-33
著者Mine, S, Nakamura, T, Uegaki, K, Hamada, D.
登録日2017-06-07
公開日2017-08-02
最終更新日2023-11-22
実験手法X-RAY DIFFRACTION (2.9 Å)
主引用文献Heat-induced native dimerization prevents amyloid formation by variable domain from immunoglobulin light-chain REI
FEBS J., 284, 2017
5XP1
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Structure of monomeric mutant of REI immunoglobulin light chain variable domain crystallized at pH 6
分子名称: Immunoglobulin kappa variable 1D-33
著者Mine, S, Nakamura, T, Uegaki, K, Hamada, D.
登録日2017-05-31
公開日2017-08-02
最終更新日2023-11-22
実験手法X-RAY DIFFRACTION (2.88 Å)
主引用文献Heat-induced native dimerization prevents amyloid formation by variable domain from immunoglobulin light-chain REI
FEBS J., 284, 2017
3WE6
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BU of 3we6 by Molmil
Crystal structure of anti-Prostaglandin E2 Fab fragment
分子名称: ISOPROPYL ALCOHOL, mAb Fab H fragment, mAb Fab L fragment
著者Sugahara, M, Ago, H, Saino, H, Miyano, M.
登録日2013-07-01
公開日2014-07-02
最終更新日2023-11-08
実験手法X-RAY DIFFRACTION (2.02 Å)
主引用文献Crystal structure of anti-Prostaglandin E2 Fab fragment with Prostaglandin E2
To be Published
5XS0
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BU of 5xs0 by Molmil
Structure of a ssDNA bound to the outer DNA binding site of RAD52
分子名称: DNA repair protein RAD52 homolog, ssDNA (5'-D(*CP*CP*CP*CP*CP*C)-3'), ssDNA (5'-D(*CP*CP*CP*CP*CP*CP*CP*C)-3'), ...
著者Saotome, M, Saito, K, Yasuda, T, Sugiyama, S, Kurumizaka, H, Kagawa, W.
登録日2017-06-11
公開日2018-04-25
最終更新日2023-11-22
実験手法X-RAY DIFFRACTION (3 Å)
主引用文献Structural Basis of Homology-Directed DNA Repair Mediated by RAD52
iScience, 3, 2018
3WPX
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Structure of PomBc4, a periplasmic fragment of PomB from Vibrio alginolyticus
分子名称: PomB
著者Takao, M, Sakuma, M, Zhu, S, Homma, M, Kojima, S, Imada, K.
登録日2014-01-17
公開日2014-09-10
最終更新日2023-11-08
実験手法X-RAY DIFFRACTION (2.3 Å)
主引用文献Conformational change in the periplasmic region of the flagellar stator coupled with the assembly around the rotor
Proc. Natl. Acad. Sci. U.S.A., 111, 2014
7WIS
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BU of 7wis by Molmil
Catalytic intermediate structure of N381A mutant of copper amine oxidase from Arthrobacter globiformis
分子名称: COPPER (II) ION, GLYCEROL, PHENYLACETALDEHYDE, ...
著者Murakawa, T, Okajima, T.
登録日2022-01-04
公開日2022-11-16
最終更新日2023-11-29
実験手法X-RAY DIFFRACTION (1.9 Å)
主引用文献Molecular mechanism of a large conformational change of the quinone cofactor in the semiquinone intermediate of bacterial copper amine oxidase.
Chem Sci, 13, 2022
1UCY
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THROMBIN COMPLEXED WITH FIBRINOPEPTIDE A ALPHA (RESIDUES 7-19). THREE COMPLEXES, ONE WITH EPSILON-THROMBIN AND TWO WITH ALPHA-THROMBIN
分子名称: FIBRINOPEPTIDE A-ALPHA, THROMBIN
著者Martin, P, Edwards, B.
登録日1996-08-30
公開日1997-02-12
最終更新日2023-11-15
実験手法X-RAY DIFFRACTION (2.2 Å)
主引用文献Bovine thrombin complexed with an uncleavable analog of residues 7-19 of fibrinogen A alpha: geometry of the catalytic triad and interactions of the P1', P2', and P3' substrate residues.
Biochemistry, 35, 1996
7WIR
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BU of 7wir by Molmil
Holo form of N381A mutant of copper amine oxidase from Arthrobacter globiformis
分子名称: COPPER (II) ION, GLYCEROL, Phenylethylamine oxidase
著者Murakawa, T, Okajima, T.
登録日2022-01-04
公開日2022-11-16
最終更新日2023-11-29
実験手法X-RAY DIFFRACTION (1.5 Å)
主引用文献Molecular mechanism of a large conformational change of the quinone cofactor in the semiquinone intermediate of bacterial copper amine oxidase.
Chem Sci, 13, 2022
7WKI
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Structure of the ultra-affinity complex between CFH and a nanobody
分子名称: Anti-CFH nanobody (VHH), Complement factor H
著者Caaveiro, J.M.M, Yokoo, T, Tsumoto, K.
登録日2022-01-10
公開日2022-11-23
最終更新日2023-11-29
実験手法X-RAY DIFFRACTION (2.6 Å)
主引用文献Antibody recognition of complement factor H reveals a flexible loop involved in atypical hemolytic uremic syndrome pathogenesis.
J.Biol.Chem., 298, 2022
3B24
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Hsp90 alpha N-terminal domain in complex with an aminotriazine fragment molecule
分子名称: 4-(ethylsulfanyl)-6-methyl-1,3,5-triazin-2-amine, Heat shock protein HSP 90-alpha, MAGNESIUM ION
著者Fukami, T.A, Ono, N.
登録日2011-07-21
公開日2011-09-14
最終更新日2024-03-13
実験手法X-RAY DIFFRACTION (1.7 Å)
主引用文献Lead generation of heat shock protein 90 inhibitors by a combination of fragment-based approach, virtual screening, and structure-based drug design
Bioorg.Med.Chem.Lett., 21, 2011
1UI6
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Crystal structure of gamma-butyrolactone receptor (ArpA-like protein)
分子名称: A-factor receptor homolog
著者Natsume, R, Senda, T, Horinouchi, S.
登録日2003-07-15
公開日2004-07-27
最終更新日2023-10-25
実験手法X-RAY DIFFRACTION (2.4 Å)
主引用文献Crystal structure of a gamma-butyrolactone autoregulator receptor protein in Streptomyces coelicolor A3(2)
J.Mol.Biol., 336, 2004
1UI5
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Crystal structure of gamma-butyrolactone receptor (ArpA like protein)
分子名称: A-factor receptor homolog
著者Natsume, R, Senda, T, Horinouchi, S.
登録日2003-07-15
公開日2004-07-27
最終更新日2023-12-27
実験手法X-RAY DIFFRACTION (2.4 Å)
主引用文献Crystal structure of a gamma-butyrolactone autoregulator receptor protein in Streptomyces coelicolor A3(2)
J.Mol.Biol., 336, 2004
3WPW
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Structure of PomBc5, a periplasmic fragment of PomB from Vibrio
分子名称: ACETATE ION, PomB
著者Takao, M, Sakuma, M, Zhu, S, Homma, M, Kojima, S, Imada, K.
登録日2014-01-17
公開日2014-09-10
最終更新日2024-03-20
実験手法X-RAY DIFFRACTION (2 Å)
主引用文献Conformational change in the periplasmic region of the flagellar stator coupled with the assembly around the rotor
Proc. Natl. Acad. Sci. U.S.A., 111, 2014
3WIF
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BU of 3wif by Molmil
Crystal structure of anti-prostaglandin E2 Fab fragment 9Cl-PGF2beta complex
分子名称: (Z)-7-[(1R,2R,3R,5R)-5-chloranyl-3-oxidanyl-2-[(E,3S)-3-oxidanyloct-1-enyl]cyclopentyl]hept-5-enoic acid, mAb Fab H fragment, mAb Fab L fragment
著者Sugahara, M, Ago, H, Saino, H, Miyano, M.
登録日2013-09-12
公開日2014-09-17
最終更新日2023-11-08
実験手法X-RAY DIFFRACTION (1.7 Å)
主引用文献Crystal structure of anti-Prostaglandin E2 Fab fragment with Prostaglandin E2
To be Published
3B27
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Hsp90 alpha N-terminal domain in complex with an inhibitor Ro4919127
分子名称: 4-(2-chlorophenyl)-6-(methylsulfanyl)-1,3,5-triazin-2-amine, Heat shock protein HSP 90-alpha
著者Fukami, T.A, Ono, N.
登録日2011-07-21
公開日2011-09-14
最終更新日2024-03-13
実験手法X-RAY DIFFRACTION (1.5 Å)
主引用文献Lead generation of heat shock protein 90 inhibitors by a combination of fragment-based approach, virtual screening, and structure-based drug design
Bioorg.Med.Chem.Lett., 21, 2011

223790

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