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6IWH
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BU of 6iwh by Molmil
Crystal structure of rhesus macaque MHC class I molecule Mamu-B*05104 complexed with C14-GGGI lipopeptide
分子名称: 1,2-ETHANEDIOL, Beta-2-microglobulin, C14-GGGI lipopeptide, ...
著者Yamamoto, Y, Morita, D, Sugita, M.
登録日2018-12-05
公開日2019-08-14
最終更新日2023-11-22
実験手法X-RAY DIFFRACTION (1.95 Å)
主引用文献Identification and Structure of an MHC Class I-Encoded Protein with the Potential to PresentN-Myristoylated 4-mer Peptides to T Cells.
J Immunol., 202, 2019
6IWG
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BU of 6iwg by Molmil
Crystal structure of rhesus macaque MHC class I molecule Mamu-B*05104 complexed with N-myristoylated 4-mer lipopeptide derived from SIV nef protein
分子名称: 1,2-ETHANEDIOL, BORIC ACID, Beta-2-microglobulin, ...
著者Yamamoto, Y, Morita, D, Sugita, M.
登録日2018-12-05
公開日2019-08-14
最終更新日2023-11-22
実験手法X-RAY DIFFRACTION (1.8 Å)
主引用文献Identification and Structure of an MHC Class I-Encoded Protein with the Potential to PresentN-Myristoylated 4-mer Peptides to T Cells.
J Immunol., 202, 2019
6LTB
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BU of 6ltb by Molmil
Crystal Structure of Nonribosomal peptide synthetases (NRPS), FmoA3 (S1046A)-AMPPNP bound form
分子名称: Nonribosomal peptide synthetase, PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER
著者Senda, T, Harada, A.
登録日2020-01-22
公開日2021-02-24
最終更新日2023-11-29
実験手法X-RAY DIFFRACTION (3.1 Å)
主引用文献Structural and Functional Analyses of the Tridomain-Nonribosomal Peptide Synthetase FmoA3 for 4-Methyloxazoline Ring Formation.
Angew.Chem.Int.Ed.Engl., 60, 2021
6LTA
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BU of 6lta by Molmil
Crystal Structure of Nonribosomal peptide synthetases (NRPS), FmoA3 (S1046A)
分子名称: ACRYLIC ACID, Nonribosomal peptide synthetase
著者Senda, T, Harada, A.
登録日2020-01-22
公開日2021-02-24
最終更新日2023-11-29
実験手法X-RAY DIFFRACTION (2.45 Å)
主引用文献Structural and Functional Analyses of the Tridomain-Nonribosomal Peptide Synthetase FmoA3 for 4-Methyloxazoline Ring Formation.
Angew.Chem.Int.Ed.Engl., 60, 2021
6LTC
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BU of 6ltc by Molmil
Crystal Structure of Nonribosomal peptide synthetases (NRPS), FmoA3 (S1046A)-alpha-methyl-L-serine-AMP bound form
分子名称: ADENOSINE MONOPHOSPHATE, CHLORIDE ION, Nonribosomal peptide synthetase, ...
著者Senda, T, Harada, A.
登録日2020-01-22
公開日2021-03-10
最終更新日2023-11-29
実験手法X-RAY DIFFRACTION (3.3 Å)
主引用文献Structural and Functional Analyses of the Tridomain-Nonribosomal Peptide Synthetase FmoA3 for 4-Methyloxazoline Ring Formation.
Angew.Chem.Int.Ed.Engl., 60, 2021
6LTD
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BU of 6ltd by Molmil
Crystal Structure of Nonribosomal peptide synthetases (NRPS), FmoA3 (S1046A)-alpha-methyl-L-serine-AMP bound form
分子名称: ADENOSINE MONOPHOSPHATE, Nonribosomal peptide synthetase, alpha-methyl-L-serine
著者Senda, T, Harada, A.
登録日2020-01-22
公開日2021-03-10
最終更新日2023-11-29
実験手法X-RAY DIFFRACTION (4.1 Å)
主引用文献Structural and Functional Analyses of the Tridomain-Nonribosomal Peptide Synthetase FmoA3 for 4-Methyloxazoline Ring Formation.
Angew.Chem.Int.Ed.Engl., 60, 2021
6N0P
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BU of 6n0p by Molmil
BRAF in complex with N-(3-(2-(2-hydroxyethoxy)-6-morpholinopyridin-4-yl)-4-methylphenyl)-2-(trifluoromethyl)isonicotinamide (LXH254)
分子名称: N-{3-[2-(2-hydroxyethoxy)-6-(morpholin-4-yl)pyridin-4-yl]-4-methylphenyl}-2-(trifluoromethyl)pyridine-4-carboxamide, Serine/threonine-protein kinase B-raf
著者Mamo, M, Appleton, B.A.
登録日2018-11-07
公開日2019-09-04
最終更新日2024-03-13
実験手法X-RAY DIFFRACTION (2.37 Å)
主引用文献Design and Discovery ofN-(3-(2-(2-Hydroxyethoxy)-6-morpholinopyridin-4-yl)-4-methylphenyl)-2-(trifluoromethyl)isonicotinamide, a Selective, Efficacious, and Well-Tolerated RAF Inhibitor Targeting RAS Mutant Cancers: The Path to the Clinic.
J.Med.Chem., 63, 2020
8IB1
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BU of 8ib1 by Molmil
Structure of the LAH31 Fab bound to an influenza virus HA epitope peptide
分子名称: Hemagglutinin HA2 chain, LAH31 Fab heavy chain, LAH31 Fab light chain
著者Suzuki, T, Hashiguchi, T.
登録日2023-02-09
公開日2023-07-26
最終更新日2023-08-30
実験手法X-RAY DIFFRACTION (1.95 Å)
主引用文献Structural basis for cross-group recognition of an influenza virus hemagglutinin antibody that targets postfusion stabilized epitope.
Plos Pathog., 19, 2023
6AIT
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BU of 6ait by Molmil
Crystal structure of E. coli BepA
分子名称: 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL, Beta-barrel assembly-enhancing protease, ZINC ION
著者Umar, M.S.M, Tanaka, Y, Kamikubo, H, Tsukazaki, T.
登録日2018-08-24
公開日2018-12-26
最終更新日2023-11-22
実験手法X-RAY DIFFRACTION (2.598 Å)
主引用文献Structural Basis for the Function of the beta-Barrel Assembly-Enhancing Protease BepA.
J. Mol. Biol., 431, 2019
5H18
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BU of 5h18 by Molmil
Crystal structure of catalytic domain of UGGT (UDP-glucose-bound form) from Thermomyces dupontii
分子名称: CALCIUM ION, GLYCEROL, UGGT, ...
著者Satoh, T, Zhu, T, Toshimori, T, Kamikubo, H, Uchihashi, T, Kato, K.
登録日2016-10-08
公開日2017-09-27
最終更新日2017-11-01
実験手法X-RAY DIFFRACTION (1.4 Å)
主引用文献Visualisation of a flexible modular structure of the ER folding-sensor enzyme UGGT.
Sci Rep, 7, 2017
6N0Q
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BU of 6n0q by Molmil
BRAF in complex with N-(4-methyl-3-(1-methyl-2-oxo-2,3-dihydro-1H-benzo[d]imidazol-5-yl)phenyl)-3-(trifluoromethyl)benzamide.
分子名称: N-[4-methyl-3-(1-methyl-2-oxo-2,3-dihydro-1H-benzimidazol-5-yl)phenyl]-3-(trifluoromethyl)benzamide, Serine/threonine-protein kinase B-raf
著者Mamo, M, Appleton, B.A.
登録日2018-11-07
公開日2019-10-23
最終更新日2024-03-13
実験手法X-RAY DIFFRACTION (2.04 Å)
主引用文献Design and Discovery ofN-(3-(2-(2-Hydroxyethoxy)-6-morpholinopyridin-4-yl)-4-methylphenyl)-2-(trifluoromethyl)isonicotinamide, a Selective, Efficacious, and Well-Tolerated RAF Inhibitor Targeting RAS Mutant Cancers: The Path to the Clinic.
J.Med.Chem., 63, 2020
1X67
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BU of 1x67 by Molmil
Solution structure of the cofilin homology domain of HIP-55 (drebrin-like protein)
分子名称: Drebrin-like protein
著者Goroncy, A.K, Kigawa, T, Koshiba, S, Sato, M, Kobayashi, N, Tochio, N, Inoue, M, Yokoyama, S, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
登録日2005-05-17
公開日2005-11-17
最終更新日2024-05-29
実験手法SOLUTION NMR
主引用文献NMR solution structures of actin depolymerizing factor homology domains.
Protein Sci., 18, 2009
2RR7
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BU of 2rr7 by Molmil
Microtubule Binding Domain of DYNEIN-C
分子名称: Dynein heavy chain 9
著者Kato, Y, Yagi, T, Ohki, S, Burgess, S, Honda, S, Kamiya, R, Tanokura, M.
登録日2010-06-04
公開日2011-06-08
最終更新日2024-05-01
実験手法SOLUTION NMR
主引用文献Structure of the microtubule-binding domain of flagellar dynein
Structure, 22, 2014
2ROO
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BU of 2roo by Molmil
Solution structure of Magi4, a spider toxin from Macrothele gigas
分子名称: Neurotoxin magi-4
著者Yamaji, N.
登録日2008-04-04
公開日2009-04-07
最終更新日2022-03-16
実験手法SOLUTION NMR
主引用文献Chemical synthesis and solution structure of a spider toxin that affects the inactivation of mammalian sodium channels
To be Published
8J4C
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BU of 8j4c by Molmil
YeeE(TsuA)-YeeD(TsuB) complex for thiosulfate uptake
分子名称: (2R)-2,3-dihydroxypropyl (9Z)-octadec-9-enoate, Spirochaeta thermophila YeeE(TsuA)-YeeD(TsuB),UPF0033 domain-containing protein, SirA-like domain-containing protein (chimera), ...
著者Ikei, M, Miyazaki, R, Monden, K, Naito, Y, Takeuchi, A, Takahashi, Y.S, Tanaka, Y, Ichikawa, M, Tsukazaki, T.
登録日2023-04-19
公開日2024-03-27
実験手法X-RAY DIFFRACTION (3.34 Å)
主引用文献Structure and function of YeeE-YeeD complex for sophisticated thiosulfate uptake
To Be Published
5GZK
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BU of 5gzk by Molmil
Endo-beta-1,2-glucanase from Chitinophaga pinensis - sophorotriose and glucose complex
分子名称: CHLORIDE ION, DI(HYDROXYETHYL)ETHER, PENTAETHYLENE GLYCOL, ...
著者Abe, K, Nakajima, M, Arakawa, T, Fushinobu, S, Taguchi, H.
登録日2016-09-28
公開日2017-03-15
最終更新日2023-11-08
実験手法X-RAY DIFFRACTION (1.7 Å)
主引用文献Biochemical and structural analyses of a bacterial endo-beta-1,2-glucanase reveal a new glycoside hydrolase family
J. Biol. Chem., 292, 2017
2OH4
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BU of 2oh4 by Molmil
Crystal structure of Vegfr2 with a benzimidazole-urea inhibitor
分子名称: METHYL (5-{4-[({[2-FLUORO-5-(TRIFLUOROMETHYL)PHENYL]AMINO}CARBONYL)AMINO]PHENOXY}-1H-BENZIMIDAZOL-2-YL)CARBAMATE, SULFATE ION, Vascular endothelial growth factor receptor 2
著者Nolte, R.T, Wang, L.
登録日2007-01-09
公開日2007-09-18
最終更新日2023-11-15
実験手法X-RAY DIFFRACTION (2.05 Å)
主引用文献Discovery of Novel Benzimidazoles as Potent Inhibitors of TIE-2 and VEGFR-2 Tyrosine Kinase Receptors.
J.Med.Chem., 50, 2007
5GZH
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BU of 5gzh by Molmil
Endo-beta-1,2-glucanase from Chitinophaga pinensis - ligand free form
分子名称: Endo-beta-1,2-glucanase, IODIDE ION, alpha-D-glucopyranose-(1-1)-alpha-D-glucopyranose
著者Abe, K, Nakajima, M, Arakawa, T, Fushinobu, S, Taguchi, H.
登録日2016-09-28
公開日2017-03-15
最終更新日2023-11-08
実験手法X-RAY DIFFRACTION (1.8 Å)
主引用文献Biochemical and structural analyses of a bacterial endo-beta-1,2-glucanase reveal a new glycoside hydrolase family
J. Biol. Chem., 292, 2017
1LMT
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BU of 1lmt by Molmil
STRUCTURE OF A CONFORMATIONALLY CONSTRAINED ARG-GLY-ASP SEQUENCE INSERTED INTO HUMAN LYSOZYME
分子名称: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, CHLORIDE ION, HUMAN LYSOZYME
著者Matsushima, M, Song, H.
登録日1995-01-13
公開日1995-03-31
最終更新日2020-07-29
実験手法X-RAY DIFFRACTION (1.6 Å)
主引用文献Structure of a conformationally constrained Arg-Gly-Asp sequence inserted into human lysozyme.
J.Biol.Chem., 270, 1995
4HA6
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BU of 4ha6 by Molmil
Crystal structure of pyridoxine 4-oxidase - pyridoxamine complex
分子名称: 4-(AMINOMETHYL)-5-(HYDROXYMETHYL)-2-METHYLPYRIDIN-3-OL, FLAVIN-ADENINE DINUCLEOTIDE, GLYCEROL, ...
著者Mugo, A.N, Kobayashi, J, Mikami, B, Yagi, T.
登録日2012-09-25
公開日2013-06-05
最終更新日2023-11-08
実験手法X-RAY DIFFRACTION (2.095 Å)
主引用文献Crystal structure of pyridoxine 4-oxidase from Mesorhizobium loti.
Biochim.Biophys.Acta, 1834, 2013
3VJK
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BU of 3vjk by Molmil
Crystal structure of human depiptidyl peptidase IV (DPP-4) in complex with MP-513
分子名称: 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, Dipeptidyl peptidase 4, ...
著者Akahoshi, F, Kishida, H, Miyaguchi, I, Yoshida, T, Ishii, S.
登録日2011-10-24
公開日2012-10-24
最終更新日2023-11-08
実験手法X-RAY DIFFRACTION (2.49 Å)
主引用文献Discovery and preclinical profile of teneligliptin (3-[(2S,4S)-4-[4-(3-methyl-1-phenyl-1H-pyrazol-5-yl)piperazin-1-yl]pyrrolidin-2-ylcarbonyl]thiazolidine): A highly potent, selective, long-lasting and orally active dipeptidyl peptidase IV inhibitor for the treatment of type 2 diabetes
Bioorg.Med.Chem., 20, 2012
6IQG
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BU of 6iqg by Molmil
X-ray crystal structure of Fc and peptide complex
分子名称: 18-mer peptide G(HCS)DCAYHRGELVWCT(HCS)H(NH2), 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-2)-alpha-D-mannopyranose-(1-3)-[2-acetamido-2-deoxy-beta-D-glucopyranose-(1-2)-alpha-D-mannopyranose-(1-6)]beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-[alpha-L-fucopyranose-(1-6)]2-acetamido-2-deoxy-beta-D-glucopyranose, CHLORIDE ION, ...
著者Adachi, M, Ito, Y.
登録日2018-11-08
公開日2019-02-13
最終更新日2024-03-13
実験手法X-RAY DIFFRACTION (2.998 Å)
主引用文献Site-Specific Chemical Conjugation of Antibodies by Using Affinity Peptide for the Development of Therapeutic Antibody Format.
Bioconjug. Chem., 30, 2019
6IQH
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BU of 6iqh by Molmil
X-ray crystal structure of covalent-bonded complex of Fc and peptide
分子名称: 17-mer peptide (GPDCAYHKGELVWCTFH), 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-2)-alpha-D-mannopyranose-(1-3)-[2-acetamido-2-deoxy-beta-D-glucopyranose-(1-2)-alpha-D-mannopyranose-(1-6)]beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-[alpha-L-fucopyranose-(1-6)]2-acetamido-2-deoxy-beta-D-glucopyranose, Immunoglobulin gamma-1 heavy chain
著者Adachi, M, Ito, Y.
登録日2018-11-08
公開日2019-02-13
最終更新日2024-01-24
実験手法X-RAY DIFFRACTION (2.999 Å)
主引用文献Site-Specific Chemical Conjugation of Antibodies by Using Affinity Peptide for the Development of Therapeutic Antibody Format.
Bioconjug. Chem., 30, 2019
3WU8
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BU of 3wu8 by Molmil
Spatiotemporal development of soaked protein crystal; derivative 1080 sec
分子名称: Lysozyme C, PLATINUM (IV) ION
著者Mizutani, R, Saiga, R.
登録日2014-04-23
公開日2014-07-30
最終更新日2023-11-08
実験手法X-RAY DIFFRACTION (2 Å)
主引用文献Spatiotemporal development of soaked protein crystal
Sci Rep, 4, 2014
3WUA
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BU of 3wua by Molmil
Spatiotemporal development of soaked protein crystal; derivative 3610 sec
分子名称: Lysozyme C, PLATINUM (IV) ION
著者Mizutani, R, Saiga, R.
登録日2014-04-23
公開日2014-07-30
最終更新日2023-11-08
実験手法X-RAY DIFFRACTION (2 Å)
主引用文献Spatiotemporal development of soaked protein crystal
Sci Rep, 4, 2014

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