2D42
 
 | | Crystal structure analysis of a non-toxic crystal protein from Bacillus thuringiensis | | 分子名称: | non-toxic crystal protein | | 著者 | Akiba, T, Higuchi, K, Mizuki, E, Ekino, K, Shin, T, Ohba, M, Kanai, R, Harata, K. | | 登録日 | 2005-10-05 | | 公開日 | 2006-01-17 | | 最終更新日 | 2024-03-13 | | 実験手法 | X-RAY DIFFRACTION (2.07 Å) | | 主引用文献 | Nontoxic crystal protein from Bacillus thuringiensis demonstrates a remarkable structural similarity to beta-pore-forming toxins
Proteins, 63, 2006
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3W4K
 | | Crystal Structure of human DAAO in complex with coumpound 13 | | 分子名称: | 3-hydroxy-6-(2-phenylethyl)pyridazin-4(1H)-one, D-amino-acid oxidase, FLAVIN-ADENINE DINUCLEOTIDE | | 著者 | Hondo, T, Warizaya, M, Niimi, T, Namatame, I, Yamaguchi, T, Nakanishi, K, Hamajima, T, Harada, K, Sakashita, H, Matsumoto, Y, Orita, M, Watanabe, T, Takeuchi, M. | | 登録日 | 2013-01-09 | | 公開日 | 2013-05-29 | | 最終更新日 | 2024-03-20 | | 実験手法 | X-RAY DIFFRACTION (2.86 Å) | | 主引用文献 | 4-Hydroxypyridazin-3(2H)-one Derivatives as Novel d-Amino Acid Oxidase Inhibitors.
J.Med.Chem., 56, 2013
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3W4I
 | | Crystal Structure of human DAAO in complex with coumpound 8 | | 分子名称: | D-amino-acid oxidase, FLAVIN-ADENINE DINUCLEOTIDE, pyridine-2,3-diol | | 著者 | Hondo, T, Warizaya, M, Niimi, T, Namatame, I, Yamaguchi, T, Nakanishi, K, Hamajima, T, Harada, K, Sakashita, H, Matsumoto, Y, Orita, M, Watanabe, T, Takeuchi, M. | | 登録日 | 2013-01-09 | | 公開日 | 2013-05-29 | | 最終更新日 | 2024-03-20 | | 実験手法 | X-RAY DIFFRACTION (2.5 Å) | | 主引用文献 | 4-Hydroxypyridazin-3(2H)-one Derivatives as Novel d-Amino Acid Oxidase Inhibitors.
J.Med.Chem., 56, 2013
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3W4J
 | | Crystal Structure of human DAAO in complex with coumpound 12 | | 分子名称: | 3-hydroxy-5-(2-phenylethyl)pyridin-2(1H)-one, D-amino-acid oxidase, FLAVIN-ADENINE DINUCLEOTIDE | | 著者 | Hondo, T, Warizaya, M, Niimi, T, Namatame, I, Yamaguchi, T, Nakanishi, K, Hamajima, T, Harada, K, Sakashita, H, Matsumoto, Y, Orita, M, Watanabe, T, Takeuchi, M. | | 登録日 | 2013-01-09 | | 公開日 | 2013-05-29 | | 最終更新日 | 2024-03-20 | | 実験手法 | X-RAY DIFFRACTION (2.74 Å) | | 主引用文献 | 4-Hydroxypyridazin-3(2H)-one Derivatives as Novel d-Amino Acid Oxidase Inhibitors.
J.Med.Chem., 56, 2013
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3WN6
 | | Crystal structure of alpha-amylase AmyI-1 from Oryza sativa | | 分子名称: | Alpha-amylase, CALCIUM ION, D(-)-TARTARIC ACID, ... | | 著者 | Ochiai, A, Sugai, H, Harada, K, Tanaka, S, Ishiyama, Y, Ito, K, Tanaka, T, Uchiumi, T, Taniguchi, M, Mitsui, T. | | 登録日 | 2013-12-05 | | 公開日 | 2014-09-10 | | 最終更新日 | 2023-11-08 | | 実験手法 | X-RAY DIFFRACTION (2.16 Å) | | 主引用文献 | Crystal structure of alpha-amylase from Oryza sativa: molecular insights into enzyme activity and thermostability
Biosci.Biotechnol.Biochem., 78, 2014
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2DWX
 | | Co-crystal Structure Analysis of GGA1-GAE with the WNSF motif | | 分子名称: | ADP-ribosylation factor-binding protein GGA1, hinge peptide from ADP-ribosylation factor binding protein GGA1 | | 著者 | Inoue, M, Shiba, T, Yamada, Y, Ihara, K, Kawasaki, M, Kato, R, Nakayama, K, Wakatsuki, S. | | 登録日 | 2006-08-21 | | 公開日 | 2007-04-17 | | 最終更新日 | 2023-10-25 | | 実験手法 | X-RAY DIFFRACTION (2.55 Å) | | 主引用文献 | Molecular Basis for Autoregulatory Interaction Between GAE Domain and Hinge Region of GGA1
Traffic, 8, 2007
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2EIX
 | | The Structure of Physarum polycephalum cytochrome b5 reductase | | 分子名称: | FLAVIN-ADENINE DINUCLEOTIDE, GLYCEROL, IODIDE ION, ... | | 著者 | Kim, S.W, Suga, M, Ogasahara, K, Ikegami, T, Minami, Y, Yubisui, T, Tsukihara, T. | | 登録日 | 2007-03-14 | | 公開日 | 2007-04-17 | | 最終更新日 | 2023-10-25 | | 実験手法 | X-RAY DIFFRACTION (1.56 Å) | | 主引用文献 | Structure of Physarum polycephalum cytochrome b5 reductase at 1.56 A resolution.
Acta Crystallogr.,Sect.F, 63, 2007
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5CPI
 | | Nucleosome containing unmethylated Sat2R DNA | | 分子名称: | DNA (146-MER), Histone H2A type 1-B/E, Histone H2B type 1-J, ... | | 著者 | Osakabe, A, Arimura, Y, Adachi, F, Maehara, K, Ohkawa, Y, Kurumizaka, H. | | 登録日 | 2015-07-21 | | 公開日 | 2015-10-28 | | 最終更新日 | 2023-11-08 | | 実験手法 | X-RAY DIFFRACTION (2.902 Å) | | 主引用文献 | Influence of DNA methylation on positioning and DNA flexibility of nucleosomes with pericentric satellite DNA.
Open Biology, 5, 2015
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5CPK
 | | Nucleosome containing methylated Sat2L DNA | | 分子名称: | DNA (145-MER), Histone H2A type 1-B/E, Histone H2B type 1-J, ... | | 著者 | Osakabe, A, Arimura, Y, Adachi, F, Maehara, K, Ohkawa, Y, Kurumizaka, H. | | 登録日 | 2015-07-21 | | 公開日 | 2015-10-28 | | 最終更新日 | 2023-11-08 | | 実験手法 | X-RAY DIFFRACTION (2.632 Å) | | 主引用文献 | Influence of DNA methylation on positioning and DNA flexibility of nucleosomes with pericentric satellite DNA.
Open Biology, 5, 2015
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5CPJ
 | | Nucleosome containing methylated Sat2R DNA | | 分子名称: | DNA (146-MER), Histone H2A type 1-B/E, Histone H2B type 1-J, ... | | 著者 | Osakabe, A, Arimura, Y, Adachi, F, Maehara, K, Ohkawa, Y, Kurumizaka, H. | | 登録日 | 2015-07-21 | | 公開日 | 2015-10-28 | | 最終更新日 | 2023-11-08 | | 実験手法 | X-RAY DIFFRACTION (3.15 Å) | | 主引用文献 | Influence of DNA methylation on positioning and DNA flexibility of nucleosomes with pericentric satellite DNA.
Open Biology, 5, 2015
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2DWY
 | | Crystal Structure Analysis of GGA1-GAE | | 分子名称: | ADP-RIBOSYLATION FACTOR BINDING PROTEIN GGA1 | | 著者 | Inoue, M, Shiba, T, Yamada, Y, Ihara, K, Kawasaki, M, Kato, R, Nakayama, K, Wakatsuki, S. | | 登録日 | 2006-08-21 | | 公開日 | 2007-04-17 | | 最終更新日 | 2023-10-25 | | 実験手法 | X-RAY DIFFRACTION (2.3 Å) | | 主引用文献 | Molecular Basis for Autoregulatory Interaction Between GAE Domain and Hinge Region of GGA1
Traffic, 8, 2007
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1IU5
 | | X-ray Crystal Structure of the rubredoxin mutant from Pyrococcus Furiosus | | 分子名称: | FE (III) ION, rubredoxin | | 著者 | Chatake, T, Kurihara, K, Tanaka, I, Tsyba, I, Bau, R, Jenney, F.E, Adams, M.W.W, Niimura, N. | | 登録日 | 2002-02-27 | | 公開日 | 2002-08-27 | | 最終更新日 | 2023-10-25 | | 実験手法 | X-RAY DIFFRACTION (1.5 Å) | | 主引用文献 | A neutron crystallographic analysis of a rubredoxin mutant at 1.6 A resolution.
Acta Crystallogr.,Sect.D, 60, 2004
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1IU6
 | | Neutron Crystal Structure of the rubredoxin mutant from Pyrococcus Furiosus | | 分子名称: | FE (III) ION, rubredoxin | | 著者 | Chatake, T, Kurihara, K, Tanaka, I, Tsyba, I, Bau, R, Jenney, F.E, Adams, M.W.W, Niimura, N. | | 登録日 | 2002-02-27 | | 公開日 | 2002-08-27 | | 最終更新日 | 2023-12-27 | | 実験手法 | NEUTRON DIFFRACTION (1.6 Å) | | 主引用文献 | A neutron crystallographic analysis of a rubredoxin mutant at 1.6 A resolution.
Acta Crystallogr.,Sect.D, 60, 2004
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1JKA
 | | HUMAN LYSOZYME MUTANT WITH GLU 35 REPLACED BY ASP | | 分子名称: | LYSOZYME, NITRATE ION | | 著者 | Muraki, M, Harata, K, Goda, S, Nagahora, H. | | 登録日 | 1996-11-13 | | 公開日 | 1997-05-15 | | 最終更新日 | 2023-08-09 | | 実験手法 | X-RAY DIFFRACTION (1.66 Å) | | 主引用文献 | Importance of van der Waals contact between Glu 35 and Trp 109 to the catalytic action of human lysozyme.
Protein Sci., 6, 1997
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1JKB
 | | HUMAN LYSOZYME MUTANT WITH GLU 35 REPLACED BY ALA | | 分子名称: | LYSOZYME, NITRATE ION | | 著者 | Muraki, M, Harata, K, Goda, S, Nagahora, H. | | 登録日 | 1996-11-13 | | 公開日 | 1997-05-15 | | 最終更新日 | 2023-08-09 | | 実験手法 | X-RAY DIFFRACTION (1.66 Å) | | 主引用文献 | Importance of van der Waals contact between Glu 35 and Trp 109 to the catalytic action of human lysozyme.
Protein Sci., 6, 1997
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1JKD
 | | HUMAN LYSOZYME MUTANT WITH TRP 109 REPLACED BY ALA | | 分子名称: | LYSOZYME, NITRATE ION | | 著者 | Muraki, M, Harata, K, Goda, S, Nagahora, H. | | 登録日 | 1996-11-13 | | 公開日 | 1997-05-15 | | 最終更新日 | 2023-08-09 | | 実験手法 | X-RAY DIFFRACTION (1.8 Å) | | 主引用文献 | Importance of van der Waals contact between Glu 35 and Trp 109 to the catalytic action of human lysozyme.
Protein Sci., 6, 1997
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6K7C
 | | Dimeric Shewanella violacea cytochrome c5 | | 分子名称: | HEME C, NITRATE ION, Soluble cytochrome cA | | 著者 | Yang, H, Yamanaka, M, Nagao, S, Yasuhara, K, Shibata, N, Higuchi, Y, Hirota, S. | | 登録日 | 2019-06-07 | | 公開日 | 2019-09-04 | | 最終更新日 | 2023-11-22 | | 実験手法 | X-RAY DIFFRACTION (1.15 Å) | | 主引用文献 | Protein surface charge effect on 3D domain swapping in cells for c-type cytochromes.
Biochim Biophys Acta Proteins Proteom, 1867, 2019
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1JKC
 | | HUMAN LYSOZYME MUTANT WITH TRP 109 REPLACED BY PHE | | 分子名称: | LYSOZYME, NITRATE ION | | 著者 | Muraki, M, Harata, K, Goda, S, Nagahora, H. | | 登録日 | 1996-11-13 | | 公開日 | 1997-05-15 | | 最終更新日 | 2023-08-09 | | 実験手法 | X-RAY DIFFRACTION (1.6 Å) | | 主引用文献 | Importance of van der Waals contact between Glu 35 and Trp 109 to the catalytic action of human lysozyme.
Protein Sci., 6, 1997
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1Z6I
 | | Crystal structure of the ectodomain of Drosophila transmembrane receptor PGRP-LCa | | 分子名称: | 2-acetamido-2-deoxy-beta-D-glucopyranose, Peptidoglycan-recognition protein-LC, SULFATE ION | | 著者 | Chang, C.-I, Ihara, K, Chelliah, Y, Mengin-Lecreulx, D, Wakatsuki, S, Deisenhofer, J. | | 登録日 | 2005-03-22 | | 公開日 | 2005-07-19 | | 最終更新日 | 2020-07-29 | | 実験手法 | X-RAY DIFFRACTION (2.5 Å) | | 主引用文献 | Structure of the ectodomain of Drosophila peptidoglycan-recognition protein LCa suggests a molecular mechanism for pattern recognition
Proc.Natl.Acad.Sci.Usa, 102, 2005
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1UBZ
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1UC0
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2LMK
 | | Solution Structure of Mouse Pheromone ESP1 | | 分子名称: | Exocrine gland-secreting peptide 1 | | 著者 | Yoshinaga, S, Sato, T, Hirakane, M, Esaki, K, Hamaguchi, T, Haga-Yamanaka, S, Tsunoda, M, Kimoto, H, Shimada, I, Touhara, K, Terasawa, H. | | 登録日 | 2011-12-06 | | 公開日 | 2013-04-17 | | 最終更新日 | 2023-06-14 | | 実験手法 | SOLUTION NMR | | 主引用文献 | Structure of the Mouse Sex Peptide Pheromone ESP1 Reveals a Molecular Basis for Specific Binding to the Class-C G-Protein-Coupled Vomeronasal Receptor
J.Biol.Chem., 2013
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3VXF
 | | X/N Joint refinement of Human alpha-thrombin-Bivalirudin complex PD5 | | 分子名称: | 2-acetamido-2-deoxy-beta-D-glucopyranose, BIVALIRUDIN, Thrombin heavy chain, ... | | 著者 | Yamada, T, Kurihara, K, Masumi, K, Tamada, T, Tomoyori, K, Ohnishi, Y, Tanaka, I, Kuroki, R, Niimura, N. | | 登録日 | 2012-09-12 | | 公開日 | 2013-09-04 | | 最終更新日 | 2020-07-29 | | 実験手法 | NEUTRON DIFFRACTION (1.602 Å), X-RAY DIFFRACTION | | 主引用文献 | Neutron and X-ray crystallographic analysis of the human alpha-thrombin-bivalirudin complex at pD 5.0: protonation states and hydration structure of the enzyme-product complex
Biochim.Biophys.Acta, 1834, 2013
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3VXE
 | | Human alpha-thrombin-Bivalirudin complex at PD5.0 | | 分子名称: | 2-acetamido-2-deoxy-beta-D-glucopyranose, BIVALIRUDIN, Thrombin heavy chain, ... | | 著者 | Yamada, T, Kurihara, K, Masumi, K, Tamada, T, Tomoyori, K, Ohnishi, Y, Tanaka, I, Kuroki, R, Niimura, N. | | 登録日 | 2012-09-12 | | 公開日 | 2013-09-04 | | 最終更新日 | 2023-11-08 | | 実験手法 | X-RAY DIFFRACTION (1.25 Å) | | 主引用文献 | Neutron and X-ray crystallographic analysis of the human alpha-thrombin-bivalirudin complex at pD 5.0: protonation states and hydration structure of the enzyme-product complex
Biochim.Biophys.Acta, 1834, 2013
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2EFD
 | | Ara7/AtVps9a | | 分子名称: | Similarity to vacuolar protein sorting-associated protein VPS9, Small GTP-binding protein-like | | 著者 | Uejima, T, Ihara, K, Wakatsuki, S. | | 登録日 | 2007-02-22 | | 公開日 | 2008-02-26 | | 最終更新日 | 2024-03-13 | | 実験手法 | X-RAY DIFFRACTION (3 Å) | | 主引用文献 | GDP-bound and nucleotide-free intermediates of the guanine nucleotide exchange in the Rab5/Vps9 system
J.Biol.Chem., 285, 2010
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