Loading
PDBj
メニューPDBj@FacebookPDBj@TwitterPDBj@YouTubewwPDB FoundationwwPDB
RCSB PDBPDBeBMRBAdv. SearchSearch help
Search by PDB author
8I8C
DownloadVisualize
BU of 8i8c by Molmil
Plug structure of the Autographa californica multiple nucleopolyhedrovirus (AcMNPV)
分子名称: Occlusion-derived virus envelope/capsid protein, P40
著者Jia, X, Gao, Y, Zhang, Q.
登録日2023-02-03
公開日2023-12-13
実験手法ELECTRON MICROSCOPY (4.93 Å)
主引用文献Architecture of the baculovirus nucleocapsid revealed by cryo-EM.
Nat Commun, 14, 2023
8I8A
DownloadVisualize
BU of 8i8a by Molmil
Cryo-EM structure of the major capsid protein VP39 of Autographa californica multiple nucleopolyhedrovirus (AcMNPV)
分子名称: Major viral capsid protein
著者Jia, X, Zhang, Q.
登録日2023-02-03
公開日2023-12-13
実験手法ELECTRON MICROSCOPY (3.21 Å)
主引用文献Architecture of the baculovirus nucleocapsid revealed by cryo-EM.
Nat Commun, 14, 2023
8I8B
DownloadVisualize
BU of 8i8b by Molmil
Outer shell and inner layer structures of Autographa californica multiple nucleopolyhedrovirus (AcMNPV)
分子名称: 38K, AcOrf-109 peptide, Early 49 Daa protein, ...
著者Jia, X, Gao, Y, Zhang, Q.
登録日2023-02-03
公開日2023-12-13
実験手法ELECTRON MICROSCOPY (4.31 Å)
主引用文献Architecture of the baculovirus nucleocapsid revealed by cryo-EM.
Nat Commun, 14, 2023
7VH8
DownloadVisualize
BU of 7vh8 by Molmil
Crystal structure of SARS-CoV-2 main protease in complex with protease inhibitor PF-07321332
分子名称: (1R,2S,5S)-N-{(1E,2S)-1-imino-3-[(3S)-2-oxopyrrolidin-3-yl]propan-2-yl}-6,6-dimethyl-3-[3-methyl-N-(trifluoroacetyl)-L-valyl]-3-azabicyclo[3.1.0]hexane-2-carboxamide, 3C-like proteinase, DIMETHYL SULFOXIDE
著者Zhao, Y, Zhang, Q, Yang, H, Rao, Z.
登録日2021-09-21
公開日2021-11-03
最終更新日2023-11-29
実験手法X-RAY DIFFRACTION (1.59 Å)
主引用文献Crystal structure of SARS-CoV-2 main protease in complex with protease inhibitor PF-07321332.
Protein Cell, 13, 2022
7C81
DownloadVisualize
BU of 7c81 by Molmil
E30 F-particle in complex with 6C5
分子名称: Heavy chain, Light chain, SPHINGOSINE, ...
著者Wang, K, Zheng, B, Zhang, L, Cui, L, Su, X, Zhang, Q, Guo, Y, Zhu, L, Zhu, F, Rao, Z, Wang, X.
登録日2020-05-28
公開日2020-07-29
最終更新日2020-09-16
実験手法ELECTRON MICROSCOPY (3.1 Å)
主引用文献Serotype specific epitopes identified by neutralizing antibodies underpin immunogenic differences in Enterovirus B.
Nat Commun, 11, 2020
7C80
DownloadVisualize
BU of 7c80 by Molmil
E30 F-particle in complex with 4B10
分子名称: Heavy chain, Light chain, SPHINGOSINE, ...
著者Wang, K, Zheng, B, Zhang, L, Cui, L, Su, X, Zhang, Q, Guo, Y, Zhu, L, Zhu, F, Rao, Z, Wang, X.
登録日2020-05-28
公開日2020-07-29
最終更新日2020-09-16
実験手法ELECTRON MICROSCOPY (3.7 Å)
主引用文献Serotype specific epitopes identified by neutralizing antibodies underpin immunogenic differences in Enterovirus B.
Nat Commun, 11, 2020
7V9Z
DownloadVisualize
BU of 7v9z by Molmil
PaOrn Oligoribonuclease native structure
分子名称: IMIDAZOLE, Oligoribonuclease, SULFATE ION
著者Zhang, J, Zhang, Q, Bartlam, M.
登録日2021-08-27
公開日2022-09-07
最終更新日2023-11-29
実験手法X-RAY DIFFRACTION (1.85 Å)
主引用文献PaOrn Oligoribonuclease native structure
To Be Published
7VA3
DownloadVisualize
BU of 7va3 by Molmil
PaOrn Oligoribonuclease D11A mutant with substrate pGpG complex structure
分子名称: IMIDAZOLE, MANGANESE (II) ION, Oligoribonuclease, ...
著者Zhang, J, Zhang, Q, Bartlam, M.
登録日2021-08-27
公開日2022-09-07
最終更新日2023-11-29
実験手法X-RAY DIFFRACTION (1.8 Å)
主引用文献PaOrn Oligoribonuclease D11A mutant with substrate pGpG complex structure
To Be Published
7VA6
DownloadVisualize
BU of 7va6 by Molmil
PaOrn Oligoribonuclease D11A mutant with RNA GU complex structure
分子名称: IMIDAZOLE, Oligoribonuclease, RNA (5'-R(P*GP*U)-3')
著者Zhang, J, Zhang, Q, Bartlam, M.
登録日2021-08-27
公開日2022-09-07
最終更新日2023-11-29
実験手法X-RAY DIFFRACTION (2.1 Å)
主引用文献PaOrn Oligoribonuclease D11A mutant with RNA GU complex structure
To Be Published
7VA2
DownloadVisualize
BU of 7va2 by Molmil
PaOrn Oligoribonuclease D11A mutant with product GMP complex structure
分子名称: GUANOSINE-5'-MONOPHOSPHATE, IMIDAZOLE, Oligoribonuclease, ...
著者Zhang, J, Zhang, Q, Bartlam, M.
登録日2021-08-27
公開日2022-09-07
最終更新日2023-11-29
実験手法X-RAY DIFFRACTION (2.3 Å)
主引用文献PaOrn Oligoribonuclease D11A mutant with product GMP complex structure
To Be Published
7X78
DownloadVisualize
BU of 7x78 by Molmil
L-fuculose 1-phosphate aldolase
分子名称: L-fuculose phosphate aldolase, MAGNESIUM ION, SULFATE ION
著者Lou, X, Zhang, Q, Bartlam, M.
登録日2022-03-09
公開日2022-04-13
最終更新日2023-11-29
実験手法X-RAY DIFFRACTION (1.85 Å)
主引用文献Structural characterization of an L-fuculose-1-phosphate aldolase from Klebsiella pneumoniae.
Biochem.Biophys.Res.Commun., 607, 2022
7V5H
DownloadVisualize
BU of 7v5h by Molmil
VcOrn native structure with N terminal tag
分子名称: Oligoribonuclease
著者Zhang, J, Zhang, Q, Bartlam, M.
登録日2021-08-17
公開日2021-12-15
最終更新日2023-11-29
実験手法X-RAY DIFFRACTION (1.7 Å)
主引用文献Crystal structure of oligoribonuclease from Vibrio cholerae O1 El Tor with bound peptide.
Acta Crystallogr.,Sect.F, 77, 2021
7D50
DownloadVisualize
BU of 7d50 by Molmil
SpuA mutant - H221N with glutamyl-thioester
分子名称: MAGNESIUM ION, Probable glutamine amidotransferase
著者Chen, Y, Zhang, Q, Bartlam, M.
登録日2020-09-24
公開日2021-10-06
最終更新日2023-11-29
実験手法X-RAY DIFFRACTION (1.77 Å)
主引用文献Structure and mechanism of the gamma-glutamyl-gamma-aminobutyrate hydrolase SpuA from Pseudomonas aeruginosa.
Acta Crystallogr D Struct Biol, 77, 2021
7D54
DownloadVisualize
BU of 7d54 by Molmil
Crstal structure MsGATase with Gln
分子名称: GLUTAMINE, Glutamine amidotransferase class-I
著者Chen, Y, Zhang, Q, Bartlam, M.
登録日2020-09-24
公開日2021-10-06
最終更新日2023-11-29
実験手法X-RAY DIFFRACTION (1.85 Å)
主引用文献Structure and mechanism of the gamma-glutamyl-gamma-aminobutyrate hydrolase SpuA from Pseudomonas aeruginosa.
Acta Crystallogr D Struct Biol, 77, 2021
7D4R
DownloadVisualize
BU of 7d4r by Molmil
SpuA native structure
分子名称: MAGNESIUM ION, Probable glutamine amidotransferase
著者Chen, Y, Zhang, Q, Bartlam, M.
登録日2020-09-24
公開日2021-10-06
最終更新日2023-11-29
実験手法X-RAY DIFFRACTION (1.6 Å)
主引用文献Structure and mechanism of the gamma-glutamyl-gamma-aminobutyrate hydrolase SpuA from Pseudomonas aeruginosa.
Acta Crystallogr D Struct Biol, 77, 2021
7D53
DownloadVisualize
BU of 7d53 by Molmil
SpuA mutant - H221N with Glu
分子名称: GLUTAMIC ACID, MAGNESIUM ION, Probable glutamine amidotransferase
著者Chen, Y, Zhang, Q, Bartlam, M.
登録日2020-09-24
公開日2021-10-06
最終更新日2023-11-29
実験手法X-RAY DIFFRACTION (1.6 Å)
主引用文献Structure and mechanism of the gamma-glutamyl-gamma-aminobutyrate hydrolase SpuA from Pseudomonas aeruginosa.
Acta Crystallogr D Struct Biol, 77, 2021
8GPD
DownloadVisualize
BU of 8gpd by Molmil
Crystal structure of NDM-1 at pH5.5 (Succinate) in complex with hydrolyzed penicillin V
分子名称: (2R,4S)-5,5-dimethyl-2-[(1R)-2-oxidanyl-2-oxidanylidene-1-(2-phenoxyethanoylamino)ethyl]-1,3-thiazolidine-4-carboxylic acid, Metallo beta lactamase NDM-1, POTASSIUM ION, ...
著者Shi, X, Dai, Y, Zhang, Q, Liu, W.
登録日2022-08-26
公開日2023-08-30
最終更新日2024-02-28
実験手法X-RAY DIFFRACTION (1.4 Å)
主引用文献Interplay between the beta-lactam side chain and an active-site mobile loop of NDM-1 in penicillin hydrolysis as a potential target for mechanism-based inhibitor design.
Int.J.Biol.Macromol., 262, 2024
8GPC
DownloadVisualize
BU of 8gpc by Molmil
Crystal structure of NDM-1 at pH5.5 (Succinate) in complex with hydrolyzed ampicillin
分子名称: (2R,4S)-2-[(R)-{[(2R)-2-amino-2-phenylacetyl]amino}(carboxy)methyl]-5,5-dimethyl-1,3-thiazolidine-4-carboxylic acid, Metallo beta lactamase NDM-1, SODIUM ION, ...
著者Shi, X, Dai, Y, Zhang, Q, Liu, W.
登録日2022-08-26
公開日2023-08-30
最終更新日2024-02-28
実験手法X-RAY DIFFRACTION (1.4 Å)
主引用文献Interplay between the beta-lactam side chain and an active-site mobile loop of NDM-1 in penicillin hydrolysis as a potential target for mechanism-based inhibitor design.
Int.J.Biol.Macromol., 262, 2024
8GPE
DownloadVisualize
BU of 8gpe by Molmil
Crystal structure of NDM-1 at pH5.5 (Succinate) in complex with hydrolyzed penicillin G
分子名称: (2R,4S)-2-{(R)-carboxy[(phenylacetyl)amino]methyl}-5,5-dimethyl-1,3-thiazolidine-4-carboxylic acid, Metallo beta lactamase NDM-1, POTASSIUM ION, ...
著者Shi, X, Dai, Y, Zhang, Q, Liu, W.
登録日2022-08-26
公開日2023-08-30
最終更新日2024-02-28
実験手法X-RAY DIFFRACTION (1.4 Å)
主引用文献Interplay between the beta-lactam side chain and an active-site mobile loop of NDM-1 in penicillin hydrolysis as a potential target for mechanism-based inhibitor design.
Int.J.Biol.Macromol., 262, 2024
7U4A
DownloadVisualize
BU of 7u4a by Molmil
Crystal Structure of Zika virus xrRNA1 mutant
分子名称: MAGNESIUM ION, RNA (70-MER)
著者Thompson, R.D, Carbaugh, D.L, Nielsen, J.R, Witt, C, Meganck, R.M, Rangadurai, A, Zhao, B, Bonin, J.P, Nathan, N.T, Marzluff, W.F, Frank, A.T, Lazear, H.M, Zhang, Q.
登録日2022-02-28
公開日2023-09-06
実験手法X-RAY DIFFRACTION (3.15 Å)
主引用文献Dynamic Basis of Xrn1 Resistance in Mosquito-borne Flavivirus RNA
To Be Published
8IJR
DownloadVisualize
BU of 8ijr by Molmil
The cryo-EM structure of human sphingomyelin synthase-related protein in complex with diacylglycerol/phosphoethanolamine
分子名称: (2S)-1-(hexadecanoyloxy)-3-hydroxypropan-2-yl (11Z)-octadec-11-enoate, PHOSPHORIC ACID MONO-(2-AMINO-ETHYL) ESTER, Sphingomyelin synthase-related protein 1
著者Hu, K, Zhang, Q, Chen, Y, Yao, D, Zhou, L, Cao, Y.
登録日2023-02-28
公開日2024-02-28
最終更新日2024-07-03
実験手法ELECTRON MICROSCOPY (3.29 Å)
主引用文献Cryo-EM structure of human sphingomyelin synthase and its mechanistic implications for sphingomyelin synthesis.
Nat.Struct.Mol.Biol., 31, 2024
8IJQ
DownloadVisualize
BU of 8ijq by Molmil
The cryo-EM structure of human sphingomyelin synthase-related protein in complex with ceramide
分子名称: N-((E,2S,3R)-1,3-DIHYDROXYOCTADEC-4-EN-2-YL)PALMITAMIDE, Sphingomyelin synthase-related protein 1
著者Hu, K, Zhang, Q, Chen, Y, Yao, D, Zhou, L, Cao, Y.
登録日2023-02-27
公開日2024-02-28
最終更新日2024-07-03
実験手法ELECTRON MICROSCOPY (3.45 Å)
主引用文献Cryo-EM structure of human sphingomyelin synthase and its mechanistic implications for sphingomyelin synthesis.
Nat.Struct.Mol.Biol., 31, 2024
7XFT
DownloadVisualize
BU of 7xft by Molmil
MucP PDZ2 domain
分子名称: Putative zinc metalloprotease PA3649, SODIUM ION, VALINE
著者Lou, X, Li, S, Zhang, Q, Bartlam, M.
登録日2022-04-02
公開日2023-04-05
最終更新日2023-11-29
実験手法X-RAY DIFFRACTION (1.21 Å)
主引用文献MucP PDZ2 domain
To Be Published
7XFU
DownloadVisualize
BU of 7xfu by Molmil
MucP PDZ2 domain with peptide GPAVLA
分子名称: Putative zinc metalloprotease PA3649,peptide GPAVLA
著者Lou, X, Li, S, Zhang, Q, Bartlam, M.
登録日2022-04-02
公開日2023-04-05
最終更新日2023-11-29
実験手法X-RAY DIFFRACTION (1.53 Å)
主引用文献MucP PDZ2 domain with peptide GPAVLA
To Be Published
7XFS
DownloadVisualize
BU of 7xfs by Molmil
MucP PDZ1 domain
分子名称: Putative zinc metalloprotease PA3649
著者Lou, X, Li, S, Zhang, Q, Bartlam, M.
登録日2022-04-02
公開日2023-04-05
最終更新日2023-11-29
実験手法X-RAY DIFFRACTION (1.06 Å)
主引用文献MucP PDZ1 domain
To Be Published

222415

件を2024-07-10に公開中

PDB statisticsPDBj update infoContact PDBjnumon