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6ZLT
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BU of 6zlt by Molmil
Open-open state of the Bt1762-Bt1763 levan transport system
分子名称: SusC homolog, SusD homolog
著者White, J.B.R, van den Berg, B, Ranson, N.A.
登録日2020-07-01
公開日2020-11-11
最終更新日2021-01-20
実験手法ELECTRON MICROSCOPY (3.9 Å)
主引用文献Insights into SusCD-mediated glycan import by a prominent gut symbiont.
Nat Commun, 12, 2021
8A8C
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BU of 8a8c by Molmil
T5 phage receptor-binding protein pb5 bound to ferrichrome transporter FhuA
分子名称: Ferrichrome outer membrane transporter/phage receptor, Receptor-binding protein pb5, [(2R,3S,4R,5R,6R)-2-[[(2R,4R,5R,6R)-6-[(1R)-1,2-bis(oxidanyl)ethyl]-4-[(2R,4R,5R,6R)-6-[(1R)-1,2-bis(oxidanyl)ethyl]-2-carboxy-4,5-bis(oxidanyl)oxan-2-yl]oxy-2-carboxy-5-oxidanyl-oxan-2-yl]oxymethyl]-5-[[(3R)-3-dodecanoyloxytetradecanoyl]amino]-4-(3-nonanoyloxypropanoyloxy)-6-[[(2R,3S,4R,5R,6R)-3-oxidanyl-4-[(3S)-3-oxidanyltetradecanoyl]oxy-5-[[(3R)-3-oxidanyltridecanoyl]amino]-6-phosphonatooxy-oxan-2-yl]methoxy]oxan-3-yl] phosphate
著者Silale, A, van den Berg, B.
登録日2022-06-22
公開日2022-10-05
最終更新日2022-11-16
実験手法ELECTRON MICROSCOPY (3.1 Å)
主引用文献Structural basis for host recognition and superinfection exclusion by bacteriophage T5.
Proc.Natl.Acad.Sci.USA, 119, 2022
8BLW
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BU of 8blw by Molmil
Vitamin B12 transporter BtuB1 with lipoprotein BtuG1 from B. theta
分子名称: Vitamin B12 transporter BtuB1, YncE family protein, beta-D-galactopyranose
著者Silale, A, Abellon-Ruiz, J, van den Berg, B.
登録日2022-11-10
公開日2023-08-16
実験手法ELECTRON MICROSCOPY (3.22 Å)
主引用文献BtuB TonB-dependent transporters and BtuG surface lipoproteins form stable complexes for vitamin B 12 uptake in gut Bacteroides.
Nat Commun, 14, 2023
8BYS
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BU of 8bys by Molmil
Outer membrane attachment porin OmpM1 from Veillonella parvula, native
分子名称: S-layer homology domain-containing protein
著者Silale, A, van den Berg, B.
登録日2022-12-13
公開日2023-11-08
最終更新日2023-12-27
実験手法ELECTRON MICROSCOPY (3.28 Å)
主引用文献Dual function of OmpM as outer membrane tether and nutrient uptake channel in diderm Firmicutes.
Nat Commun, 14, 2023
8BYT
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BU of 8byt by Molmil
Outer membrane attachment porin OmpM1 from Veillonella parvula, C3 symmetry
分子名称: S-layer homology domain-containing protein
著者Silale, A, van den Berg, B.
登録日2022-12-13
公開日2023-11-08
最終更新日2023-12-27
実験手法ELECTRON MICROSCOPY (2.78 Å)
主引用文献Dual function of OmpM as outer membrane tether and nutrient uptake channel in diderm Firmicutes.
Nat Commun, 14, 2023
8BZ2
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BU of 8bz2 by Molmil
Crystal structure of outer membrane attachment porin OmpM1 SLH domain
分子名称: S-layer homology domain-containing protein, SULFATE ION
著者Silale, A, van den Berg, B.
登録日2022-12-14
公開日2023-11-08
最終更新日2023-12-27
実験手法X-RAY DIFFRACTION (1.7 Å)
主引用文献Dual function of OmpM as outer membrane tether and nutrient uptake channel in diderm Firmicutes.
Nat Commun, 14, 2023
8BYM
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BU of 8bym by Molmil
Outer membrane attachment porin OmpM1 from Veillonella parvula
分子名称: S-layer homology domain-containing protein
著者Silale, A, van den Berg, B.
登録日2022-12-13
公開日2023-11-08
最終更新日2023-12-27
実験手法ELECTRON MICROSCOPY (3.15 Å)
主引用文献Dual function of OmpM as outer membrane tether and nutrient uptake channel in diderm Firmicutes.
Nat Commun, 14, 2023
7NL4
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BU of 7nl4 by Molmil
OsNIP2;1 silicon transporter from rice
分子名称: Aquaporin NIP2-1, CADMIUM ION
著者van den Berg, B.
登録日2021-02-22
公開日2021-11-03
最終更新日2024-01-31
実験手法X-RAY DIFFRACTION (3 Å)
主引用文献Structural Basis for Silicic Acid Uptake by Higher Plants.
J.Mol.Biol., 433, 2021
8A60
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BU of 8a60 by Molmil
Crystal structure of FhuA in complex with the superinfection exclusion lipoprotein Llp
分子名称: Ferrichrome outer membrane transporter/phage receptor, Lytic conversion lipoprotein
著者van den Berg, B.
登録日2022-06-16
公開日2022-10-05
最終更新日2024-01-31
実験手法X-RAY DIFFRACTION (3.37 Å)
主引用文献Structural basis for host recognition and superinfection exclusion by bacteriophage T5.
Proc.Natl.Acad.Sci.USA, 119, 2022
2W27
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BU of 2w27 by Molmil
CRYSTAL STRUCTURE OF THE BACILLUS SUBTILIS YKUI PROTEIN, WITH AN EAL DOMAIN, IN COMPLEX WITH SUBSTRATE C-DI-GMP AND CALCIUM
分子名称: CALCIUM ION, GUANOSINE-5'-MONOPHOSPHATE, YKUI PROTEIN
著者Padavattan, S, AndERSON, W.F, Schirmer, T.
登録日2008-10-24
公開日2009-02-24
最終更新日2023-12-13
実験手法X-RAY DIFFRACTION (2.8 Å)
主引用文献Crystal Structures of Ykui and its Complex with Second Messenger C-Di-Gmp Suggests Catalytic Mechanism of Phosphodiester Bond Cleavage by Eal Domains.
J.Biol.Chem., 284, 2009
8QA6
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BU of 8qa6 by Molmil
MTHFR + SAM inhibited state
分子名称: FLAVIN-ADENINE DINUCLEOTIDE, Methylenetetrahydrofolate reductase (NADPH), S-ADENOSYLMETHIONINE
著者Blomgren, L.K.M, Yue, W.W, Froese, D.S, McCorvie, T.J.
登録日2023-08-22
公開日2023-11-08
最終更新日2024-05-01
実験手法ELECTRON MICROSCOPY (2.91 Å)
主引用文献Dynamic inter-domain transformations mediate the allosteric regulation of human 5, 10-methylenetetrahydrofolate reductase.
Nat Commun, 15, 2024
8QA4
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BU of 8qa4 by Molmil
MTHFR + SAH symmetric dis-inhibited state
分子名称: Methylenetetrahydrofolate reductase (NADPH), S-ADENOSYL-L-HOMOCYSTEINE
著者Blomgren, L.K.M, Yue, W.W, Froese, D.S, McCorvie, T.J.
登録日2023-08-22
公開日2023-11-08
最終更新日2024-05-01
実験手法ELECTRON MICROSCOPY (2.8 Å)
主引用文献Dynamic inter-domain transformations mediate the allosteric regulation of human 5, 10-methylenetetrahydrofolate reductase.
Nat Commun, 15, 2024
8QA5
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BU of 8qa5 by Molmil
MTHFR + SAH asymmetric dis-inhibited state
分子名称: FLAVIN-ADENINE DINUCLEOTIDE, Methylenetetrahydrofolate reductase (NADPH), S-ADENOSYL-L-HOMOCYSTEINE
著者Blomgren, L.K.M, Yue, W.W, Froese, D.S, McCorvie, T.J.
登録日2023-08-22
公開日2023-11-08
最終更新日2024-05-01
実験手法ELECTRON MICROSCOPY (3.14 Å)
主引用文献Dynamic inter-domain transformations mediate the allosteric regulation of human 5, 10-methylenetetrahydrofolate reductase.
Nat Commun, 15, 2024
2YB7
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BU of 2yb7 by Molmil
CBM62 in complex with 6-alpha-D-Galactosyl-mannotriose
分子名称: CALCIUM ION, CARBOHYDRATE BINDING FAMILY 6, GLYCEROL, ...
著者Montanier, C.Y, Correia, M.A.S, Flint, J.E, Zhu, Y, McKee, L.S, Prates, J.A.M, Polizzi, S.J, Coutinho, P.M, Henrissat, B, Fontes, C.M.G.A, Gilbert, H.J.
登録日2011-03-02
公開日2011-08-17
最終更新日2023-12-20
実験手法X-RAY DIFFRACTION (1.7 Å)
主引用文献A Novel, Noncatalytic Carbohydrate-Binding Module Displays Specificity for Galactose-Containing Polysaccharides Through Calcium-Mediated Oligomerization.
J.Biol.Chem., 286, 2011
8RD8
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BU of 8rd8 by Molmil
Cryo-EM structure of P. urativorans 70S ribosome in complex with hibernation factors Balon and RaiA (structure 1).
分子名称: 16S rRNA, 23S rRNA, 30S ribosomal protein S30, ...
著者Helena-Bueno, K, Rybak, M.Y, Gagnon, M.G, Hill, C.H, Melnikov, S.V.
登録日2023-12-07
公開日2024-02-21
最終更新日2024-03-13
実験手法ELECTRON MICROSCOPY (2.62 Å)
主引用文献A new family of bacterial ribosome hibernation factors.
Nature, 626, 2024
8RDW
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BU of 8rdw by Molmil
Cryo-EM structure of P. urativorans 70S ribosome in complex with hibernation factor Balon and EF-Tu(GDP) (structure 3).
分子名称: 16S rRNA, 23S rRNA, 5S rRNA, ...
著者Helena-Bueno, K, Rybak, M.Y, Gagnon, M.G, Hill, C.H, Melnikov, S.V.
登録日2023-12-08
公開日2024-02-21
最終更新日2024-03-13
実験手法ELECTRON MICROSCOPY (2.74 Å)
主引用文献A new family of bacterial ribosome hibernation factors.
Nature, 626, 2024
8S5M
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BU of 8s5m by Molmil
Full-length human cystathionine beta-synthase with C-terminal 6xHis-tag, SAM bound, activated state, helical reconstruction
分子名称: Cystathionine beta-synthase, S-ADENOSYLMETHIONINE
著者McCorvie, T.J, Yue, W.W.
登録日2024-02-23
公開日2024-04-17
実験手法ELECTRON MICROSCOPY (4 Å)
主引用文献Architecture and regulation of filamentous human cystathionine beta-synthase.
Nat Commun, 15, 2024
8S5L
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BU of 8s5l by Molmil
Full-length human cystathionine beta-synthase, basal state, partially degraded tetramer
分子名称: Cystathionine beta-synthase, PROTOPORPHYRIN IX CONTAINING FE, PYRIDOXAL-5'-PHOSPHATE
著者McCorvie, T.J, Yue, W.W.
登録日2024-02-23
公開日2024-04-17
実験手法ELECTRON MICROSCOPY (3.8 Å)
主引用文献Architecture and regulation of filamentous human cystathionine beta-synthase.
Nat Commun, 15, 2024
8S5J
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BU of 8s5j by Molmil
Full-length human cystathionine beta-synthase, basal state, helical reconstruction
分子名称: Cystathionine beta-synthase, PROTOPORPHYRIN IX CONTAINING FE
著者McCorvie, T.J, Yue, W.W.
登録日2024-02-23
公開日2024-04-17
実験手法ELECTRON MICROSCOPY (3.9 Å)
主引用文献Architecture and regulation of filamentous human cystathionine beta-synthase.
Nat Commun, 15, 2024
8S5H
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BU of 8s5h by Molmil
Full-length human cystathionine beta-synthase with C-terminal 6xHis-tag, basal state, helical reconstruction
分子名称: Cystathionine beta-synthase, PROTOPORPHYRIN IX CONTAINING FE
著者McCorvie, T.J, Yue, W.W.
登録日2024-02-23
公開日2024-04-17
実験手法ELECTRON MICROSCOPY (3.7 Å)
主引用文献Architecture and regulation of filamentous human cystathionine beta-synthase.
Nat Commun, 15, 2024
8S5I
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BU of 8s5i by Molmil
Full-length human cystathionine beta-synthase with C-terminal 6xHis-tag, basal state, single particle reconstruction
分子名称: Cystathionine beta-synthase, PROTOPORPHYRIN IX CONTAINING FE
著者McCorvie, T.J, Yue, W.W.
登録日2024-02-23
公開日2024-04-17
実験手法ELECTRON MICROSCOPY (3.1 Å)
主引用文献Architecture and regulation of filamentous human cystathionine beta-synthase.
Nat Commun, 15, 2024
8S5K
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BU of 8s5k by Molmil
Full-length human cystathionine beta-synthase, basal state, single particle reconstruction
分子名称: Cystathionine beta-synthase, PROTOPORPHYRIN IX CONTAINING FE
著者McCorvie, T.J, Yue, W.W.
登録日2024-02-23
公開日2024-04-17
実験手法ELECTRON MICROSCOPY (3.8 Å)
主引用文献Architecture and regulation of filamentous human cystathionine beta-synthase.
Nat Commun, 15, 2024
6FOM
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BU of 6fom by Molmil
Copper transporter OprC
分子名称: (HYDROXYETHYLOXY)TRI(ETHYLOXY)OCTANE, Putative copper transport outer membrane porin OprC
著者Bhamidimarri, S.P, van den Berg, B.
登録日2018-02-07
公開日2019-03-13
最終更新日2024-01-17
実験手法X-RAY DIFFRACTION (2.9 Å)
主引用文献Acquisition of ionic copper by the bacterial outer membrane protein OprC through a novel binding site.
Plos Biol., 19, 2021
6Z34
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BU of 6z34 by Molmil
CymD monoaromatic hydrocarbon channel
分子名称: CymD
著者van den Berg, B.
登録日2020-05-19
公開日2020-11-04
最終更新日2024-01-24
実験手法X-RAY DIFFRACTION (2.27 Å)
主引用文献Uptake of monoaromatic hydrocarbons during biodegradation by FadL channel-mediated lateral diffusion.
Nat Commun, 11, 2020
6Z38
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BU of 6z38 by Molmil
TodX deltaS2S3 mutant monoaromatic hydrocarbon channel
分子名称: TodX
著者van den Berg, B.
登録日2020-05-19
公開日2020-11-04
最終更新日2024-01-24
実験手法X-RAY DIFFRACTION (2.9 Å)
主引用文献Uptake of monoaromatic hydrocarbons during biodegradation by FadL channel-mediated lateral diffusion.
Nat Commun, 11, 2020

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