Search by PDB author

Cryo-EM structure of SV2A in complex with BoNT/A2 Hc
分子名称:	2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-[alpha-L-fucopyranose-(1-6)]2-acetamido-2-deoxy-beta-D-glucopyranose, Botulinum neurotoxin, ...
著者	Yamagata, A.
登録日	2023-06-19
公開日	2024-05-01
最終更新日	2024-05-08
実験手法	ELECTRON MICROSCOPY (3.01 Å)
主引用文献	Structural basis for antiepileptic drugs and botulinum neurotoxin recognition of SV2A. Nat Commun, 15, 2024

8JS8

Cryo-EM structure of SV2A in complex with BoNT/A2 Hc and levetiracetam
分子名称:	(2S)-2-(2-oxidanylidenepyrrolidin-1-yl)butanamide, 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-[alpha-L-fucopyranose-(1-6)]2-acetamido-2-deoxy-beta-D-glucopyranose, ...
著者	Yamagata, A.
登録日	2023-06-19
公開日	2024-05-01
最終更新日	2024-10-16
実験手法	ELECTRON MICROSCOPY (2.88 Å)
主引用文献	Structural basis for antiepileptic drugs and botulinum neurotoxin recognition of SV2A. Nat Commun, 15, 2024

8K77

Cryo-EM structure of SV2A in complex with BoNT/A2 Hc and brivaracetam
分子名称:	(2S)-2-[(4R)-2-oxidanylidene-4-propyl-pyrrolidin-1-yl]butanamide, 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-[alpha-L-fucopyranose-(1-6)]2-acetamido-2-deoxy-beta-D-glucopyranose, ...
著者	Yamagata, A.
登録日	2023-07-26
公開日	2024-05-01
最終更新日	2024-05-08
実験手法	ELECTRON MICROSCOPY (3.11 Å)
主引用文献	Structural basis for antiepileptic drugs and botulinum neurotoxin recognition of SV2A. Nat Commun, 15, 2024

7DZY

Spike protein from SARS-CoV2 with Fab fragment of enhancing antibody 2490
分子名称:	Fab Heavy chain of enhancing antibody 2490, Fab light chain of enhancing antibody 2490, Spike glycoprotein
著者	Liu, Y, Soh, W.T, Li, S, Kishikawa, J, Hirose, M, Kato, T, Standley, D, Okada, M, Arase, H.
登録日	2021-01-26
公開日	2021-06-02
最終更新日	2024-06-05
実験手法	ELECTRON MICROSCOPY (3.6 Å)
主引用文献	An infectivity-enhancing site on the SARS-CoV-2 spike protein targeted by antibodies. Cell, 184, 2021

7DZX

Spike protein from SARS-CoV2 with Fab fragment of enhancing antibody 8D2
分子名称:	Fab Heavy chain of enhancing antibody, Fab light chain of enhancing antibody, Spike glycoprotein
著者	Liu, Y, Soh, W.T, Li, S, Kishikawa, J, Hirose, M, Kato, T, Standley, D, Okada, M, Arase, H.
登録日	2021-01-26
公開日	2021-06-02
最終更新日	2024-03-27
実験手法	ELECTRON MICROSCOPY (3.53 Å)
主引用文献	An infectivity-enhancing site on the SARS-CoV-2 spike protein targeted by antibodies. Cell, 184, 2021

7DZW

Apo spike protein from SARS-CoV2
分子名称:	Spike glycoprotein
著者	Liu, Y, Soh, W.T, Li, S, Kishikawa, J, Hirose, M, Kato, T, Standley, D, Okada, M, Arase, H.
登録日	2021-01-26
公開日	2021-06-02
最終更新日	2024-03-27
実験手法	ELECTRON MICROSCOPY (3.45 Å)
主引用文献	An infectivity-enhancing site on the SARS-CoV-2 spike protein targeted by antibodies. Cell, 184, 2021

5Y0R

Crystal structure of Thermotoga maritima TmcAL (apo, form I)
分子名称:	TmTmcAL(SeMet)
著者	Yamashita, S, Tomita, K.
登録日	2017-07-18
公開日	2018-07-18
最終更新日	2018-12-26
実験手法	X-RAY DIFFRACTION (3.11 Å)
主引用文献	Acetate-dependent tRNA acetylation required for decoding fidelity in protein synthesis. Nat. Chem. Biol., 14, 2018

5Y0N

Crystal structure of Bacillus subtilis TmcAL bound with ATP (SeMet derivative)
分子名称:	ADENOSINE-5'-TRIPHOSPHATE, UPF0348 protein B4417_3650
著者	Yamashita, S, Tomita, K.
登録日	2017-07-18
公開日	2018-07-18
最終更新日	2018-12-26
実験手法	X-RAY DIFFRACTION (2.302 Å)
主引用文献	Acetate-dependent tRNA acetylation required for decoding fidelity in protein synthesis. Nat. Chem. Biol., 14, 2018

5Y0Q

Crystal structure of BsTmcAL bound with AMPCPP
分子名称:	DIPHOSPHOMETHYLPHOSPHONIC ACID ADENOSYL ESTER, UPF0348 protein B4417_3650
著者	Yamashita, S, Tomita, K.
登録日	2017-07-18
公開日	2018-07-18
最終更新日	2023-11-22
実験手法	X-RAY DIFFRACTION (2.1 Å)
主引用文献	Acetate-dependent tRNA acetylation required for decoding fidelity in protein synthesis. Nat. Chem. Biol., 14, 2018

5Y0O

Crystal structure of apo BsTmcAL
分子名称:	UPF0348 protein B4417_3650
著者	Yamashita, S, Tomita, K.
登録日	2017-07-18
公開日	2018-07-18
最終更新日	2023-11-22
実験手法	X-RAY DIFFRACTION (2.3 Å)
主引用文献	Acetate-dependent tRNA acetylation required for decoding fidelity in protein synthesis. Nat. Chem. Biol., 14, 2018

7DMU

Structure of SARS-CoV-2 spike receptor-binding domain complexed with high affinity ACE2 mutant 3N39
分子名称:	2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, Angiotensin-converting enzyme 2, ...
著者	Arimori, T, Takagi, J.
登録日	2020-12-07
公開日	2020-12-23
最終更新日	2024-10-16
実験手法	X-RAY DIFFRACTION (3.2 Å)
主引用文献	Engineered ACE2 receptor therapy overcomes mutational escape of SARS-CoV-2. Nat Commun, 12, 2021

5Y0T

Crystal structure of Thermotoga maritima TmcAL bound with alpha-thio ATP(Form II)
分子名称:	1,2-ETHANEDIOL, ADENOSINE-5'-RP-ALPHA-THIO-TRIPHOSPHATE, PENTAETHYLENE GLYCOL, ...
著者	Yamashita, S, Tomita, K.
登録日	2017-07-18
公開日	2018-07-18
最終更新日	2024-10-16
実験手法	X-RAY DIFFRACTION (1.9 Å)
主引用文献	Acetate-dependent tRNA acetylation required for decoding fidelity in protein synthesis. Nat. Chem. Biol., 14, 2018

5Y0P

Crystal structure of Bacillus subtilis TmcAL bound with alpha-thio ATP
分子名称:	ADENOSINE-5'-RP-ALPHA-THIO-TRIPHOSPHATE, UPF0348 protein B4417_3650
著者	Yamashita, S, Tomita, K.
登録日	2017-07-18
公開日	2018-07-18
最終更新日	2023-11-22
実験手法	X-RAY DIFFRACTION (2.3 Å)
主引用文献	Acetate-dependent tRNA acetylation required for decoding fidelity in protein synthesis. Nat. Chem. Biol., 14, 2018

5Y0S

Crystal structure of apo Thermotoga maritima TmcAL(Form II)
分子名称:	1,2-ETHANEDIOL, Thermotoga maritima TmcAL
著者	Yamashita, S, Tomita, K.
登録日	2017-07-18
公開日	2018-07-18
最終更新日	2023-11-22
実験手法	X-RAY DIFFRACTION (2.103 Å)
主引用文献	Acetate-dependent tRNA acetylation required for decoding fidelity in protein synthesis. Nat. Chem. Biol., 14, 2018

3VSE

Crystal structure of methyltransferase
分子名称:	Putative uncharacterized protein, S-ADENOSYL-L-HOMOCYSTEINE
著者	Kita, S, Tanaka, Y, Yao, M, Tanaka, I.
登録日	2012-04-25
公開日	2013-04-10
最終更新日	2024-03-20
実験手法	X-RAY DIFFRACTION (2.099 Å)
主引用文献	Crystal structure of a putative methyltransferase SAV1081 from Staphylococcus aureus Protein Pept.Lett., 20, 2012

3AMU

Crystal structure of the TiaS-tRNA(Ile2)-AMPCPP-agmatine complex
分子名称:	AGMATINE, DIPHOSPHOMETHYLPHOSPHONIC ACID ADENOSYL ESTER, Putative uncharacterized protein, ...
著者	Numata, T, Osawa, T.
登録日	2010-08-23
公開日	2011-10-19
最終更新日	2023-11-01
実験手法	X-RAY DIFFRACTION (3.1 Å)
主引用文献	Structural basis of tRNA agmatinylation essential for AUA codon decoding Nat.Struct.Mol.Biol., 18, 2011

3AMT

Crystal structure of the TiaS-tRNA(Ile2)-ATP complex
分子名称:	ADENOSINE-5'-TRIPHOSPHATE, Putative uncharacterized protein, RNA (78-MER)
著者	Numata, T, Osawa, T.
登録日	2010-08-23
公開日	2011-10-12
最終更新日	2013-06-19
実験手法	X-RAY DIFFRACTION (2.9 Å)
主引用文献	Structural basis of tRNA agmatinylation essential for AUA codon decoding Nat.Struct.Mol.Biol., 18, 2011

3AU7

Crystal structure of the ZRD-deleted mutant of TiaS in complex with agmatine
分子名称:	AGMATINE, Putative uncharacterized protein
著者	Numata, T, Osawa, T.
登録日	2011-01-31
公開日	2011-10-19
最終更新日	2023-11-01
実験手法	X-RAY DIFFRACTION (2.6 Å)
主引用文献	Structural basis of tRNA agmatinylation essential for AUA codon decoding Nat.Struct.Mol.Biol., 18, 2011

7BYY

Crystal structure of bacterial toxin
分子名称:	Acetyltransferase
著者	Zhang, C, Yashiro, Y, Tomita, K.
登録日	2020-04-25
公開日	2020-06-03
最終更新日	2023-11-29
実験手法	X-RAY DIFFRACTION (2.799 Å)
主引用文献	Substrate specificities of Escherichia coli ItaT that acetylates aminoacyl-tRNAs. Nucleic Acids Res., 48, 2020

7CHD

AtaT complexed with acetyl-methionyl-tRNAfMet
分子名称:	N-acetyltransferase domain-containing protein, RNA (77-MER)
著者	Yashiro, Y, Tomita, K.
登録日	2020-07-05
公開日	2020-11-04
最終更新日	2023-11-29
実験手法	X-RAY DIFFRACTION (3.804 Å)
主引用文献	Mechanism of aminoacyl-tRNA acetylation by an aminoacyl-tRNA acetyltransferase AtaT from enterohemorrhagic E. coli. Nat Commun, 11, 2020

7DR2

Structure of GraFix PSI tetramer from Cyanophora paradoxa
分子名称:	1,2-DIPALMITOYL-PHOSPHATIDYL-GLYCEROLE, 1,2-DISTEAROYL-MONOGALACTOSYL-DIGLYCERIDE, BETA-CAROTENE, ...
著者	Kato, K, Nagao, R, Akita, F, Miyazaki, N, Shen, J.R.
登録日	2020-12-25
公開日	2022-02-16
実験手法	ELECTRON MICROSCOPY (3.8 Å)
主引用文献	Structural insights into an evolutionary turning-point of photosystem I from prokaryotes to eukaryotes Biorxiv, 2022

7DR1

Structure of Wild-type PSI monomer2 from Cyanophora paradoxa
分子名称:	1,2-DIPALMITOYL-PHOSPHATIDYL-GLYCEROLE, 1,2-DISTEAROYL-MONOGALACTOSYL-DIGLYCERIDE, BETA-CAROTENE, ...
著者	Kato, K, Nagao, R, Akita, F, Miyazaki, N, Shen, J.R.
登録日	2020-12-25
公開日	2022-02-16
最終更新日	2024-10-16
実験手法	ELECTRON MICROSCOPY (3.2 Å)
主引用文献	Structural insights into an evolutionary turning-point of photosystem I from prokaryotes to eukaryotes Biorxiv, 2022

7DR0

Structure of Wild-type PSI monomer1 from Cyanophora paradoxa
分子名称:	1,2-DIPALMITOYL-PHOSPHATIDYL-GLYCEROLE, 1,2-DISTEAROYL-MONOGALACTOSYL-DIGLYCERIDE, BETA-CAROTENE, ...
著者	Kato, K, Nagao, R, Akita, F, Miyazaki, N, Shen, J.R.
登録日	2020-12-25
公開日	2022-02-16
実験手法	ELECTRON MICROSCOPY (3.3 Å)
主引用文献	Structural insights into an evolutionary turning-point of photosystem I from prokaryotes to eukaryotes Biorxiv, 2022

2ZB2

Human liver glycogen phosphorylase a complexed with glcose and 5-chloro-N-[4-(1,2-dihydroxyethyl)phenyl]-1H-indole-2-carboxamide
分子名称:	(4S)-2-METHYL-2,4-PENTANEDIOL, 2-(N-MORPHOLINO)-ETHANESULFONIC ACID, 5-chloro-N-{4-[(1R)-1,2-dihydroxyethyl]phenyl}-1H-indole-2-carboxamide, ...
著者	Katayama, N, Onda, K.
登録日	2007-10-15
公開日	2008-09-02
最終更新日	2023-11-01
実験手法	X-RAY DIFFRACTION (2.45 Å)
主引用文献	Synthesis of 5-chloro-N-aryl-1H-indole-2-carboxamide derivatives as inhibitors of human liver glycogen phosphorylase a. Bioorg.Med.Chem., 16, 2008

3A27

Crystal structure of M. jannaschii TYW2 in complex with AdoMet
分子名称:	S-ADENOSYLMETHIONINE, Uncharacterized protein MJ1557
著者	Umitsu, M, Nishimasu, H, Ishitani, R, Nureki, O.
登録日	2009-04-28
公開日	2009-09-15
最終更新日	2023-11-01
実験手法	X-RAY DIFFRACTION (2.005 Å)
主引用文献	Structural basis of AdoMet-dependent aminocarboxypropyl transfer reaction catalyzed by tRNA-wybutosine synthesizing enzyme, TYW2 Proc.Natl.Acad.Sci.USA, 106, 2009

<3 4 5 6 7 8 91011 >

全ヒット件数:	259
表示件数:	25
表示順	関連性が高い順