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2LX1
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BU of 2lx1 by Molmil
Major Conformation of the Internal Loop 5'GAGU/3'UGAG
Descriptor: RNA (5'-R(*GP*AP*CP*GP*AP*GP*UP*GP*UP*CP*A)-3')
Authors:Kennedy, S.D, Turner, D.H.
Deposit date:2012-08-12
Release date:2012-11-21
Last modified:2024-05-15
Method:SOLUTION NMR
Cite:Novel conformation of an RNA structural switch.
Biochemistry, 51, 2012
2O83
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BU of 2o83 by Molmil
The Structure of Tandem GA RNA Pairs When Flanking Pairs are isoG-isoC Pairs
Descriptor: 5'-R(*GP*GP*(IC)P*GP*AP*(IG)P*CP*CP*A)-3'
Authors:Kennedy, S.D, Turner, D.H.
Deposit date:2006-12-11
Release date:2007-07-10
Last modified:2023-12-27
Method:SOLUTION NMR
Cite:Stacking Effects on Local Structure in RNA: Changes in the Structure of Tandem GA Pairs when Flanking GC Pairs are Replaced by isoG-isoC Pairs
J.Phys.Chem.B, 111, 2007
2DD1
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BU of 2dd1 by Molmil
Three consecutive sheared GA pairs in 5'GGUGGAGGCU/3'PCCAAAGCCG
Descriptor: 5'-R(*GP*CP*CP*GP*AP*AP*AP*CP*CP*(P5P))-3', 5'-R(*GP*GP*UP*GP*GP*AP*GP*GP*CP*U)-3'
Authors:Chen, G, Kennedy, S.D, Krugh, T.R, Turner, D.H.
Deposit date:2006-01-19
Release date:2006-06-13
Last modified:2024-05-29
Method:SOLUTION NMR
Cite:An Alternating Sheared AA Pair and Elements of Stability for a Single Sheared Purine-Purine Pair Flanked by Sheared GA Pairs in RNA
Biochemistry, 45, 2006
2DD3
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BU of 2dd3 by Molmil
An alternating sheared AA pair in 5'GGUGAAGGCU/3'PCCGAAGCCG: II. The minor conformation with A6/A5/A16 stack
Descriptor: 5'-R(*GP*CP*CP*GP*AP*AP*GP*CP*CP*(P5P))-3', 5'-R(*GP*GP*UP*GP*AP*AP*GP*GP*CP*U)-3'
Authors:Chen, G, Kennedy, S.D, Krugh, T.R, Turner, D.H.
Deposit date:2006-01-19
Release date:2006-06-13
Last modified:2024-05-29
Method:SOLUTION NMR
Cite:An Alternating Sheared AA Pair and Elements of Stability for a Single Sheared Purine-Purine Pair Flanked by Sheared GA Pairs in RNA
Biochemistry, 45, 2006
2DD2
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BU of 2dd2 by Molmil
An alternating sheared AA pair in 5'GGUGAAGGCU/3'PCCGAAGCCG: I. The major conformation with A6/A15/A16 stack
Descriptor: 5'-R(*GP*CP*CP*GP*AP*AP*GP*CP*CP*(P5P))-3', 5'-R(*GP*GP*UP*GP*AP*AP*GP*GP*CP*U)-3'
Authors:Chen, G, Kennedy, S.D, Krugh, T.R, Turner, D.H.
Deposit date:2006-01-19
Release date:2006-06-13
Last modified:2024-05-29
Method:SOLUTION NMR
Cite:An Alternating Sheared AA Pair and Elements of Stability for a Single Sheared Purine-Purine Pair Flanked by Sheared GA Pairs in RNA
Biochemistry, 45, 2006
1XV0
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BU of 1xv0 by Molmil
Solution NMR structure of RNA internal loop with three consecutive sheared GA pairs in 5'GGUGGAGGCU/3'PCCGAAGCCG
Descriptor: 5'-R(*GP*CP*CP*GP*AP*AP*GP*CP*CP*(P5P)-3', 5'-R(*GP*GP*UP*GP*GP*AP*GP*GP*CP*U)-3'
Authors:Chen, G, Znosko, B.M, Kennedy, S.D, Krugh, T.R, Turner, D.H.
Deposit date:2004-10-26
Release date:2004-11-09
Last modified:2024-05-22
Method:SOLUTION NMR
Cite:Solution Structure of an RNA Internal Loop with Three Consecutive Sheared GA Pairs
Biochemistry, 44, 2005
7RQ5
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BU of 7rq5 by Molmil
Hairpin near 3'-Splice Site of Influenza A Segment 7 Bound to 5-nt Oligonucleotide
Descriptor: RNA (5'-D(*(MU5)P*(MLC)P*(MRC))-R(P*(LG)P*(MU3))-3'), RNA (5'-R(*AP*UP*CP*CP*AP*GP*AP*AP*AP*CP*GP*GP*AP*UP*GP*GP*AP*UP*A)-3')
Authors:Kauffmann, A.D, Kennedy, S.D, Turner, D.H.
Deposit date:2021-08-05
Release date:2022-01-19
Last modified:2024-05-15
Method:SOLUTION NMR
Cite:Nuclear magnetic resonance reveals a two hairpin equilibrium near the 3'-splice site of influenza A segment 7 mRNA that can be shifted by oligonucleotides.
Rna, 28, 2022
6N8H
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BU of 6n8h by Molmil
RNA Duplex containing the internal loop 5'-GCAU/3'-UACG
Descriptor: RNA (5'-R(*CP*GP*GP*GP*CP*AP*UP*CP*CP*G)-3')
Authors:Berger, K.D, Kennedy, S.D, Turner, D.H.
Deposit date:2018-11-29
Release date:2019-02-13
Last modified:2024-05-01
Method:SOLUTION NMR
Cite:Nuclear Magnetic Resonance Reveals That GU Base Pairs Flanking Internal Loops Can Adopt Diverse Structures.
Biochemistry, 58, 2019
6N8F
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BU of 6n8f by Molmil
RNA Duplex containing the internal loop 5'-GCUU/3'-UUCG
Descriptor: RNA (5'-R(*CP*GP*CP*AP*GP*CP*UP*UP*AP*CP*GP*C)-3'), RNA (5'-R(*GP*CP*GP*UP*GP*CP*UP*UP*UP*GP*CP*G)-3')
Authors:Berger, K.D, Kennedy, S.D, Turner, D.H.
Deposit date:2018-11-29
Release date:2019-02-13
Last modified:2024-05-01
Method:SOLUTION NMR
Cite:Nuclear Magnetic Resonance Reveals That GU Base Pairs Flanking Internal Loops Can Adopt Diverse Structures.
Biochemistry, 58, 2019
6N8I
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BU of 6n8i by Molmil
RNA Duplex containing the internal loop 5'-UUCG/3'-GCUU
Descriptor: RNA (5'-R(*CP*GP*CP*AP*UP*UP*CP*GP*AP*CP*GP*C)-3'), RNA (5'-R(*GP*CP*GP*UP*UP*UP*CP*GP*UP*GP*CP*G)-3')
Authors:Berger, K.D, Kennedy, S.D, Turner, D.H.
Deposit date:2018-11-29
Release date:2019-02-13
Last modified:2024-05-01
Method:SOLUTION NMR
Cite:Nuclear Magnetic Resonance Reveals That GU Base Pairs Flanking Internal Loops Can Adopt Diverse Structures.
Biochemistry, 58, 2019
1TUT
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BU of 1tut by Molmil
J4/5 Loop from the Candida albicans and Candida dubliniensis Group I Introns
Descriptor: 5'-R(*GP*AP*GP*GP*AP*AP*GP*GP*CP*GP*A)-3', 5'-R(*UP*CP*GP*UP*UP*AP*AP*UP*CP*UP*C)-3'
Authors:Znosko, B.M, Kennedy, S.D, Wille, P.C, Krugh, T.R, Turner, D.H.
Deposit date:2004-06-25
Release date:2004-12-28
Last modified:2024-05-22
Method:SOLUTION NMR
Cite:Structural Features and Thermodynamics of the J4/5 Loop from the Candida albicans and Candida dubliniensis Group I Introns.
Biochemistry, 43, 2004
5V2R
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BU of 5v2r by Molmil
Structure of a GA Rich 8x8 Nucleotide RNA Internal Loop
Descriptor: RNA (5'-R(*CP*CP*AP*GP*AP*AP*AP*CP*GP*GP*AP*UP*GP*GP*A)-3')
Authors:Kauffmann, A.D, Kennedy, S.D, Turner, D.H.
Deposit date:2017-03-06
Release date:2017-07-26
Last modified:2024-05-01
Method:SOLUTION NMR
Cite:Nuclear Magnetic Resonance Structure of an 8 8 Nucleotide RNA Internal Loop Flanked on Each Side by Three Watson-Crick Pairs and Comparison to Three-Dimensional Predictions.
Biochemistry, 56, 2017
2KY1
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BU of 2ky1 by Molmil
The Structure of RNA Internal Loops with Tandem AG Pairs: 5'UAGA/3'AGAU
Descriptor: 5'-R(*GP*AP*CP*UP*AP*GP*AP*GP*UP*CP*A)-3'
Authors:Hammond, N.B, Kennedy, S.D, Turner, D.H.
Deposit date:2010-05-13
Release date:2010-06-02
Last modified:2024-05-22
Method:SOLUTION NMR
Cite:RNA internal loops with tandem AG pairs: the structure of the 5'GAGU/3'UGAG loop can be dramatically different from others, including 5'AAGU/3'UGAA.
Biochemistry, 49, 2010
2KY2
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BU of 2ky2 by Molmil
The Structure of RNA Internal Loops with Tandem AG Pairs: 5'UAGG/3'GGAU
Descriptor: 5'-R(*GP*GP*UP*AP*GP*GP*CP*CP*A)-3'
Authors:Hammond, N.B, Kennedy, S.D, Turner, D.H.
Deposit date:2010-05-13
Release date:2010-06-02
Last modified:2024-05-22
Method:SOLUTION NMR
Cite:RNA internal loops with tandem AG pairs: the structure of the 5'GAGU/3'UGAG loop can be dramatically different from others, including 5'AAGU/3'UGAA.
Biochemistry, 49, 2010
2KXZ
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BU of 2kxz by Molmil
The Structure of RNA Internal Loops with Tandem AG Pairs: 5'AAGU/3'UGAA
Descriptor: 5'-R(*GP*AP*CP*AP*AP*GP*UP*GP*UP*CP*A)-3'
Authors:Hammond, N.B, Kennedy, S.D, Turner, D.H.
Deposit date:2010-05-13
Release date:2010-06-02
Last modified:2024-05-22
Method:SOLUTION NMR
Cite:RNA internal loops with tandem AG pairs: the structure of the 5'GAGU/3'UGAG loop can be dramatically different from others, including 5'AAGU/3'UGAA.
Biochemistry, 49, 2010
2MXK
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BU of 2mxk by Molmil
Structural features of a 3' splice site influenza A: 19-nt duplex
Descriptor: RNA (5'-R(*GP*CP*AP*GP*GP*CP*CP*CP*A)-3'), RNA (5'-R(*UP*GP*GP*GP*AP*GP*UP*GP*CP*A)-3')
Authors:Turner, D.H, Kennedy, S.D, Chen, J.L.
Deposit date:2015-01-06
Release date:2015-05-06
Last modified:2024-05-01
Method:SOLUTION NMR
Cite:Structural features of a 3' splice site in influenza a.
Biochemistry, 54, 2015
2MXJ
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BU of 2mxj by Molmil
Structural features of a 3' splice site influenza A: 11-nt hairpin
Descriptor: RNA_(11-MER)
Authors:Turner, D.H, Kennedy, S.D, Chen, J.L.
Deposit date:2015-01-06
Release date:2015-05-06
Last modified:2024-05-01
Method:SOLUTION NMR
Cite:Structural features of a 3' splice site in influenza a.
Biochemistry, 54, 2015
2KY0
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BU of 2ky0 by Molmil
The Structure of RNA Internal Loops with Tandem AG Pairs: 5'GAGC/3'CGAG
Descriptor: 5'-R(*GP*AP*CP*GP*AP*GP*CP*GP*UP*CP*A)-3'
Authors:Hammond, N.B, Kennedy, S.D, Turner, D.H.
Deposit date:2010-05-13
Release date:2010-06-02
Last modified:2024-05-22
Method:SOLUTION NMR
Cite:RNA internal loops with tandem AG pairs: the structure of the 5'GAGU/3'UGAG loop can be dramatically different from others, including 5'AAGU/3'UGAA.
Biochemistry, 49, 2010
2KQ6
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BU of 2kq6 by Molmil
The structure of the EF-hand domain of polycystin-2 suggests a mechanism for Ca2+-dependent regulation of polycystin-2 channel activity
Descriptor: Polycystin-2
Authors:Petri, E.T, Celic, A, Kennedy, S.D, Ehrlich, B.E, Boggon, T.J, Hodsdon, M.E.
Deposit date:2009-10-28
Release date:2010-05-12
Last modified:2024-05-08
Method:SOLUTION NMR
Cite:Structure of the EF-hand domain of polycystin-2 suggests a mechanism for Ca2+-dependent regulation of polycystin-2 channel activity.
Proc.Natl.Acad.Sci.USA, 107, 2010
2MXL
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BU of 2mxl by Molmil
Structural features of a 3' splice site in influenza A: 39-nt hairpin
Descriptor: RNA (39-MER)
Authors:Turner, D.H, Kennedy, S.D, Chen, J.L.
Deposit date:2015-01-06
Release date:2015-05-06
Last modified:2024-05-01
Method:SOLUTION NMR
Cite:Structural features of a 3' splice site in influenza a.
Biochemistry, 54, 2015
2L8F
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BU of 2l8f by Molmil
Structure of a 4X4 Nucleotide RNA Internal Loop from an R2 Retrotransposon
Descriptor: RNA (5'-R(*CP*GP*GP*AP*GP*GP*AP*CP*AP*CP*U)-3'), RNA (5'-R(*GP*UP*GP*AP*AP*GP*CP*CP*CP*GP*U)-3')
Authors:Lerman, Y, Kennedy, S.D, Turner, D.H.
Deposit date:2011-01-11
Release date:2011-08-31
Last modified:2024-05-15
Method:SOLUTION NMR
Cite:NMR structure of a 4 x 4 nucleotide RNA internal loop from an R2 retrotransposon: Identification of a three purine-purine sheared pair motif and comparison to MC-SYM predictions.
Rna, 17, 2011
4FXX
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BU of 4fxx by Molmil
Structure of SF1 coiled-coil domain
Descriptor: IMIDAZOLE, MALONATE ION, Splicing factor 1
Authors:Gupta, A, Bauer, W.J, Wang, W, Kielkopf, C.L.
Deposit date:2012-07-03
Release date:2013-01-16
Last modified:2024-02-28
Method:X-RAY DIFFRACTION (2.4801 Å)
Cite:Structure of Phosphorylated SF1 Bound to U2AF(65) in an Essential Splicing Factor Complex.
Structure, 21, 2013
4FXW
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BU of 4fxw by Molmil
Structure of phosphorylated SF1 complex with U2AF65-UHM domain
Descriptor: SULFATE ION, Splicing factor 1, Splicing factor U2AF 65 kDa subunit
Authors:Wang, W, Bauer, W.J, Wedekind, J.E, Kielkopf, C.L.
Deposit date:2012-07-03
Release date:2013-01-16
Last modified:2024-11-06
Method:X-RAY DIFFRACTION (2.29 Å)
Cite:Structure of Phosphorylated SF1 Bound to U2AF(65) in an Essential Splicing Factor Complex.
Structure, 21, 2013
2H49
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BU of 2h49 by Molmil
The NMR Structure of an Internal Loop from 23S Ribosomal RNA of Deinococcus radiodurans Differs from the Structure in the Crystal of the Ribosomal Subunit
Descriptor: 5'-R(*GP*GP*CP*UP*AP*AP*GP*AP*C)-3', 5'-R(*GP*UP*CP*GP*AP*AP*GP*CP*C)-3'
Authors:Shankar, N.
Deposit date:2006-05-23
Release date:2006-11-21
Last modified:2024-05-29
Method:SOLUTION NMR
Cite:The NMR structure of an internal loop from 23S ribosomal RNA differs from its structure in crystals of 50s ribosomal subunits.
Biochemistry, 45, 2006
2IRO
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BU of 2iro by Molmil
The NMR Structures of (rGCUGAGGCU)2 and (rGCGGAUGCU)2
Descriptor: 5'-R(P*GP*CP*GP*GP*AP*UP*GP*CP*U)-3'
Authors:Tolbert, B.S.
Deposit date:2006-10-16
Release date:2007-02-20
Last modified:2024-05-29
Method:SOLUTION NMR
Cite:NMR Structures of (rGCUGAGGCU)(2) and (rGCGGAUGCU)(2): Probing the Structural Features That Shape the Thermodynamic Stability of GA Pairs(,).
Biochemistry, 46, 2007

 

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