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5GUX
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BU of 5gux by Molmil
Cytochrome c-dependent nitric oxide reductase (cNOR) from Pseudomonas aeruginosa in complex with xenon
Descriptor: Antibody fab fragment heavy chain, Antibody fab fragment light chain, CALCIUM ION, ...
Authors:Ishii, S, Terasaka, E, Sugimoto, H, Shiro, Y, Tosha, T.
Deposit date:2016-08-31
Release date:2017-08-16
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (3.3 Å)
Cite:Dynamics of nitric oxide controlled by protein complex in bacterial system.
Proc. Natl. Acad. Sci. U.S.A., 114, 2017
5GUW
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BU of 5guw by Molmil
Complex of Cytochrome cd1 Nitrite Reductase and Nitric Oxide Reductase in Denitrification of Pseudomonas aeruginosa
Descriptor: CALCIUM ION, CHLORIDE ION, FE (III) ION, ...
Authors:Terasaka, E, Sugimoto, H, Shiro, Y, Tosha, T.
Deposit date:2016-08-31
Release date:2017-08-16
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (3.2 Å)
Cite:Dynamics of nitric oxide controlled by protein complex in bacterial system
Proc. Natl. Acad. Sci. U.S.A., 114, 2017
3W9F
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BU of 3w9f by Molmil
Crystal structure of the ankyrin repeat domain of chicken TRPV4 in complex with IP3
Descriptor: D-MYO-INOSITOL-1,4,5-TRIPHOSPHATE, Vanilloid receptor-related osmotically activated channel protein
Authors:Itoh, Y, Hamada-nakahara, S, Suetsugu, S.
Deposit date:2013-04-04
Release date:2014-04-09
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:TRPV4 channel activity is modulated by direct interaction of the ankyrin domain to PI(4,5)P2
Nat Commun, 5, 2014
3W9G
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BU of 3w9g by Molmil
Crystal structure of the ankyrin repeat domain of chicken TRPV4
Descriptor: Vanilloid receptor-related osmotically activated channel protein
Authors:Itoh, Y, Hamada-nakahara, S, Suetsugu, S.
Deposit date:2013-04-04
Release date:2014-04-09
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (2 Å)
Cite:TRPV4 channel activity is modulated by direct interaction of the ankyrin domain to PI(4,5)P2
Nat Commun, 5, 2014
3AQO
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BU of 3aqo by Molmil
Structure and function of a membrane component SecDF that enhances protein export
Descriptor: Probable SecDF protein-export membrane protein
Authors:Echizen, Y, Tsukazaki, T, Ishitani, R, Nureki, O.
Deposit date:2010-11-16
Release date:2011-05-18
Last modified:2024-03-13
Method:X-RAY DIFFRACTION (2.6 Å)
Cite:Structure and function of a membrane component SecDF that enhances protein export.
Nature, 474, 2011
1V49
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BU of 1v49 by Molmil
Solution structure of microtubule-associated protein light chain-3
Descriptor: Microtubule-associated proteins 1A/1B light chain 3B
Authors:Kouno, T, Mizuguchi, M, Tanida, I, Ueno, T, Kominami, E, Kawano, K.
Deposit date:2003-11-11
Release date:2004-12-28
Last modified:2023-12-27
Method:SOLUTION NMR
Cite:Solution structure of microtubule-associated protein light chain 3 and identification of its functional subdomains.
J.Biol.Chem., 280, 2005
1VFL
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BU of 1vfl by Molmil
Adenosine deaminase
Descriptor: Adenosine deaminase, ZINC ION
Authors:Kinoshita, T.
Deposit date:2004-04-16
Release date:2005-08-16
Last modified:2023-12-27
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Structural Basis of Compound Recognition by Adenosine Deaminase
Biochemistry, 44, 2005
1WXY
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BU of 1wxy by Molmil
Crystal structure of adenosine deaminase ligated with a potent inhibitor
Descriptor: Adenosine deaminase, N-[4,5-BIS(4-HYDROXYPHENYL)-1,3-THIAZOL-2-YL]HEXANAMIDE, ZINC ION
Authors:Kinoshita, T.
Deposit date:2005-02-02
Release date:2005-08-16
Last modified:2024-03-13
Method:X-RAY DIFFRACTION (2.5 Å)
Cite:Structural Basis of Compound Recognition by Adenosine Deaminase
Biochemistry, 44, 2005
2E2S
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BU of 2e2s by Molmil
Solution structure of agelenin, an insecticidal peptide from the venom of Agelena opulenta
Descriptor: Agelenin
Authors:Yamaji, N.
Deposit date:2006-11-17
Release date:2007-08-07
Last modified:2022-03-09
Method:SOLUTION NMR
Cite:Solution structure of agelenin, an insecticidal peptide isolated from the spider Agelena opulenta, and its structural similarities to insect-specific calcium channel inhibitors
Febs Lett., 581, 2007
2Z83
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BU of 2z83 by Molmil
Crystal Structure of Catalytic Domain of Japanese Encephalitis Virus NS3 Helicase/Nucleoside Triphosphatase at a Resolution 1.8
Descriptor: Helicase/Nucleoside Triphosphatase
Authors:Yamashita, T.
Deposit date:2007-08-30
Release date:2008-03-04
Last modified:2023-11-01
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Crystal Structure of Catalytic Domain of Japanese Encephalitis Virus NS3 Helicase/Nucleoside Triphosphatase at a Resolution 1.8
To be Published
2ZYE
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BU of 2zye by Molmil
Structure of HIV-1 Protease in Complex with Potent Inhibitor KNI-272 Determined by Neutron Crystallography
Descriptor: (4R)-N-tert-butyl-3-[(2S,3S)-2-hydroxy-3-({N-[(isoquinolin-5-yloxy)acetyl]-S-methyl-L-cysteinyl}amino)-4-phenylbutanoyl]-1,3-thiazolidine-4-carboxamide, protease
Authors:Adachi, M, Ohhara, T, Tamada, T, Okazaki, N, Kuroki, R.
Deposit date:2009-01-20
Release date:2009-03-24
Last modified:2024-05-29
Method:NEUTRON DIFFRACTION (1.9 Å)
Cite:Structure of HIV-1 protease in complex with potent inhibitor KNI-272 determined by high-resolution X-ray and neutron crystallography.
Proc.Natl.Acad.Sci.USA, 2009
2E2F
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BU of 2e2f by Molmil
Solution structure of DSP
Descriptor: Diapausin
Authors:Kouno, T, Mizuguchi, M, Suzuki, K, Kawano, K.
Deposit date:2006-11-12
Release date:2007-11-13
Last modified:2024-05-15
Method:SOLUTION NMR
Cite:The structure of a novel insect peptide explains its Ca2+ channel blocking and antifungal activities
Biochemistry, 46, 2007
3A71
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BU of 3a71 by Molmil
High resolution structure of Penicillium chrysogenum alpha-L-arabinanase
Descriptor: (4S)-2-METHYL-2,4-PENTANEDIOL, ACETATE ION, Exo-arabinanase
Authors:Sogabe, Y.
Deposit date:2009-09-11
Release date:2010-09-15
Last modified:2024-03-13
Method:X-RAY DIFFRACTION (1.14 Å)
Cite:High-resolution structure of exo-arabinanase from Penicillium chrysogenum
Acta Crystallogr.,Sect.D, 67, 2011
3A72
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BU of 3a72 by Molmil
High resolution structure of Penicillium chrysogenum alpha-L-arabinanase complexed with arabinobiose
Descriptor: Exo-arabinanase, alpha-L-arabinofuranose-(1-5)-alpha-L-arabinofuranose
Authors:Sogabe, Y.
Deposit date:2009-09-11
Release date:2010-09-15
Last modified:2023-11-01
Method:X-RAY DIFFRACTION (1.04 Å)
Cite:High-resolution structure of exo-arabinanase from Penicillium chrysogenum
Acta Crystallogr.,Sect.D, 67, 2011
5B6F
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BU of 5b6f by Molmil
Crystal structure of the Fab fragment of an anti-Leukotriene C4 monoclonal antibody complexed with LTC4
Descriptor: (5~{S},6~{R},7~{E},9~{E},11~{Z},14~{Z})-6-[(2~{R})-2-[[(4~{S})-4-azanyl-5-oxidanyl-5-oxidanylidene-pentanoyl]amino]-3-(2-hydroxy-2-oxoethylamino)-3-oxidanylidene-propyl]sulfanyl-5-oxidanyl-icosa-7,9,11,14-tetraenoic acid, 2-(N-MORPHOLINO)-ETHANESULFONIC ACID, SULFATE ION, ...
Authors:Sugahara, M, Ago, H, Saino, H, Miyano, M.
Deposit date:2016-05-27
Release date:2017-05-31
Last modified:2019-07-24
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:Crystal structure of the Fab fragment of an anti-Leukotriene C4 monoclonal antibody complexed with LTC4
To Be Published
6L93
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BU of 6l93 by Molmil
X-ray structure of the ligand-free human TRPV1 ankyrin repeat domain
Descriptor: Transient receptor potential cation channel subfamily V member 1
Authors:Tanaka, M, Hayakawa, K, Unno, M.
Deposit date:2019-11-08
Release date:2020-03-18
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (4.47 Å)
Cite:Structure determination of the human TRPV1 ankyrin-repeat domain under nonreducing conditions.
Acta Crystallogr.,Sect.F, 76, 2020
2RDV
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BU of 2rdv by Molmil
RUBREDOXIN FROM DESULFOVIBRIO VULGARIS MIYAZAKI F, MONOCLINIC CRYSTAL FORM
Descriptor: FE (III) ION, RUBREDOXIN
Authors:Higuchi, Y, Yasuoka, N.
Deposit date:1998-10-07
Release date:1999-05-18
Last modified:2024-05-22
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:Structure determination of rubredoxin from Desulfovibrio vulgaris Miyazaki F in two crystal forms.
Acta Crystallogr.,Sect.D, 55, 1999
7YV1
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BU of 7yv1 by Molmil
Human K-Ras G12D (GDP-bound) in complex with cyclic peptide inhibitor LUNA18 and KA30L Fab
Descriptor: GUANOSINE-5'-DIPHOSPHATE, Isoform 2B of GTPase KRas, KA30L Fab H-chain, ...
Authors:Irie, M, Fukami, T.A, Matsuo, A, Saka, K, Nishimura, M, Saito, H, Torizawa, T, Tanada, M, Ohta, A.
Deposit date:2022-08-18
Release date:2023-07-26
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (1.454 Å)
Cite:Validation of a New Methodology to Create Oral Drugs beyond the Rule of 5 for Intracellular Tough Targets.
J.Am.Chem.Soc., 145, 2023
7YUZ
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BU of 7yuz by Molmil
Human K-Ras G12D (GDP-bound) in complex with cyclic peptide inhibitor AP8784
Descriptor: AP8784, GUANOSINE-5'-DIPHOSPHATE, IODIDE ION, ...
Authors:Irie, M, Fukami, T.A, Tanada, M, Ohta, A, Torizawa, T.
Deposit date:2022-08-18
Release date:2023-07-26
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (1.878 Å)
Cite:Validation of a New Methodology to Create Oral Drugs beyond the Rule of 5 for Intracellular Tough Targets.
J.Am.Chem.Soc., 145, 2023
5WSF
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BU of 5wsf by Molmil
Crystal structure of a cupin protein (tm1459) in osmium (Os)-substituted form II
Descriptor: OSMIUM ION, Uncharacterized protein tm1459
Authors:Fujieda, N, Nakano, T, Taniguchi, Y, Ichihashi, H, Nishikawa, Y, Kurisu, G, Itoh, S.
Deposit date:2016-12-06
Release date:2017-05-31
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (1.11 Å)
Cite:A Well-Defined Osmium-Cupin Complex: Hyperstable Artificial Osmium Peroxygenase
J. Am. Chem. Soc., 2017
6E9N
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BU of 6e9n by Molmil
E. coli D-galactonate:proton symporter in the inward open form
Descriptor: D-galactonate transport, D-gluconic acid, nonyl beta-D-glucopyranoside
Authors:Leano, J.B, Edwards, R.H, Stroud, R.M.
Deposit date:2018-08-01
Release date:2019-05-22
Last modified:2023-10-11
Method:X-RAY DIFFRACTION (2.915 Å)
Cite:Structures suggest a mechanism for energy coupling by a family of organic anion transporters.
Plos Biol., 17, 2019
1MDV
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BU of 1mdv by Molmil
KEY ROLE OF PHENYLALANINE 20 IN CYTOCHROME C3: STRUCTURE, STABILITY AND FUNCTION STUDIES
Descriptor: CYTOCHROME C3, PROTOPORPHYRIN IX CONTAINING FE
Authors:Dolla, A, Arnoux, P, Protasevich, I, Lobachov, V, Brugna, M, Guidici-Orticoni, M.T, Haser, R, Czjzek, M, Makarov, A, Brushi, M.
Deposit date:1998-09-08
Release date:1999-05-04
Last modified:2023-08-09
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:Key role of phenylalanine 20 in cytochrome c3: structure, stability, and function studies.
Biochemistry, 38, 1999
1FLM
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BU of 1flm by Molmil
DIMER OF FMN-BINDING PROTEIN FROM DESULFOVIBRIO VULGARIS (MIYAZAKI F)
Descriptor: FLAVIN MONONUCLEOTIDE, PROTEIN (FMN-BINDING PROTEIN)
Authors:Suto, K, Kawagoe, K, Shibata, N, Morimoto, K, Higuchi, Y, Kitamura, M, Nakaya, T, Yasuoka, N.
Deposit date:1999-03-10
Release date:2000-03-06
Last modified:2023-12-27
Method:X-RAY DIFFRACTION (1.3 Å)
Cite:How do the x-ray structure and the NMR structure of FMN-binding protein differ?
Acta Crystallogr.,Sect.D, 56, 2000
1GCY
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BU of 1gcy by Molmil
HIGH RESOLUTION CRYSTAL STRUCTURE OF MALTOTETRAOSE-FORMING EXO-AMYLASE
Descriptor: CALCIUM ION, GLUCAN 1,4-ALPHA-MALTOTETRAHYDROLASE
Authors:Mezaki, Y, Katsuya, Y, Kubota, M, Matsuura, Y.
Deposit date:2000-08-14
Release date:2000-08-30
Last modified:2023-10-25
Method:X-RAY DIFFRACTION (1.6 Å)
Cite:Crystallization and structural analysis of intact maltotetraose-forming exo-amylase from Pseudomonas stutzeri.
Biosci.Biotechnol.Biochem., 65, 2001
1QPK
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BU of 1qpk by Molmil
MUTANT (D193G) MALTOTETRAOSE-FORMING EXO-AMYLASE IN COMPLEX WITH MALTOTETRAOSE
Descriptor: CALCIUM ION, PROTEIN (MALTOTETRAOSE-FORMING AMYLASE), alpha-D-glucopyranose-(1-4)-alpha-D-glucopyranose-(1-4)-alpha-D-glucopyranose-(1-4)-alpha-D-glucopyranose
Authors:Yoshioka, Y, Hasegawa, K, Matsuura, Y, Katsube, Y, Kubota, M.
Deposit date:1999-05-26
Release date:1999-11-17
Last modified:2021-11-03
Method:X-RAY DIFFRACTION (2 Å)
Cite:Roles of catalytic residues in alpha-amylases as evidenced by the structures of the product-complexed mutants of a maltotetraose-forming amylase.
Protein Eng., 12, 1999

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