Loading
PDBj
MenuPDBj@FacebookPDBj@TwitterPDBj@YouTubewwPDB FoundationwwPDB
RCSB PDBPDBeBMRBAdv. SearchSearch help
Search by PDB author
3GAK
DownloadVisualize
BU of 3gak by Molmil
Structure of Giardia fructose-1,6-biphosphate aldolase
Descriptor: Fructose-bisphosphate aldolase, SULFATE ION, ZINC ION
Authors:Galkin, A, Herzberg, O.
Deposit date:2009-02-17
Release date:2009-03-31
Last modified:2023-09-06
Method:X-RAY DIFFRACTION (2.9 Å)
Cite:Structural insights into the substrate binding and stereoselectivity of giardia fructose-1,6-bisphosphate aldolase.
Biochemistry, 48, 2009
3FA3
DownloadVisualize
BU of 3fa3 by Molmil
Crystal structure of 2,3-dimethylmalate lyase, a PEP mutase/isocitrate lyase superfamily member, trigonal crystal form
Descriptor: 2,2-difluoro-3,3-dihydroxybutanedioic acid, 2,3-dimethylmalate lyase, GLYCEROL, ...
Authors:Narayanan, B.C, Herzberg, O.
Deposit date:2008-11-14
Release date:2009-01-27
Last modified:2023-12-27
Method:X-RAY DIFFRACTION (2.6 Å)
Cite:Structure and function of 2,3-dimethylmalate lyase, a PEP mutase/isocitrate lyase superfamily member.
J.Mol.Biol., 386, 2009
1PYM
DownloadVisualize
BU of 1pym by Molmil
PHOSPHOENOLPYRUVATE MUTASE FROM MOLLUSK IN WITH BOUND MG2-OXALATE
Descriptor: MAGNESIUM ION, OXALATE ION, PROTEIN (PHOSPHOENOLPYRUVATE MUTASE)
Authors:Huang, K, Li, Z, Herzberg, O.
Deposit date:1999-02-25
Release date:1999-07-21
Last modified:2023-12-27
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Helix swapping between two alpha/beta barrels: crystal structure of phosphoenolpyruvate mutase with bound Mg(2+)-oxalate.
Structure Fold.Des., 7, 1999
1NU0
DownloadVisualize
BU of 1nu0 by Molmil
Structure of the double mutant (L6M; F134M, SeMet form) of yqgF from Escherichia coli, a hypothetical protein
Descriptor: Hypothetical protein yqgF, SULFATE ION
Authors:Galkin, A, Sarikaya, E, Krajewski, W, Howard, A, Herzberg, O, Structure 2 Function Project (S2F)
Deposit date:2003-01-30
Release date:2004-03-02
Last modified:2021-10-27
Method:X-RAY DIFFRACTION (1.6 Å)
Cite:Structure of yqgF from Escherichia coli, a hypothetical protein
To be Published
3L2D
DownloadVisualize
BU of 3l2d by Molmil
Glycocyamine kinase, beta-beta homodimer from marine worm Namalycastis sp.
Descriptor: Glycocyamine kinase beta chain
Authors:Lim, K, Pullalarevu, S, Herzberg, O.
Deposit date:2009-12-15
Release date:2010-03-02
Last modified:2023-09-06
Method:X-RAY DIFFRACTION (2.4 Å)
Cite:Structural basis for the mechanism and substrate specificity of glycocyamine kinase, a phosphagen kinase family member.
Biochemistry, 49, 2010
3GRF
DownloadVisualize
BU of 3grf by Molmil
X-ray Structure of Ornithine Transcarbamoylase from Giardia lamblia
Descriptor: NICKEL (II) ION, Ornithine carbamoyltransferase
Authors:Galkin, A, Herzberg, O.
Deposit date:2009-03-25
Release date:2009-06-30
Last modified:2023-09-06
Method:X-RAY DIFFRACTION (2 Å)
Cite:X-ray structure and kinetic properties of ornithine transcarbamoylase from the human parasite Giardia lamblia.
Proteins, 76, 2009
3FA4
DownloadVisualize
BU of 3fa4 by Molmil
Crystal structure of 2,3-dimethylmalate lyase, a PEP mutase/isocitrate lyase superfamily member, triclinic crystal form
Descriptor: 2,3-dimethylmalate lyase, MAGNESIUM ION
Authors:Narayanan, B.C, Herzberg, O.
Deposit date:2008-11-14
Release date:2009-01-27
Last modified:2023-09-06
Method:X-RAY DIFFRACTION (2.18 Å)
Cite:Structure and function of 2,3-dimethylmalate lyase, a PEP mutase/isocitrate lyase superfamily member.
J.Mol.Biol., 386, 2009
1R8G
DownloadVisualize
BU of 1r8g by Molmil
Structure and function of YbdK
Descriptor: Hypothetical protein ybdK
Authors:Lehmann, C, Doseeva, V, Pullalarevu, S, Krajewski, W, Howard, A, Herzberg, O, Structure 2 Function Project (S2F)
Deposit date:2003-10-24
Release date:2004-08-17
Last modified:2021-07-28
Method:X-RAY DIFFRACTION (2.15 Å)
Cite:YbdK is a carboxylate-amine ligase with a gamma-glutamyl:Cysteine ligase activity: crystal structure and enzymatic assays
PROTEINS: STRUCT.,FUNCT.,GENET., 56, 2004
1RW1
DownloadVisualize
BU of 1rw1 by Molmil
YFFB (PA3664) PROTEIN
Descriptor: ISOPROPYL ALCOHOL, conserved hypothetical protein yffB
Authors:Teplyakov, A, Pullalarevu, S, Obmolova, G, Doseeva, V, Galkin, A, Herzberg, O, Dauter, M, Dauter, Z, Gilliland, G.L, Structure 2 Function Project (S2F)
Deposit date:2003-12-15
Release date:2004-11-02
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (1.02 Å)
Cite:Crystal structure of the YffB protein from Pseudomonas aeruginosa suggests a glutathione-dependent thiol reductase function.
Bmc Struct.Biol., 4, 2004
5TIB
DownloadVisualize
BU of 5tib by Molmil
Gasdermin-B C-terminal domain containing the polymorphism residues Arg299:Ser306 fused to maltose binding protein
Descriptor: ACETATE ION, SODIUM ION, Sugar ABC transporter substrate-binding protein,Gasdermin-B, ...
Authors:Chao, K, Herzberg, O.
Deposit date:2016-10-01
Release date:2017-02-01
Last modified:2023-10-04
Method:X-RAY DIFFRACTION (2.6 Å)
Cite:Human Gasdermin-B and disease: Sulfatide Binding, Caspase cleavage, and Structural impact of Asthma- and IBS-Associated Polymorphism
Proc.Natl.Acad.Sci.Usa, 2017
1BMC
DownloadVisualize
BU of 1bmc by Molmil
STRUCTURE OF A ZINC METALLO-BETA-LACTAMASE FROM BACILLUS CEREUS
Descriptor: METALLO-BETA-LACTAMASE, ZINC ION
Authors:Carfi, A, Pares, S, Duee, E, Dideberg, O.
Deposit date:1995-06-16
Release date:1996-08-28
Last modified:2024-02-07
Method:X-RAY DIFFRACTION (2.5 Å)
Cite:The 3-D structure of a zinc metallo-beta-lactamase from Bacillus cereus reveals a new type of protein fold.
EMBO J., 14, 1995
5TJ2
DownloadVisualize
BU of 5tj2 by Molmil
Gasdermin-B C-terminal domain containing the polymorphism residues Gly299:Ser306 fused to maltose binding protein
Descriptor: Sugar ABC transporter substrate-binding protein,Gasdermin-B fusion protein, alpha-D-glucopyranose-(1-4)-alpha-D-glucopyranose
Authors:Chao, L.K, Herzberg, O.
Deposit date:2016-10-03
Release date:2017-02-01
Last modified:2023-10-04
Method:X-RAY DIFFRACTION (2.8 Å)
Cite:Human Gasdermin-B and disease: Sulfatide Binding, Caspase cleavage, and Structural impact of Asthma- and IBS-Associated Polymorphism
Proc.Natl.Acad.Sci.Usa, 2017
3B8I
DownloadVisualize
BU of 3b8i by Molmil
Crystal Structure of Oxaloacetate Decarboxylase from Pseudomonas Aeruginosa (PA4872) in complex with oxalate and Mg2+.
Descriptor: GLYCEROL, MAGNESIUM ION, OXALATE ION, ...
Authors:Narayanan, B.C, Herzberg, O.
Deposit date:2007-11-01
Release date:2008-01-01
Last modified:2024-02-21
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:Structure and function of PA4872 from Pseudomonas aeruginosa, a novel class of oxaloacetate decarboxylase from the PEP mutase/isocitrate lyase superfamily.
Biochemistry, 47, 2008
5TJ4
DownloadVisualize
BU of 5tj4 by Molmil
Gasdermin-B C-terminal domain containing the polymorphism residues Gly299:Pro306 fused to maltose binding protein
Descriptor: SODIUM ION, Sugar ABC transporter substrate-binding protein,Gasdermin-B fusion protein, alpha-D-glucopyranose-(1-4)-alpha-D-glucopyranose
Authors:Chao, L.K, Herzberg, O.
Deposit date:2016-10-03
Release date:2017-02-01
Last modified:2023-10-04
Method:X-RAY DIFFRACTION (3.5 Å)
Cite:Gene polymorphism linked to increased asthma and IBD risk alters gasdermin-B structure, a sulfatide and phosphoinositide binding protein.
Proc. Natl. Acad. Sci. U.S.A., 114, 2017
5W90
DownloadVisualize
BU of 5w90 by Molmil
FEZ-1 metallo-beta-lactamase from Legionella gormanii modelled with unknown ligand
Descriptor: FEZ-1 protein, GLYCEROL, SULFATE ION, ...
Authors:Garcia-Saez, I, Mercuri, P.S, Kahn, R, Shabalin, I.G, Raczynska, J.E, Jaskolski, M, Minor, W, Papamicael, C, Frere, J.M, Galleni, M, Dideberg, O.
Deposit date:2017-06-22
Release date:2018-06-20
Last modified:2023-10-04
Method:X-RAY DIFFRACTION (1.78 Å)
Cite:Three-dimensional structure of FEZ-1, a monomeric subclass B3 metallo-beta-lactamase from Fluoribacter gormanii, in native form and in complex with D-captopril.
J. Mol. Biol., 325, 2003
5WCK
DownloadVisualize
BU of 5wck by Molmil
Native FEZ-1 metallo-beta-lactamase from Legionella gormanii
Descriptor: FEZ-1 protein, GLYCEROL, SULFATE ION, ...
Authors:Garcia-Saez, I, Mercuri, P.S, Kahn, R, Papamicael, C, Shabalin, I.G, Raczynska, J.E, Jaskolski, M, Minor, W, Frere, J.M, Galleni, M, Dideberg, O.
Deposit date:2017-06-30
Release date:2018-06-20
Last modified:2023-10-04
Method:X-RAY DIFFRACTION (1.65 Å)
Cite:Three-dimensional structure of FEZ-1, a monomeric subclass B3 metallo-beta-lactamase from Fluoribacter gormanii, in native form and in complex with D-captopril.
J. Mol. Biol., 325, 2003
1DBU
DownloadVisualize
BU of 1dbu by Molmil
Crystal structure of cysteinyl-tRNA(Pro) deacylase protein from H. influenzae (HI1434)
Descriptor: MERCURY (II) ION, cysteinyl-tRNA(Pro) deacylase
Authors:Zhang, H, Huang, K, Li, Z, Herzberg, O, Structure 2 Function Project (S2F)
Deposit date:1999-11-03
Release date:2000-06-14
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Crystal structure of YbaK protein from Haemophilus influenzae (HI1434) at 1.8 A resolution: functional implications.
Proteins, 40, 2000
1DBX
DownloadVisualize
BU of 1dbx by Molmil
Crystal structure of cysteinyl-tRNA(Pro) deacylase from H. influenzae (HI1434)
Descriptor: cysteinyl-tRNA(Pro) deacylase
Authors:Zhang, H, Huang, K, Li, Z, Herzberg, O, Structure 2 Function Project (S2F)
Deposit date:1999-11-03
Release date:2000-06-14
Last modified:2023-11-15
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Crystal structure of YbaK protein from Haemophilus influenzae (HI1434) at 1.8 A resolution: functional implications.
Proteins, 40, 2000
3CA8
DownloadVisualize
BU of 3ca8 by Molmil
Crystal structure of Escherichia coli YdcF, an S-adenosyl-L-methionine utilizing enzyme
Descriptor: (4S)-2-METHYL-2,4-PENTANEDIOL, Protein ydcF, SULFATE ION
Authors:Lim, K, Chao, K, Lehmann, C, Herzberg, O, Structure 2 Function Project (S2F)
Deposit date:2008-02-19
Release date:2008-05-06
Last modified:2024-04-03
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:The Escherichia coli YdcF binds S-adenosyl-L-methionine and adopts an alpha/beta-fold characteristic of nucleotide-utilizing enzymes.
Proteins, 72, 2008
1E31
DownloadVisualize
BU of 1e31 by Molmil
SURVIVIN DIMER H. SAPIENS
Descriptor: APOPTOSIS INHIBITOR SURVIVIN, COBALT (II) ION, ZINC ION
Authors:Chantalat, L, Skoufias, D.A, Margolis, R.L, Dideberg, O.
Deposit date:2000-06-04
Release date:2001-01-03
Last modified:2024-05-08
Method:X-RAY DIFFRACTION (2.71 Å)
Cite:Crystal Structure of Human Survivin Reveals a Bow Tie-Shaped Dimer with Two Unusual Alpha-Helical Extensions
Mol.Cell, 6, 2000
1JT1
DownloadVisualize
BU of 1jt1 by Molmil
FEZ-1 metallo-beta-lactamase from Legionella gormanii modelled with D-captopril
Descriptor: 1-(3-MERCAPTO-2-METHYL-PROPIONYL)-PYRROLIDINE-2-CARBOXYLIC ACID, CHLORIDE ION, FEZ-1, ...
Authors:Garcia-Saez, I, Mercuri, P.S, Kahn, R, Papamicael, C, Frere, J.M, Galleni, M, Dideberg, O.
Deposit date:2001-08-20
Release date:2003-01-21
Last modified:2023-10-25
Method:X-RAY DIFFRACTION (1.78 Å)
Cite:Three-dimensional Structure of FEZ-1, a Monomeric Subclass B3 Metallo-[beta]-lactamase from Fluoribacter gormanii, in Native Form and in Complex with -Captopril
J.MOL.BIOL., 325, 2003
1JOE
DownloadVisualize
BU of 1joe by Molmil
Crystal Structure of Autoinducer-2 Production Protein (LuxS) from Heamophilus influenzae
Descriptor: AUTOINDUCER-2 PRODUCTION PROTEIN, MERCURY (II) ION, ZINC ION
Authors:Chen, C.C.H, Parsons, J.F, Lim, K, Lehmann, C, Tempczyk, A, Eisenstein, E, Herzberg, O, Structure 2 Function Project (S2F)
Deposit date:2001-07-27
Release date:2001-08-08
Last modified:2024-02-07
Method:X-RAY DIFFRACTION (2.4 Å)
Cite:CRYSTAL STRUCTURE OF AUTOINDUCER-2 PRODUCTION PROTEIN (LUXS) FROM HEAMOPHILUS INFLUENZAE--A CASE OF TWINNED CRYSTAL
To be Published
1K07
DownloadVisualize
BU of 1k07 by Molmil
Native FEZ-1 metallo-beta-lactamase from Legionella gormanii
Descriptor: ACETATE ION, FEZ-1 beta-lactamase, GLYCEROL, ...
Authors:Garcia-Saez, I, Mercuri, P.S, Kahn, R, Papamicael, C, Frere, J.M, Galleni, M, Dideberg, O.
Deposit date:2001-09-18
Release date:2003-01-21
Last modified:2023-10-25
Method:X-RAY DIFFRACTION (1.65 Å)
Cite:Three-dimensional Structure of FEZ-1, a Monomeric Subclass B3 Metallo-[beta]-lactamase from Fluoribacter gormanii, in Native Form and in Complex with -Captopril
J.MOL.BIOL., 325, 2003
1JO0
DownloadVisualize
BU of 1jo0 by Molmil
Structure of HI1333, a Hypothetical Protein from Haemophilus influenzae with Structural Similarity to RNA-binding Proteins
Descriptor: GLYCEROL, HYPOTHETICAL PROTEIN HI1333
Authors:Willis, M.A, Krajewski, W, Chalamasetty, V.R, Reddy, P, Howard, A, Herzberg, O, Structure 2 Function Project (S2F)
Deposit date:2001-07-26
Release date:2002-11-20
Last modified:2024-02-07
Method:X-RAY DIFFRACTION (1.37 Å)
Cite:Structure of HI1333 (YhbY), a putative RNA-binding protein from Haemophilus influenzae
Proteins, 49, 2002
1K1E
DownloadVisualize
BU of 1k1e by Molmil
Structure Of the cobalt-bound form of the deoxy-D-mannose-octulosonate 8-phosphate phosphatase (YrbI) From Haemophilus Influenzae (HI1679)
Descriptor: 2-(N-MORPHOLINO)-ETHANESULFONIC ACID, COBALT (II) ION, GLYCEROL, ...
Authors:Lim, K, Herzberg, O, Structure 2 Function Project (S2F)
Deposit date:2001-09-25
Release date:2002-02-27
Last modified:2023-08-16
Method:X-RAY DIFFRACTION (1.67 Å)
Cite:From structure to function: YrbI from Haemophilus influenzae (HI1679) is a phosphatase.
Proteins, 46, 2002

222036

PDB entries from 2024-07-03

PDB statisticsPDBj update infoContact PDBjnumon