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4CW0
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BU of 4cw0 by Molmil
Crystal structure of cofactor-free urate oxidase anaerobically complexed with 9-methyl uric acid
Descriptor: (4S)-2-METHYL-2,4-PENTANEDIOL, 9-METHYL URIC ACID, URICASE
Authors:Bui, S, Steiner, R.A.
Deposit date:2014-03-31
Release date:2014-10-29
Last modified:2025-04-09
Method:X-RAY DIFFRACTION (1.5 Å)
Cite:Direct evidence for a peroxide intermediate and a reactive enzyme-substrate-dioxygen configuration in a cofactor-free oxidase.
Angew. Chem. Int. Ed. Engl., 53, 2014
4CW6
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BU of 4cw6 by Molmil
Crystal structure of cofactor-free urate oxidase in complex with the 5-peroxo derivative of 9-metyl uric acid (X-ray dose, 92 kGy)
Descriptor: (4S)-2-METHYL-2,4-PENTANEDIOL, (5S)-5-(dioxidanyl)-9-methyl-7H-purine-2,6,8-trione, 9-METHYL URIC ACID, ...
Authors:Bui, S, Steiner, R.A.
Deposit date:2014-04-01
Release date:2014-10-29
Last modified:2025-04-09
Method:X-RAY DIFFRACTION (1.28 Å)
Cite:Direct evidence for a peroxide intermediate and a reactive enzyme-substrate-dioxygen configuration in a cofactor-free oxidase.
Angew. Chem. Int. Ed. Engl., 53, 2014
3IRQ
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BU of 3irq by Molmil
Crystal structure of a Z-Z junction
Descriptor: DNA (5'-D(*AP*CP*CP*GP*CP*GP*CP*GP*AP*CP*GP*CP*GP*CP*G)-3'), DNA (5'-D(*GP*TP*CP*GP*CP*GP*CP*GP*TP*CP*GP*CP*GP*CP*G)-3'), Double-stranded RNA-specific adenosine deaminase
Authors:Athanasiadis, A, de Rosa, M.
Deposit date:2009-08-24
Release date:2010-05-19
Last modified:2023-09-06
Method:X-RAY DIFFRACTION (2.8 Å)
Cite:Crystal structure of a junction between two Z-DNA helices.
Proc.Natl.Acad.Sci.USA, 107, 2010
7ZGX
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BU of 7zgx by Molmil
S-layer Deinoxanthin Binding Complex, C1 symmetry
Descriptor: S-layer protein SlpA
Authors:Farci, D, Piano, D.
Deposit date:2022-04-04
Release date:2022-07-13
Last modified:2025-07-09
Method:ELECTRON MICROSCOPY (2.88 Å)
Cite:The cryo-EM structure of the S-layer deinoxanthin-binding complex of Deinococcus radiodurans informs properties of its environmental interactions.
J.Biol.Chem., 298, 2022
7ZGY
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BU of 7zgy by Molmil
S-layer Deinoxanthin Binding Complex, C3 symmetry
Descriptor: (3~{S},5~{R},6~{R})-5-[(3~{S},7~{R},12~{S},16~{S},20~{S})-3,7,12,16,20,24-hexamethyl-24-oxidanyl-pentacosyl]-4,4,6-trimethyl-cyclohexane-1,3-diol, COPPER (II) ION, FE (III) ION, ...
Authors:Farci, D, Piano, D.
Deposit date:2022-04-04
Release date:2022-07-13
Last modified:2025-07-02
Method:ELECTRON MICROSCOPY (2.54 Å)
Cite:The cryo-EM structure of the S-layer deinoxanthin-binding complex of Deinococcus radiodurans informs properties of its environmental interactions.
J.Biol.Chem., 298, 2022
3IRR
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BU of 3irr by Molmil
Crystal Structure of a Z-Z junction (with HEPES intercalating)
Descriptor: 4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID, DNA (5'-D(*A*CP*CP*GP*CP*GP*CP*GP*AP*CP*GP*CP*GP*CP*G)-3'), DNA (5'-D(*G*TP*CP*GP*CP*GP*CP*GP*TP*CP*GP*CP*GP*CP*G)-3'), ...
Authors:Athanasiadis, A, de Rosa, M.
Deposit date:2009-08-24
Release date:2010-05-19
Last modified:2023-09-06
Method:X-RAY DIFFRACTION (2.65 Å)
Cite:Crystal structure of a junction between two Z-DNA helices.
Proc.Natl.Acad.Sci.USA, 107, 2010
9D10
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BU of 9d10 by Molmil
Photoactive Yellow Protein, crystals from PEG, room temperature
Descriptor: 4'-HYDROXYCINNAMIC ACID, Photoactive yellow protein
Authors:Malla, T.N, Schmidt, M.
Deposit date:2024-08-07
Release date:2025-01-15
Last modified:2025-01-22
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Exploiting fourth-generation synchrotron radiation for enzyme and photoreceptor characterization.
Iucrj, 12, 2025
9CUF
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BU of 9cuf by Molmil
Room temperature SSX structure of ccNiR
Descriptor: 3,6,9,12,15,18,21,24,27,30,33,36,39-TRIDECAOXAHENTETRACONTANE-1,41-DIOL, CALCIUM ION, Cytochrome c-552, ...
Authors:Malla, T.N, Schmidt, M.
Deposit date:2024-07-26
Release date:2025-01-15
Last modified:2025-01-22
Method:X-RAY DIFFRACTION (3.3 Å)
Cite:Exploiting fourth-generation synchrotron radiation for enzyme and photoreceptor characterization.
Iucrj, 12, 2025
9D2H
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BU of 9d2h by Molmil
Stigmatella aurantica bacteriophytochrome protein 2 (SaBphP2), photosensory core module, investigated at ESRF(EBS) ID29. Dark Structure.
Descriptor: BENZAMIDINE, BILIVERDINE IX ALPHA, histidine kinase
Authors:Schmidt, M, Malla, T.N.
Deposit date:2024-08-08
Release date:2025-01-15
Last modified:2025-01-22
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:Exploiting fourth-generation synchrotron radiation for enzyme and photoreceptor characterization.
Iucrj, 12, 2025
8BHD
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BU of 8bhd by Molmil
N-terminal domain of Plasmodium berghei glutamyl-tRNA synthetase (Tbxo4 derivative crystal structure)
Descriptor: GLYCEROL, Glutamate--tRNA ligase, SULFATE ION, ...
Authors:Benas, P, Jaramillo Ponce, J.R, Legrand, P, Frugier, M, Sauter, C.
Deposit date:2022-10-31
Release date:2023-01-25
Last modified:2024-06-19
Method:X-RAY DIFFRACTION (3.17 Å)
Cite:Solution X-ray scattering highlights discrepancies in Plasmodium multi-aminoacyl-tRNA synthetase complexes.
Protein Sci., 32, 2023
5HZV
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BU of 5hzv by Molmil
Crystal structure of the zona pellucida module of human endoglin/CD105
Descriptor: GLYCEROL, Maltose-binding periplasmic protein,Endoglin, alpha-D-glucopyranose-(1-4)-alpha-D-glucopyranose
Authors:Bokhove, M, Saito, T, Jovine, L.
Deposit date:2016-02-03
Release date:2017-06-07
Last modified:2024-10-23
Method:X-RAY DIFFRACTION (2.7 Å)
Cite:Structural Basis of the Human Endoglin-BMP9 Interaction: Insights into BMP Signaling and HHT1.
Cell Rep, 19, 2017
4RMW
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BU of 4rmw by Molmil
Crystal structure of the D76A Beta-2 Microglobulin mutant
Descriptor: ACETATE ION, Beta-2-microglobulin, TRIETHYLENE GLYCOL
Authors:de Rosa, M, Bolognesi, M, Ricagno, S.
Deposit date:2014-10-22
Release date:2015-11-18
Last modified:2024-10-30
Method:X-RAY DIFFRACTION (1.4 Å)
Cite:Conformational dynamics in crystals reveal the molecular bases for D76N beta-2 microglobulin aggregation propensity.
Nat Commun, 9, 2018
4RMU
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BU of 4rmu by Molmil
Crystal structure of the D76E Beta-2 Microglobulin mutant
Descriptor: Beta-2-microglobulin, TRIETHYLENE GLYCOL
Authors:de Rosa, M, Bolognesi, M, Ricagno, S.
Deposit date:2014-10-22
Release date:2015-11-18
Last modified:2024-11-20
Method:X-RAY DIFFRACTION (1.4 Å)
Cite:Conformational dynamics in crystals reveal the molecular bases for D76N beta-2 microglobulin aggregation propensity.
Nat Commun, 9, 2018
4RMV
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BU of 4rmv by Molmil
Crystal structure of the D76H Beta-2 Microglobulin mutant
Descriptor: ACETATE ION, Beta-2-microglobulin, TRIETHYLENE GLYCOL
Authors:de Rosa, M, Bolognesi, M, Ricagno, S.
Deposit date:2014-10-22
Release date:2015-11-18
Last modified:2024-10-30
Method:X-RAY DIFFRACTION (1.463 Å)
Cite:Conformational dynamics in crystals reveal the molecular bases for D76N beta-2 microglobulin aggregation propensity.
Nat Commun, 9, 2018
6QQK
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BU of 6qqk by Molmil
Room temperature structure of blue light-irradiated AtPhot2LOV2 recorded after an accumulated dose of 34 kGy
Descriptor: FLAVIN MONONUCLEOTIDE, Phototropin-2
Authors:Aumonier, S, Gotthard, G, Royant, A.
Deposit date:2019-02-18
Release date:2019-06-19
Last modified:2024-11-13
Method:X-RAY DIFFRACTION (2.4 Å)
Cite:Specific radiation damage is a lesser concern at room temperature.
Iucrj, 6, 2019
6QSA
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BU of 6qsa by Molmil
Cryogenic temperature structure of blue light-irradiated AtPhot2LOV2 recorded after an accumulated dose of 48 kGy
Descriptor: FLAVIN MONONUCLEOTIDE, Phototropin-2
Authors:Aumonier, S, Gotthard, G, Royant, A.
Deposit date:2019-02-20
Release date:2019-06-19
Last modified:2024-11-06
Method:X-RAY DIFFRACTION (1.7 Å)
Cite:Specific radiation damage is a lesser concern at room temperature.
Iucrj, 6, 2019
6QQI
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BU of 6qqi by Molmil
Cryogenic temperature structure of blue light-irradiated AtPhot2LOV2 recorded after an accumulated dose of 24 kGy
Descriptor: FLAVIN MONONUCLEOTIDE, Phototropin-2
Authors:Aumonier, S, Gotthard, G, Royant, A.
Deposit date:2019-02-18
Release date:2019-06-19
Last modified:2024-10-23
Method:X-RAY DIFFRACTION (1.7 Å)
Cite:Specific radiation damage is a lesser concern at room temperature.
Iucrj, 6, 2019
6QQJ
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BU of 6qqj by Molmil
Room temperature structure of the ground state of AtPhot2LOV2 recorded after an accumulated dose of 354 kGy
Descriptor: FLAVIN MONONUCLEOTIDE, Phototropin-2
Authors:Aumonier, S, Gotthard, G, Royant, A.
Deposit date:2019-02-18
Release date:2019-06-19
Last modified:2024-01-24
Method:X-RAY DIFFRACTION (2.08 Å)
Cite:Specific radiation damage is a lesser concern at room temperature.
Iucrj, 6, 2019
9N9D
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BU of 9n9d by Molmil
MicroED structure of papain co-crystallized with E-64C
Descriptor: N-[1-HYDROXYCARBOXYETHYL-CARBONYL]LEUCYLAMINO-2-METHYL-BUTANE, Papain
Authors:Vlahakis, N, Rodriguez, J.A.
Deposit date:2025-02-10
Release date:2025-03-26
Method:ELECTRON CRYSTALLOGRAPHY (2.2 Å)
Cite:Combining MicroED and native mass spectrometry for structural discovery of enzyme-biosynthetic inhibitor complexes.
Biorxiv, 2025
2YFD
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BU of 2yfd by Molmil
STRUCTURAL AND FUNCTIONAL INSIGHTS OF DR2231 PROTEIN, THE MAZG-LIKE NUCLEOSIDE TRIPHOSPHATE PYROPHOSPHOHYDROLASE FROM DEINOCOCCUS RADIODURANS, COMPLEXED WITH Mg and dUMP
Descriptor: 2'-DEOXYURIDINE 5'-MONOPHOSPHATE, ACETATE ION, CHLORIDE ION, ...
Authors:Goncalves, A.M.D, De Sanctis, D, Mcsweeney, S.M.
Deposit date:2011-04-05
Release date:2011-07-06
Last modified:2024-10-16
Method:X-RAY DIFFRACTION (1.767 Å)
Cite:Structural and Functional Insights Into Dr2231 Protein, the Mazg-Like Nucleoside Triphosphate Pyrophosphohydrolase from Deinococcus Radiodurans.
J.Biol.Chem., 286, 2011
2YF9
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BU of 2yf9 by Molmil
STRUCTURAL AND FUNCTIONAL INSIGHTS OF DR2231 PROTEIN, THE MAZG-LIKE NUCLEOSIDE TRIPHOSPHATE PYROPHOSPHOHYDROLASE FROM DEINOCOCCUS RADIODURANS, NATIVE FORM
Descriptor: CHLORIDE ION, MAZG-LIKE NUCLEOSIDE TRIPHOSPHATE PYROPHOSPHOHYDROLASE
Authors:Goncalves, A.M.D, De Sanctis, D, Mcsweeney, S.M.
Deposit date:2011-04-04
Release date:2011-07-06
Last modified:2023-12-20
Method:X-RAY DIFFRACTION (1.899 Å)
Cite:Structural and Functional Insights Into Dr2231 Protein, the Mazg-Like Nucleoside Triphosphate Pyrophosphohydrolase from Deinococcus Radiodurans.
J.Biol.Chem., 286, 2011
2YEU
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BU of 2yeu by Molmil
Structural and functional insights of DR2231 protein, the MazG-like nucleoside triphosphate pyrophosphohydrolase from Deinococcus radiodurans, complex with Gd
Descriptor: DR2231, GADOLINIUM ATOM, GLYCEROL, ...
Authors:Goncalves, A.M.D, de Sanctis, D, McSweeney, S.M.
Deposit date:2011-03-30
Release date:2011-07-06
Last modified:2024-11-20
Method:X-RAY DIFFRACTION (2 Å)
Cite:Structural and Functional Insights Into Dr2231 Protein, the Mazg-Like Nucleoside Triphosphate Pyrophosphohydrolase from Deinococcus Radiodurans.
J.Biol.Chem., 286, 2011
9NBQ
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BU of 9nbq by Molmil
MicroED structure of papain co-crystallized with E-64D
Descriptor: Papain, ethyl (3S)-3-hydroxy-4-({(2S)-4-methyl-1-[(3-methylbutyl)amino]-1-oxopentan-2-yl}amino)-4-oxobutanoate
Authors:Vlahakis, N, Rodriguez, J.A.
Deposit date:2025-02-14
Release date:2025-03-26
Method:ELECTRON CRYSTALLOGRAPHY (2.3 Å)
Cite:Combining MicroED and native mass spectrometry for structural discovery of enzyme-biosynthetic inhibitor complexes.
Biorxiv, 2025
9NAR
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BU of 9nar by Molmil
MicroED structure of papain microcrystals soaked with E-64 for 10 minutes
Descriptor: N-[N-[1-HYDROXYCARBOXYETHYL-CARBONYL]LEUCYLAMINO-BUTYL]-GUANIDINE, Papain
Authors:Vlahakis, N.W, Rodriguez, J.A.
Deposit date:2025-02-12
Release date:2025-03-26
Method:ELECTRON CRYSTALLOGRAPHY (2.5 Å)
Cite:Combining MicroED and native mass spectrometry for structural discovery of enzyme-biosynthetic inhibitor complexes.
Biorxiv, 2025
9NAE
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BU of 9nae by Molmil
MicroED structure of papain co-crystallized with E-64
Descriptor: N-[N-[1-HYDROXYCARBOXYETHYL-CARBONYL]LEUCYLAMINO-BUTYL]-GUANIDINE, Papain
Authors:Vlahakis, N, Rodriguez, J.A.
Deposit date:2025-02-11
Release date:2025-03-26
Method:ELECTRON CRYSTALLOGRAPHY (2.3 Å)
Cite:Combining MicroED and native mass spectrometry for structural discovery of enzyme-biosynthetic inhibitor complexes.
Biorxiv, 2025

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PDB entries from 2025-07-09

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