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7T7R
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BU of 7t7r by Molmil
Structure of Munc13-1 C1-C2B-MUN-C2C trimer between lipid bilayers
Descriptor: Protein unc-13 homolog A
Authors:Grushin, K, Sindelar, C.V.
Deposit date:2021-12-15
Release date:2022-02-09
Last modified:2024-02-28
Method:ELECTRON MICROSCOPY (10 Å)
Cite:Munc13 structural transitions and oligomers that may choreograph successive stages in vesicle priming for neurotransmitter release.
Proc.Natl.Acad.Sci.USA, 119, 2022
7T7C
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The hexagonal organization of Munc13-1 C1-C2B-MUN-C2C domains between lipid bilayers
Descriptor: Protein unc-13 homolog A Chimera
Authors:Grushin, K, Sindelar, C.V.
Deposit date:2021-12-15
Release date:2022-02-09
Last modified:2024-02-28
Method:ELECTRON MICROSCOPY (10 Å)
Cite:Munc13 structural transitions and oligomers that may choreograph successive stages in vesicle priming for neurotransmitter release.
Proc.Natl.Acad.Sci.USA, 119, 2022
7T7X
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BU of 7t7x by Molmil
Munc13-1 C1-C2B-MUN-C2C Upright conformation spanning two lipid bilayers
Descriptor: Protein unc-13 homolog A
Authors:Grushin, K, Sindelar, C.V.
Deposit date:2021-12-15
Release date:2022-02-09
Last modified:2024-02-28
Method:ELECTRON MICROSCOPY (10 Å)
Cite:Munc13 structural transitions and oligomers that may choreograph successive stages in vesicle priming for neurotransmitter release.
Proc.Natl.Acad.Sci.USA, 119, 2022
7T7V
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BU of 7t7v by Molmil
Munc13-1 C1-C2B-MUN-C2C Lateral conformation on lipid bilayer surface
Descriptor: Protein unc-13 homolog A
Authors:Grushin, K, Sindelar, C.V.
Deposit date:2021-12-15
Release date:2022-02-09
Last modified:2024-02-28
Method:ELECTRON MICROSCOPY (10 Å)
Cite:Munc13 structural transitions and oligomers that may choreograph successive stages in vesicle priming for neurotransmitter release.
Proc.Natl.Acad.Sci.USA, 119, 2022
7VVL
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BU of 7vvl by Molmil
PTH-bound human PTH1R in complex with Gs (class2)
Descriptor: Guanine nucleotide-binding protein G(I)/G(S)/G(O) subunit gamma-2, Guanine nucleotide-binding protein G(I)/G(S)/G(T) subunit beta-1, Guanine nucleotide-binding protein G(s) subunit alpha isoforms short, ...
Authors:Kobayashi, K, Kusakizako, T, Miyauchi, H, Tomita, A, Kobayashi, K, Shihoya, W, Yamashita, K, Nishizawa, T, Kato, H.E, Nureki, O.
Deposit date:2021-11-06
Release date:2022-08-03
Last modified:2024-10-09
Method:ELECTRON MICROSCOPY (2.8 Å)
Cite:Endogenous ligand recognition and structural transition of a human PTH receptor.
Mol.Cell, 82, 2022
7VVN
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PTH-bound human PTH1R in complex with Gs (class4)
Descriptor: Guanine nucleotide-binding protein G(I)/G(S)/G(O) subunit gamma-2, Guanine nucleotide-binding protein G(I)/G(S)/G(T) subunit beta-1, Guanine nucleotide-binding protein G(s) subunit alpha isoforms short, ...
Authors:Kobayashi, K, Kusakizako, T, Miyauchi, H, Tomita, A, Kobayashi, K, Shihoya, W, Yamashita, K, Nishizawa, T, Kato, H.E, Nureki, O.
Deposit date:2021-11-06
Release date:2022-08-03
Last modified:2024-10-16
Method:ELECTRON MICROSCOPY (3.8 Å)
Cite:Endogenous ligand recognition and structural transition of a human PTH receptor.
Mol.Cell, 82, 2022
7VVK
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BU of 7vvk by Molmil
PTH-bound human PTH1R in complex with Gs (class1)
Descriptor: Guanine nucleotide-binding protein G(I)/G(S)/G(O) subunit gamma-2, Guanine nucleotide-binding protein G(I)/G(S)/G(T) subunit beta-1, Guanine nucleotide-binding protein G(s) subunit alpha isoforms short, ...
Authors:Kobayashi, K, Kusakizako, T, Miyauchi, H, Tomita, A, Kobayashi, K, Shihoya, W, Yamashita, K, Nishizawa, T, Kato, H.E, Nureki, O.
Deposit date:2021-11-06
Release date:2022-08-03
Last modified:2024-10-30
Method:ELECTRON MICROSCOPY (3.3 Å)
Cite:Endogenous ligand recognition and structural transition of a human PTH receptor.
Mol.Cell, 82, 2022
7VVM
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BU of 7vvm by Molmil
PTH-bound human PTH1R in complex with Gs (class3)
Descriptor: Guanine nucleotide-binding protein G(I)/G(S)/G(O) subunit gamma-2, Guanine nucleotide-binding protein G(I)/G(S)/G(T) subunit beta-1, Guanine nucleotide-binding protein G(s) subunit alpha isoforms short, ...
Authors:Kobayashi, K, Kusakizako, T, Miyauchi, H, Tomita, A, Kobayashi, K, Shihoya, W, Yamashita, K, Nishizawa, T, Kato, H.E, Nureki, O.
Deposit date:2021-11-06
Release date:2022-08-03
Last modified:2024-10-30
Method:ELECTRON MICROSCOPY (3.2 Å)
Cite:Endogenous ligand recognition and structural transition of a human PTH receptor.
Mol.Cell, 82, 2022
7VVO
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BU of 7vvo by Molmil
PTH-bound human PTH1R in complex with Gs (class5)
Descriptor: Guanine nucleotide-binding protein G(I)/G(S)/G(O) subunit gamma-2, Guanine nucleotide-binding protein G(I)/G(S)/G(T) subunit beta-1, Guanine nucleotide-binding protein G(s) subunit alpha isoforms short, ...
Authors:Kobayashi, K, Kusakizako, T, Miyauchi, H, Tomita, A, Kobayashi, K, Shihoya, W, Yamashita, K, Nishizawa, T, Kato, H.E, Nureki, O.
Deposit date:2021-11-06
Release date:2022-08-03
Last modified:2024-10-30
Method:ELECTRON MICROSCOPY (4.1 Å)
Cite:Endogenous ligand recognition and structural transition of a human PTH receptor.
Mol.Cell, 82, 2022
7VVJ
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BU of 7vvj by Molmil
PTHrP-bound human PTH1R in complex with Gs
Descriptor: Guanine nucleotide-binding protein G(I)/G(S)/G(O) subunit gamma-2, Guanine nucleotide-binding protein G(I)/G(S)/G(T) subunit beta-1, Guanine nucleotide-binding protein G(s) subunit alpha isoforms short, ...
Authors:Kobayashi, K, Kusakizako, T, Miyauchi, H, Tomita, A, Kobayashi, K, Shihoya, W, Yamashita, K, Nishizawa, T, Kato, H.E, Nureki, O.
Deposit date:2021-11-06
Release date:2022-08-03
Last modified:2024-10-23
Method:ELECTRON MICROSCOPY (3.2 Å)
Cite:Endogenous ligand recognition and structural transition of a human PTH receptor.
Mol.Cell, 82, 2022
5B5K
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BU of 5b5k by Molmil
Crystal structure of Izumo1, the mammalian sperm ligand for egg Juno
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, 4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID, Izumo sperm-egg fusion protein 1
Authors:Nishimura, K, Han, L, De Sanctis, D, Jovine, L.
Deposit date:2016-05-11
Release date:2016-07-06
Last modified:2024-10-23
Method:X-RAY DIFFRACTION (2.5 Å)
Cite:The structure of sperm Izumo1 reveals unexpected similarities with Plasmodium invasion proteins.
Curr.Biol., 26, 2016
7B81
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BU of 7b81 by Molmil
Crystal structure of Azotobacter vinelandii L-rhamnose 1-dehydrogenase (NAD bound-form)
Descriptor: NICOTINAMIDE-ADENINE-DINUCLEOTIDE, Short-chain dehydrogenase/reductase SDR
Authors:Yoshiwara, K, Watanabe, Y, Watanabe, S.
Deposit date:2020-12-12
Release date:2021-02-03
Last modified:2024-05-01
Method:X-RAY DIFFRACTION (2.092 Å)
Cite:Crystal structure of l-rhamnose 1-dehydrogenase involved in the nonphosphorylative pathway of l-rhamnose metabolism in bacteria.
Febs Lett., 595, 2021
3IF5
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BU of 3if5 by Molmil
Crystal Structure Analysis of Mglu
Descriptor: Salt-tolerant glutaminase
Authors:Yoshimune, K, Shirakihara, Y.
Deposit date:2009-07-24
Release date:2009-08-04
Last modified:2024-03-20
Method:X-RAY DIFFRACTION (2.44 Å)
Cite:Crystal structure of salt-tolerant glutaminase from Micrococcus luteus K-3 in the presence and absence of its product L-glutamate and its activator Tris.
Febs J., 277, 2010
5XFE
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BU of 5xfe by Molmil
Luciferin-regenerating enzyme solved by SAD using XFEL (refined against 11,000 patterns)
Descriptor: (4S)-2-METHYL-2,4-PENTANEDIOL, Luciferin regenerating enzyme, MAGNESIUM ION, ...
Authors:Yamashita, K, Pan, D, Okuda, T, Murai, T, Kodan, A, Yamaguchi, T, Gomi, K, Kajiyama, N, Kato, H, Ago, H, Yamamoto, M, Nakatsu, T.
Deposit date:2017-04-10
Release date:2017-08-30
Last modified:2023-09-06
Method:X-RAY DIFFRACTION (1.5 Å)
Cite:Experimental phase determination with selenomethionine or mercury-derivatization in serial femtosecond crystallography
IUCrJ, 4, 2017
7E5P
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BU of 7e5p by Molmil
Aptamer enhancing peroxidase activity of myoglobin
Descriptor: DNA (5'-D(*GP*GP*GP*TP*GP*GP*GP*TP*TP*GP*GP*GP*AP*GP*GP*G)-3')
Authors:Tsukakoshi, K, Matsugami, A, Khunathai, K, Kanazashi, M, Yamagishi, Y, Nakama, K, Oshikawa, D, Hayashi, F, Kuno, H, Ikebukuro, K.
Deposit date:2021-02-19
Release date:2021-06-16
Last modified:2024-05-15
Method:SOLUTION NMR
Cite:G-quadruplex-forming aptamer enhances the peroxidase activity of myoglobin against luminol.
Nucleic Acids Res., 49, 2021
1GOB
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BU of 1gob by Molmil
COOPERATIVE STABILIZATION OF ESCHERICHIA COLI RIBONUCLEASE HI BY INSERTION OF GLY-80B AND GLY-77-> ALA SUBSTITUTION
Descriptor: RIBONUCLEASE H
Authors:Ishikawa, K, Kimura, S, Nakamura, H, Morikawa, K, Kanaya, S.
Deposit date:1993-05-10
Release date:1994-01-31
Last modified:2024-02-07
Method:X-RAY DIFFRACTION (2 Å)
Cite:Cooperative stabilization of Escherichia coli ribonuclease HI by insertion of Gly-80b and Gly-77-->Ala substitution.
Biochemistry, 32, 1993
1GOC
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BU of 1goc by Molmil
COOPERATIVE STABILIZATION OF ESCHERICHIA COLI RIBONUCLEASE HI BY INSERTION OF GLY-80B AND GLY-77-> ALA SUBSTITUTION
Descriptor: RIBONUCLEASE H
Authors:Ishikawa, K, Kimura, S, Nakamura, H, Morikawa, K, Kanaya, S.
Deposit date:1993-05-10
Release date:1994-01-31
Last modified:2024-02-07
Method:X-RAY DIFFRACTION (2 Å)
Cite:Cooperative stabilization of Escherichia coli ribonuclease HI by insertion of Gly-80b and Gly-77-->Ala substitution.
Biochemistry, 32, 1993
1GOA
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BU of 1goa by Molmil
COOPERATIVE STABILIZATION OF ESCHERICHIA COLI RIBONUCLEASE HI BY INSERTION OF GLY-80B AND GLY-77-> ALA SUBSTITUTION
Descriptor: RIBONUCLEASE H
Authors:Ishikawa, K, Kimura, S, Nakamura, H, Morikawa, K, Kanaya, S.
Deposit date:1993-05-10
Release date:1994-01-31
Last modified:2024-02-07
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:Cooperative stabilization of Escherichia coli ribonuclease HI by insertion of Gly-80b and Gly-77-->Ala substitution.
Biochemistry, 32, 1993
7Y9P
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BU of 7y9p by Molmil
Xylitol dehydrogenase S96C/S99C/Y102C mutant(thermostabilized form) from Pichia stipitis
Descriptor: DI(HYDROXYETHYL)ETHER, GLYCEROL, SULFATE ION, ...
Authors:Yoshiwara, K, Watanabe, Y, Watanabe, S.
Deposit date:2022-06-25
Release date:2023-02-15
Last modified:2024-05-29
Method:X-RAY DIFFRACTION (2.8 Å)
Cite:Molecular evolutionary insight of structural zinc atom in yeast xylitol dehydrogenases and its application in bioethanol production by lignocellulosic biomass.
Sci Rep, 13, 2023
7YH4
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BU of 7yh4 by Molmil
Crystal structure of human cytosolic beta-alanyl lysine dipeptidase (PM20D2)
Descriptor: Xaa-Arg dipeptidase, ZINC ION
Authors:Chandravanshi, K, Gaur, N.K, Kumar, A, Makde, R.D.
Deposit date:2022-07-12
Release date:2023-08-02
Last modified:2024-05-29
Method:X-RAY DIFFRACTION (2.03 Å)
Cite:Crystal structure of human cytosolic beta-alanyl lysine dipeptidase (PM20D2)
To Be Published
8GRF
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BU of 8grf by Molmil
Crystal structure of F-box protein in the ternary complex with adaptor protein Skp1(DL) and its substrate
Descriptor: 1,2-ETHANEDIOL, Citrate synthase, E3 ubiquitin ligase complex SCF subunit, ...
Authors:Nishio, K, Nakatsukasa, K, Kamura, T, Mizushima, T.
Deposit date:2022-09-01
Release date:2023-04-26
Last modified:2024-05-29
Method:X-RAY DIFFRACTION (2.53 Å)
Cite:Defective import of mitochondrial metabolic enzyme elicits ectopic metabolic stress.
Sci Adv, 9, 2023
8GR9
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BU of 8gr9 by Molmil
Crystal structure of peroxisomal citrate synthase (Cit2) from Saccharomyces cerevisiae in complex with oxaloacetate and coenzyme-A
Descriptor: CHLORIDE ION, COENZYME A, Citrate synthase, ...
Authors:Nishio, K, Nakatsukasa, K, Kamura, T, Mizushima, T.
Deposit date:2022-09-01
Release date:2023-04-26
Last modified:2024-05-29
Method:X-RAY DIFFRACTION (1.48 Å)
Cite:Defective import of mitochondrial metabolic enzyme elicits ectopic metabolic stress.
Sci Adv, 9, 2023
8GR8
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BU of 8gr8 by Molmil
Crystal structure of peroxisomal citrate synthase (Cit2) from Saccharomycescerevisiae
Descriptor: 4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID, CHLORIDE ION, Citrate synthase, ...
Authors:Nishio, K, Nakatsukasa, K, Kamura, T, Mizushima, T.
Deposit date:2022-09-01
Release date:2023-04-26
Last modified:2024-05-29
Method:X-RAY DIFFRACTION (2.39 Å)
Cite:Defective import of mitochondrial metabolic enzyme elicits ectopic metabolic stress.
Sci Adv, 9, 2023
8GRE
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BU of 8gre by Molmil
F-box protein in complex with skp1(FL) and substrate
Descriptor: Citrate synthase, E3 ubiquitin ligase complex SCF subunit, F-box protein UCC1, ...
Authors:Nishio, K, Nakatsukasa, K, Kamura, T, Mizushima, T.
Deposit date:2022-09-01
Release date:2023-04-26
Last modified:2024-05-29
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:Defective import of mitochondrial metabolic enzyme elicits ectopic metabolic stress.
Sci Adv, 9, 2023
8GQZ
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BU of 8gqz by Molmil
Crystal structure of mitochondrial citrate synthase (Cit1) from Saccharomyces cerevisiae
Descriptor: ACETATE ION, CHLORIDE ION, Citrate synthase, ...
Authors:Nishio, K, Nakatsukasa, K, Kamura, T, Mizushima, T.
Deposit date:2022-08-31
Release date:2023-04-26
Last modified:2024-05-29
Method:X-RAY DIFFRACTION (1.42 Å)
Cite:Defective import of mitochondrial metabolic enzyme elicits ectopic metabolic stress.
Sci Adv, 9, 2023

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