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5CDE
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BU of 5cde by Molmil
R372A mutant of Xaa-Pro dipeptidase from Xanthomonas campestris
Descriptor: Proline dipeptidase, SULFATE ION, ZINC ION
Authors:Kumar, A, Are, V, Ghosh, B, Jamdar, S, Makde, R.
Deposit date:2015-07-03
Release date:2016-09-14
Last modified:2024-03-20
Method:X-RAY DIFFRACTION (1.85 Å)
Cite:R372A mutant of Xaa-Pro dipeptidase from Xanthomonas campestris at 1.85 Angstrom resolution
To Be Published
5C9O
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BU of 5c9o by Molmil
Crystal structure of recombinant PLL lectin from Photorhabdus luminescens at 1.5 A resolution
Descriptor: GLYCEROL, PLL lectin
Authors:Kumar, A, Sykorova, P, Demo, G, Dobes, P, Hyrsl, P, Wimmerova, M.
Deposit date:2015-06-28
Release date:2016-10-19
Last modified:2024-10-16
Method:X-RAY DIFFRACTION (1.5 Å)
Cite:A Novel Fucose-binding Lectin from Photorhabdus luminescens (PLL) with an Unusual Heptabladed beta-Propeller Tetrameric Structure.
J.Biol.Chem., 291, 2016
5CDL
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BU of 5cdl by Molmil
Proline dipeptidase from Deinococcus radiodurans (selenomethionine derivative)
Descriptor: MANGANESE (II) ION, PHOSPHATE ION, Proline dipeptidase
Authors:Kumar, A, Are, V, Ghosh, B, Jamdar, S, Makde, R.
Deposit date:2015-07-04
Release date:2016-08-10
Last modified:2024-10-30
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Proline dipeptidase from Deinococcus radiodurans (selenomethionine derivative)
To Be Published
5CDV
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BU of 5cdv by Molmil
Proline dipeptidase from Deinococcus radiodurans R1
Descriptor: MANGANESE (II) ION, PHOSPHATE ION, Proline dipeptidase, ...
Authors:Kumar, A, Are, V, Ghosh, B, Jamdar, S, Makde, R.
Deposit date:2015-07-05
Release date:2016-08-10
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (1.45 Å)
Cite:Proline dipeptidase from Deinococcus radiodurans R1 at 1.45 Angstrom resolution
To Be Published
5CIK
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BU of 5cik by Molmil
Crystal Structure of Xaa-Pro dipeptidase from Xanthomonas campestris in citrate condition
Descriptor: CITRIC ACID, GLYCEROL, Proline dipeptidase
Authors:Kumar, A, Are, V, Ghosh, B, Agrawal, U, Jamdar, S, Makde, R.D.
Deposit date:2015-07-13
Release date:2016-07-20
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:Crystal Structure of Xaa-Pro dipeptidase from Xanthomonas campestris in citrate condition
To Be Published
4R60
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BU of 4r60 by Molmil
Crystal Structure of Xaa-Pro dipeptidase from Xanthomonas campestris
Descriptor: MANGANESE (II) ION, PHOSPHATE ION, Proline dipeptidase, ...
Authors:Kumar, A, Ghosh, B, Are, V.N, Jamdar, S.N, Makde, R.D, Sharma, S.M.
Deposit date:2014-08-22
Release date:2014-09-17
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (1.83 Å)
Cite:Crystal Structure of Xaa-Pro dipeptidase from Xanthomonas campestris
to be published
3B2Q
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BU of 3b2q by Molmil
Intermediate position of ATP on its trail to the binding pocket inside the subunit B mutant R416W of the energy converter A1Ao ATP synthase
Descriptor: 4-(2-AMINOETHYL)BENZENESULFONYL FLUORIDE, ADENOSINE-5'-TRIPHOSPHATE, CITRIC ACID, ...
Authors:Kumar, A, Manimekalai, M.S.S, Balakrishna, A.M, Hunke, C, Gruber, G.
Deposit date:2007-10-19
Release date:2008-09-09
Last modified:2023-11-01
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:Spectroscopic and crystallographic studies of the mutant R416W give insight into the nucleotide binding traits of subunit B of the A1Ao ATP synthase
Proteins, 75, 2009
6JQV
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BU of 6jqv by Molmil
Crystal structure of Arabidopsis thaliana NRP2
Descriptor: NAP1-related protein 2
Authors:Kumar, A, Vasudevan, D.
Deposit date:2019-04-01
Release date:2019-07-10
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (3.42 Å)
Cite:Structural Characterization ofArabidopsis thalianaNAP1-Related Protein 2 (AtNRP2) and Comparison with its Homolog AtNRP1.
Molecules, 24, 2019
6JMI
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BU of 6jmi by Molmil
Crystal structure of M.tuberculosis Rv0081
Descriptor: SULFATE ION, Uncharacterized HTH-type transcriptional regulator Rv0081
Authors:Kumar, A, Phulera, S, Mande, C.S.
Deposit date:2019-03-11
Release date:2019-04-10
Last modified:2025-03-12
Method:X-RAY DIFFRACTION (2.896 Å)
Cite:Structural basis of hypoxic gene regulation by the Rv0081 transcription factor of Mycobacterium tuberculosis.
Febs Lett., 593, 2019
9ERJ
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BU of 9erj by Molmil
Cryo-EM structure of sodium pumping Rnf complex from Acetobacterium woodii reduced with low potential Ferredoxin
Descriptor: FE2/S2 (INORGANIC) CLUSTER, FLAVIN MONONUCLEOTIDE, IRON/SULFUR CLUSTER, ...
Authors:Kumar, A, Schuller, J.M.
Deposit date:2024-03-23
Release date:2025-03-05
Last modified:2025-03-19
Method:ELECTRON MICROSCOPY (2.9 Å)
Cite:Molecular principles of redox-coupled sodium pumping of the ancient Rnf machinery.
Nat Commun, 16, 2025
9ERL
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BU of 9erl by Molmil
Cryo-EM structure of sodium pumping Rnf complex from Acetobacterium woodii in apo state
Descriptor: FE2/S2 (INORGANIC) CLUSTER, FLAVIN MONONUCLEOTIDE, IRON/SULFUR CLUSTER, ...
Authors:Kumar, A, Schuller, J.M.
Deposit date:2024-03-23
Release date:2025-03-05
Last modified:2025-03-19
Method:ELECTRON MICROSCOPY (3 Å)
Cite:Molecular principles of redox-coupled sodium pumping of the ancient Rnf machinery.
Nat Commun, 16, 2025
9ERK
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BU of 9erk by Molmil
Cryo-EM structure of sodium pumping Rnf complex from Acetobacterium woodii reduced with low potential ferredoxin (consensus map)
Descriptor: FE2/S2 (INORGANIC) CLUSTER, FLAVIN MONONUCLEOTIDE, IRON/SULFUR CLUSTER, ...
Authors:Kumar, A, Schuller, J.M.
Deposit date:2024-03-23
Release date:2025-03-05
Last modified:2025-03-19
Method:ELECTRON MICROSCOPY (2.8 Å)
Cite:Molecular principles of redox-coupled sodium pumping of the ancient Rnf machinery.
Nat Commun, 16, 2025
9ERI
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BU of 9eri by Molmil
Cryo-EM structure of sodium pumping Rnf complex from Acetobacterium woodii bound to NADH
Descriptor: FE2/S2 (INORGANIC) CLUSTER, FLAVIN MONONUCLEOTIDE, IRON/SULFUR CLUSTER, ...
Authors:Kumar, A, Schuller, J.M.
Deposit date:2024-03-23
Release date:2025-03-05
Last modified:2025-07-02
Method:ELECTRON MICROSCOPY (3.3 Å)
Cite:Molecular principles of redox-coupled sodium pumping of the ancient Rnf machinery.
Nat Commun, 16, 2025
8S76
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BU of 8s76 by Molmil
Soluble epoxide hydrolase in complex with PROTAC JSF67
Descriptor: 1,2-ETHANEDIOL, Bifunctional epoxide hydrolase 2, DI(HYDROXYETHYL)ETHER, ...
Authors:Kumar, A, Schoenfeld, J, Hiesinger, K, Lillich, F, Proschak, E, Knapp, S, Structural Genomics Consortium (SGC)
Deposit date:2024-02-29
Release date:2025-03-12
Method:X-RAY DIFFRACTION (1.48 Å)
Cite:Soluble epoxide hydrolase in complex with PROTAC JSF67
To Be Published
8S77
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BU of 8s77 by Molmil
Soluble epoxide hydrolase in complex with PROTAC JSF234
Descriptor: 1,2-ETHANEDIOL, Bifunctional epoxide hydrolase 2, DI(HYDROXYETHYL)ETHER, ...
Authors:Kumar, A, Schoenfeld, J, Hiesinger, K, Lillich, F, Proschak, E, Knapp, S, Structural Genomics Consortium (SGC)
Deposit date:2024-02-29
Release date:2025-03-12
Method:X-RAY DIFFRACTION (1.36 Å)
Cite:Soluble epoxide hydrolase in complex with PROTAC JSF234
To Be Published
8S75
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BU of 8s75 by Molmil
Soluble epoxide hydrolase in complex with PROTAC FL412
Descriptor: 1,2-ETHANEDIOL, Bifunctional epoxide hydrolase 2, TETRAETHYLENE GLYCOL, ...
Authors:Kumar, A, Schoenfeld, J, Hiesinger, K, Lillich, F, Proschak, E, Knapp, S, Structural Genomics Consortium (SGC)
Deposit date:2024-02-29
Release date:2025-03-12
Method:X-RAY DIFFRACTION (1.42 Å)
Cite:Soluble epoxide hydrolase in complex with PROTAC FL412
To Be Published
5Y06
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BU of 5y06 by Molmil
Structural characterization of msmeg_4306 from Mycobacterium smegmatis
Descriptor: GLYCEROL, ZINC ION, msmeg_4306
Authors:Kumar, A, Karthikeyan, S.
Deposit date:2017-07-14
Release date:2018-05-02
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (2.606 Å)
Cite:Crystal structure of the MSMEG_4306 gene product from Mycobacterium smegmatis
Acta Crystallogr F Struct Biol Commun, 74, 2018
5Y05
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BU of 5y05 by Molmil
Structural characterization of msmeg_4306 from Mycobacterium smegmatis
Descriptor: ZINC ION, msmeg_4306
Authors:Kumar, A, Karthikeyan, S.
Deposit date:2017-07-14
Release date:2018-05-02
Last modified:2024-03-27
Method:X-RAY DIFFRACTION (2.799 Å)
Cite:Crystal structure of the MSMEG_4306 gene product from Mycobacterium smegmatis
Acta Crystallogr F Struct Biol Commun, 74, 2018
1YXS
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BU of 1yxs by Molmil
Crystal Structure of Kinase Pim1 with P123M mutation
Descriptor: IMIDAZOLE, Proto-oncogene serine/threonine-protein kinase Pim-1
Authors:Kumar, A, Mandiyan, V, Suzuki, Y, Zhang, C, Rice, J, Tsai, J, Artis, D.R, Ibrahim, P, Bremer, R.
Deposit date:2005-02-22
Release date:2005-04-26
Last modified:2024-04-03
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:Crystal structures of proto-oncogene kinase Pim1: a target of aberrant somatic hypermutations in diffuse large cell lymphoma.
J.Mol.Biol., 348, 2005
1YXU
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BU of 1yxu by Molmil
Crystal Structure of Kinase Pim1 in Complex with AMP
Descriptor: ADENOSINE MONOPHOSPHATE, IMIDAZOLE, Proto-oncogene serine/threonine-protein kinase Pim-1
Authors:Kumar, A, Mandiyan, V, Suzuki, Y, Zhang, C, Rice, J, Tsai, J, Artis, D.R, Ibrahim, P, Bremer, R.
Deposit date:2005-02-22
Release date:2005-04-26
Last modified:2024-02-14
Method:X-RAY DIFFRACTION (2.24 Å)
Cite:Crystal Structures of Proto-oncogene Kinase Pim1: A Target of Aberrant Somatic Hypermutations in Diffuse Large Cell Lymphoma.
J.Mol.Biol., 348, 2005
1YXX
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BU of 1yxx by Molmil
Crystal Structure of Kinase Pim1 in complex with (3E)-3-[(4-HYDROXYPHENYL)IMINO]-1H-INDOL-2(3H)-ONE
Descriptor: (3E)-3-[(4-HYDROXYPHENYL)IMINO]-1H-INDOL-2(3H)-ONE, IMIDAZOLE, Proto-oncogene serine/threonine-protein kinase Pim-1
Authors:Kumar, A, Mandiyan, V, Suzuki, Y, Zhang, C, Rice, J, Tsai, J, Artis, D.R, Ibrahim, P, Bremer, R.
Deposit date:2005-02-22
Release date:2005-04-26
Last modified:2024-02-14
Method:X-RAY DIFFRACTION (2 Å)
Cite:Crystal structures of proto-oncogene kinase Pim1: a target of aberrant somatic hypermutations in diffuse large cell lymphoma.
J.Mol.Biol., 348, 2005
1YWV
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BU of 1ywv by Molmil
Crystal Structures of Proto-Oncogene Kinase Pim1: a Target of Aberrant Somatic Hypermutations in Diffuse Large Cell Lymphoma
Descriptor: IMIDAZOLE, Proto-oncogene serine/threonine-protein kinase Pim-1
Authors:Kumar, A, Mandiyan, V, Suzuki, Y, Zhang, C, Rice, J, Tsai, J, Artis, D.R, Ibrahim, P, Bremer, R.
Deposit date:2005-02-18
Release date:2005-04-26
Last modified:2024-02-14
Method:X-RAY DIFFRACTION (2 Å)
Cite:Crystal structures of proto-oncogene kinase Pim1: a target of aberrant somatic hypermutations in diffuse large cell lymphoma.
J.Mol.Biol., 348, 2005
1YXV
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BU of 1yxv by Molmil
Crystal Structure of Kinase Pim1 in complex with 3,4-Dihydroxy-1-methylquinolin-2(1H)-one
Descriptor: 3,4-DIHYDROXY-1-METHYLQUINOLIN-2(1H)-ONE, IMIDAZOLE, Proto-oncogene serine/threonine-protein kinase Pim-1
Authors:Kumar, A, Mandiyan, V, Suzuki, Y, Zhang, C, Rice, J, Tsai, J, Artis, D.R, Ibrahim, P, Bremer, R.
Deposit date:2005-02-22
Release date:2005-04-26
Last modified:2024-02-14
Method:X-RAY DIFFRACTION (2 Å)
Cite:Crystal Structures of Proto-oncogene Kinase Pim1: A Target of Aberrant Somatic Hypermutations in Diffuse Large Cell Lymphoma.
J.Mol.Biol., 348, 2005
1YXT
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BU of 1yxt by Molmil
Crystal Structure of Kinase Pim1 in complex with AMPPNP
Descriptor: PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER, Proto-oncogene serine/threonine-protein kinase Pim-1
Authors:Kumar, A, Mandiyan, V, Suzuki, Y, Zhang, C, Rice, J, Tsai, J, Artis, D.R, Ibrahim, P, Bremer, R.
Deposit date:2005-02-22
Release date:2005-04-26
Last modified:2024-02-14
Method:X-RAY DIFFRACTION (2 Å)
Cite:Crystal structures of proto-oncogene kinase Pim1: a target of aberrant somatic hypermutations in diffuse large cell lymphoma.
J.Mol.Biol., 348, 2005
2RKW
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BU of 2rkw by Molmil
Intermediate position of ATP on its trail to the binding pocket inside the subunit B mutant R416W of the energy converter A1Ao ATP synthase
Descriptor: V-type ATP synthase beta chain
Authors:Kumar, A, Manimekalai, M.S.S, Balakrishna, A.M, Hunke, C, Gruber, G.
Deposit date:2007-10-18
Release date:2008-09-09
Last modified:2023-10-25
Method:X-RAY DIFFRACTION (2.81 Å)
Cite:Spectroscopic and crystallographic studies of the mutant R416W give insight into the nucleotide binding traits of subunit B of the A1Ao ATP synthase
Proteins, 75, 2009

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