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9M3R
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BU of 9m3r by Molmil
Crystal structure of human pyruvate dehydrogenase kinase isoform 1 in complex with ATP competitive inhibitor 29
Descriptor: 1,2-ETHANEDIOL, 3-[4-[4-(ethylamino)-6-fluoranyl-2-oxidanylidene-3H-benzimidazol-1-yl]phenoxy]benzenesulfonyl fluoride, GLYCEROL, ...
Authors:Xu, Z.H, Chen, S.
Deposit date:2025-03-03
Release date:2025-06-25
Method:X-RAY DIFFRACTION (2.14 Å)
Cite:Discovery of ATP competitive PDHK1/2 dual inhibitors.
Bioorg.Med.Chem.Lett., 122, 2025
9ODR
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BU of 9odr by Molmil
Structure of CRBN TBD bound to compound C1
Descriptor: (3S)-3-(6-oxo-6,8-dihydro-2H,7H-spiro[furo[2,3-e]isoindole-3,4'-piperidin]-7-yl)piperidine-2,6-dione, Protein cereblon, ZINC ION
Authors:Strickland, C, Rice, C.
Deposit date:2025-04-27
Release date:2025-05-28
Last modified:2025-06-25
Method:X-RAY DIFFRACTION (2.42 Å)
Cite:Discovery and Characterization of PVTX-321 as a Potent and Orally Bioavailable Estrogen Receptor Degrader for ER+/HER2- Breast Cancer.
J.Med.Chem., 68, 2025
9M3T
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BU of 9m3t by Molmil
Crystal structure of human pyruvate dehydrogenase kinase isoform 2 in complex with ATP competitive inhibitor 22
Descriptor: 2-chloranyl-4-[[(3R)-1-[(3S)-7-(ethylamino)-5-fluoranyl-3-methyl-2-oxidanylidene-1H-indol-3-yl]piperidin-3-yl]amino]benzoic acid, DIMETHYL SULFOXIDE, N-(2-AMINOETHYL)-2-{3-CHLORO-4-[(4-ISOPROPYLBENZYL)OXY]PHENYL} ACETAMIDE, ...
Authors:Xu, Z.H, Chen, S.
Deposit date:2025-03-03
Release date:2025-06-11
Method:X-RAY DIFFRACTION (2.08 Å)
Cite:Discovery of ATP competitive PDHK1/2 dual inhibitors.
Bioorg.Med.Chem.Lett., 122, 2025
9ODS
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BU of 9ods by Molmil
Structure of CRBN TBD bound to compound C3
Descriptor: (1P)-1-[(4S)-8H-spiro[furo[2,3-c]imidazo[1,2-a]pyridine-7,4'-piperidin]-3-yl]pyrimidine-2,4(1H,3H)-dione, Protein cereblon, ZINC ION
Authors:Strickland, C, Rice, C.
Deposit date:2025-04-27
Release date:2025-05-28
Last modified:2025-06-25
Method:X-RAY DIFFRACTION (2.61 Å)
Cite:Discovery and Characterization of PVTX-321 as a Potent and Orally Bioavailable Estrogen Receptor Degrader for ER+/HER2- Breast Cancer.
J.Med.Chem., 68, 2025
9M3U
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BU of 9m3u by Molmil
Crystal structure of human pyruvate dehydrogenase kinase isoform 2 in complex with ATP competitive inhibitor 24
Descriptor: 1,2-ETHANEDIOL, 2-cyano-N-[(3R)-1-[(3S)-3-ethyl-7-(ethylamino)-5-fluoranyl-2-oxidanylidene-1H-indol-3-yl]piperidin-3-yl]-2-azaspiro[3.3]heptane-6-carboxamide, GLYCEROL, ...
Authors:Xu, Z.H, Chen, S, Han, L.
Deposit date:2025-03-03
Release date:2025-06-25
Method:X-RAY DIFFRACTION (1.92 Å)
Cite:Discovery of ATP competitive PDHK1/2 dual inhibitors.
Bioorg.Med.Chem.Lett., 122, 2025
7RTN
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BU of 7rtn by Molmil
Cryo-EM structure of bluetongue virus capsid protein VP5 at low endosomal pH
Descriptor: Outer capsid protein VP5
Authors:Xia, X, Wu, W.N, Cui, Y.X, Roy, P, Zhou, Z.H.
Deposit date:2021-08-13
Release date:2021-11-03
Last modified:2025-05-21
Method:ELECTRON MICROSCOPY (3.4 Å)
Cite:Bluetongue virus capsid protein VP5 perforates membranes at low endosomal pH during viral entry.
Nat Microbiol, 6, 2021
7RTO
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BU of 7rto by Molmil
Cryo-EM structure of bluetongue virus capsid protein VP5 at low endosomal pH intermediate state 2
Descriptor: Outer capsid protein VP5
Authors:Xia, X, Wu, W.N, Cui, Y.X, Roy, P, Zhou, Z.H.
Deposit date:2021-08-13
Release date:2021-11-03
Last modified:2025-05-21
Method:ELECTRON MICROSCOPY (3.8 Å)
Cite:Bluetongue virus capsid protein VP5 perforates membranes at low endosomal pH during viral entry.
Nat Microbiol, 6, 2021
5D1F
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BU of 5d1f by Molmil
Crystal structure of maize PDRP bound with AMP and Hg2+
Descriptor: ADENOSINE MONOPHOSPHATE, MAGNESIUM ION, MERCURY (II) ION, ...
Authors:Jiang, L, Chen, Z.
Deposit date:2015-08-04
Release date:2016-02-24
Last modified:2025-03-12
Method:X-RAY DIFFRACTION (3.4 Å)
Cite:Structural Basis of Reversible Phosphorylation by Maize Pyruvate Orthophosphate Dikinase Regulatory Protein
Plant Physiol., 170, 2016
6M1J
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BU of 6m1j by Molmil
The DNA Gyrase B ATP binding domain of PSEUDOMONAS AERUGINOSA in complex with compound 12x
Descriptor: 1-[5-[6-fluoranyl-8-(methylamino)-4-[3-(trifluoromethyl)pyrazol-1-yl]-9H-pyrido[2,3-b]indol-3-yl]pyrimidin-2-yl]cyclopropane-1-carboxylic acid, DIMETHYL SULFOXIDE, DNA gyrase subunit B, ...
Authors:Xu, Z.H, Zhou, Z.
Deposit date:2020-02-26
Release date:2020-09-02
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (1.701 Å)
Cite:Discovery of Pyrido[2,3-b]indole Derivatives with Gram-Negative Activity Targeting Both DNA Gyrase and Topoisomerase IV.
J.Med.Chem., 63, 2020
4NQJ
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BU of 4nqj by Molmil
Structure of coiled-coil domain
Descriptor: DODECYL-BETA-D-MALTOSIDE, E3 ubiquitin-protein ligase TRIM69
Authors:Yang, M, Li, Y.
Deposit date:2013-11-25
Release date:2014-05-21
Last modified:2024-04-03
Method:X-RAY DIFFRACTION (2.152 Å)
Cite:Structural insights into the TRIM family of ubiquitin E3 ligases.
Cell Res., 24, 2014
8KA4
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BU of 8ka4 by Molmil
Arabidopsis AP endonuclease ARP complex with 21bp THF-containing DNA
Descriptor: 2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE, DNA-(apurinic or apyrimidinic site) endonuclease, chloroplastic, ...
Authors:Guo, W.T, Wu, B.X.
Deposit date:2023-08-02
Release date:2024-02-21
Last modified:2024-06-19
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:Structural insights into the catalytic mechanism of the AP endonuclease AtARP.
Structure, 32, 2024
8KA5
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BU of 8ka5 by Molmil
Arabidopsis AP endonuclease ARP complex with 20bp THF-containing DNA
Descriptor: 1',2'-DIDEOXYRIBOFURANOSE-5'-PHOSPHATE, DNA (43-MER), DNA-(apurinic or apyrimidinic site) endonuclease, ...
Authors:Guo, W.T, Wu, B.X.
Deposit date:2023-08-02
Release date:2024-02-21
Last modified:2024-06-19
Method:X-RAY DIFFRACTION (2.8 Å)
Cite:Structural insights into the catalytic mechanism of the AP endonuclease AtARP.
Structure, 32, 2024
8KA3
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BU of 8ka3 by Molmil
Arabidopsis AP endonuclease ARP complex with 22bp THF-containing DNA
Descriptor: 1',2'-DIDEOXYRIBOFURANOSE-5'-PHOSPHATE, DNA (43-MER), DNA-(apurinic or apyrimidinic site) endonuclease, ...
Authors:Guo, W.T, Wu, B.X.
Deposit date:2023-08-02
Release date:2024-02-21
Last modified:2024-06-19
Method:X-RAY DIFFRACTION (3 Å)
Cite:Structural insights into the catalytic mechanism of the AP endonuclease AtARP.
Structure, 32, 2024
9E9H
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BU of 9e9h by Molmil
Crystal structure of human KRAS G12C covalently bound to DEL triazine compound 5
Descriptor: (3S)-N,5-dimethyl-3-({4-[3-(morpholin-4-yl)phenyl]-6-(2-propanoyl-2,6-diazaspiro[3.4]octan-6-yl)-1,3,5-triazin-2-yl}amino)hexanamide, CALCIUM ION, GTPase KRas, ...
Authors:Mohr, C.
Deposit date:2024-11-08
Release date:2025-02-26
Last modified:2025-03-05
Method:X-RAY DIFFRACTION (1.65 Å)
Cite:Identification of Structurally Novel KRAS G12C Inhibitors through Covalent DNA-Encoded Library Screening.
J.Med.Chem., 68, 2025
9E9I
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BU of 9e9i by Molmil
Crystal Structure of human KRAS G12C covalently bound to nopinone-derived naphthol compound 21
Descriptor: 1,2-ETHANEDIOL, 1-{6-[(4P,6R,8R)-3-fluoro-4-(3-hydroxynaphthalen-1-yl)-7,7-dimethyl-5,6,7,8-tetrahydro-6,8-methanoquinolin-2-yl]-2,6-diazaspiro[3.4]octan-2-yl}propan-1-one, GUANOSINE-5'-DIPHOSPHATE, ...
Authors:Mohr, C.
Deposit date:2024-11-08
Release date:2025-02-26
Last modified:2025-03-05
Method:X-RAY DIFFRACTION (1.18 Å)
Cite:Identification of Structurally Novel KRAS G12C Inhibitors through Covalent DNA-Encoded Library Screening.
J.Med.Chem., 68, 2025
6M1S
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BU of 6m1s by Molmil
The DNA Gyrase B ATP binding domain of PSEUDOMONAS AERUGINOSA in complex with compound 12o
Descriptor: 3-[5-[8-(ethylamino)-6-fluoranyl-4-[3-(trifluoromethyl)pyrazol-1-yl]-9H-pyrido[2,3-b]indol-3-yl]pyrimidin-2-yl]oxy-2,2-dimethyl-propanoic acid, CHLORIDE ION, DNA gyrase subunit B, ...
Authors:Xu, Z.H, Zhou, Z.
Deposit date:2020-02-26
Release date:2020-09-02
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (2.254 Å)
Cite:Discovery of Pyrido[2,3-b]indole Derivatives with Gram-Negative Activity Targeting Both DNA Gyrase and Topoisomerase IV.
J.Med.Chem., 63, 2020
3LON
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BU of 3lon by Molmil
HCV NS3-4a protease domain with ketoamide inhibitor narlaprevir
Descriptor: (1R,2S,5S)-3-[N-({1-[(tert-butylsulfonyl)methyl]cyclohexyl}carbamoyl)-3-methyl-L-valyl]-N-{(1S)-1-[(1R)-2-(cyclopropylamino)-1-hydroxy-2-oxoethyl]pentyl}-6,6-dimethyl-3-azabicyclo[3.1.0]hexane-2-carboxamide, BETA-MERCAPTOETHANOL, Genome polyprotein, ...
Authors:Prongay, A.J.
Deposit date:2010-02-04
Release date:2011-01-19
Last modified:2024-04-03
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:Candidate selection and preclinical evaluation culminating in the discovery of Narlaprevir (SCH 900518): A potent, selective and orally efficacious second generation HCV NS3 serine protease inhibitor
To be Published
8I8A
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BU of 8i8a by Molmil
Cryo-EM structure of the major capsid protein VP39 of Autographa californica multiple nucleopolyhedrovirus (AcMNPV)
Descriptor: Major viral capsid protein
Authors:Jia, X, Zhang, Q.
Deposit date:2023-02-03
Release date:2023-12-13
Last modified:2024-10-16
Method:ELECTRON MICROSCOPY (3.21 Å)
Cite:Architecture of the baculovirus nucleocapsid revealed by cryo-EM.
Nat Commun, 14, 2023
8I8C
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BU of 8i8c by Molmil
Plug structure of the Autographa californica multiple nucleopolyhedrovirus (AcMNPV)
Descriptor: Occlusion-derived virus envelope/capsid protein, P40
Authors:Jia, X, Gao, Y, Zhang, Q.
Deposit date:2023-02-03
Release date:2023-12-13
Method:ELECTRON MICROSCOPY (4.93 Å)
Cite:Architecture of the baculovirus nucleocapsid revealed by cryo-EM.
Nat Commun, 14, 2023
8I8B
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BU of 8i8b by Molmil
Outer shell and inner layer structures of Autographa californica multiple nucleopolyhedrovirus (AcMNPV)
Descriptor: 38K, AcOrf-109 peptide, Early 49 Daa protein, ...
Authors:Jia, X, Gao, Y, Zhang, Q.
Deposit date:2023-02-03
Release date:2023-12-13
Last modified:2024-10-16
Method:ELECTRON MICROSCOPY (4.31 Å)
Cite:Architecture of the baculovirus nucleocapsid revealed by cryo-EM.
Nat Commun, 14, 2023
6U6M
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BU of 6u6m by Molmil
Crystal structure of a vaccine-elicited anti-HIV-1 rhesus macaque antibody DH840.1
Descriptor: DH840.1 Fab heavy chain, DH840.1 Fab light chain
Authors:Chen, W.-H, Choe, M, Saunders, K.O, Joyce, M.G.
Deposit date:2019-08-30
Release date:2021-03-24
Last modified:2024-11-06
Method:X-RAY DIFFRACTION (2.683 Å)
Cite:Structural and genetic convergence of HIV-1 neutralizing antibodies in vaccinated non-human primates.
Plos Pathog., 17, 2021
6U6O
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BU of 6u6o by Molmil
Crystal structure of a vaccine-elicited anti-HIV-1 rhesus macaque antibody DH846
Descriptor: DH846 Fab heavy chain, DH846 Fab light chain
Authors:Chen, W.-H, Choe, M, Saunders, K.O, Joyce, M.G.
Deposit date:2019-08-30
Release date:2021-03-24
Last modified:2024-10-09
Method:X-RAY DIFFRACTION (2.806 Å)
Cite:Structural and genetic convergence of HIV-1 neutralizing antibodies in vaccinated non-human primates.
Plos Pathog., 17, 2021
9MJ3
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BU of 9mj3 by Molmil
Crystal structure of the VRC01-class antibody 12A01, derived from GT1.1 vaccination, in complex with eOD-GT8
Descriptor: 12A01 Fab heavy chain, 12A01 Fab light chain, 2-acetamido-2-deoxy-beta-D-glucopyranose, ...
Authors:Agrawal, S, Wilson, I.A.
Deposit date:2024-12-13
Release date:2025-05-28
Last modified:2025-06-04
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:Precise targeting of HIV broadly neutralizing antibody precursors in humans.
Science, 2025
9MJC
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BU of 9mjc by Molmil
Crystal structure of the VRC01-class antibody 4D01 derived from GT1.1 vaccination
Descriptor: 4D01 Fab heavy chain, 4D01 Fab light chain
Authors:Agrawal, S, Wilson, I.A.
Deposit date:2024-12-14
Release date:2025-05-28
Last modified:2025-06-04
Method:X-RAY DIFFRACTION (2.7 Å)
Cite:Precise targeting of HIV broadly neutralizing antibody precursors in humans.
Science, 2025
9MK4
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BU of 9mk4 by Molmil
Crystal structure of the VRC01-class antibody 12A01 derived from GT1.1 vaccination
Descriptor: 12A01 Fab heavy chain, 12A01 Fab light chain
Authors:Agrawal, S, Wilson, I.A.
Deposit date:2024-12-16
Release date:2025-05-28
Last modified:2025-06-04
Method:X-RAY DIFFRACTION (3 Å)
Cite:Precise targeting of HIV broadly neutralizing antibody precursors in humans.
Science, 2025

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PDB entries from 2025-07-09

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