Loading
PDBj
MenuPDBj@FacebookPDBj@X(formerly Twitter)PDBj@BlueSkyPDBj@YouTubewwPDB FoundationwwPDBDonate
RCSB PDBPDBeBMRBAdv. SearchSearch help
Search by PDB author
5LOS
DownloadVisualize
BU of 5los by Molmil
Piriformospora indica PIIN_05872
Descriptor: PIIN_05872, SULFATE ION, ZINC ION
Authors:Hartmann, M.D, Albrecht, R, Martin, J, Lupas, A.N.
Deposit date:2016-08-09
Release date:2018-05-02
Last modified:2024-05-08
Method:X-RAY DIFFRACTION (2 Å)
Cite:A secreted fungal histidine- and alanine-rich protein regulates metal ion homeostasis and oxidative stress.
New Phytol., 227, 2020
3ZMF
DownloadVisualize
BU of 3zmf by Molmil
Salmonella enterica SadA 303-358 fused to GCN4 adaptors (SadAK2)
Descriptor: GENERAL CONTROL PROTEIN GCN4, PUTATIVE INNER MEMBRANE PROTEIN
Authors:Hartmann, M.D, Hernandez Alvarez, B, Albrecht, R, Lupas, A.N.
Deposit date:2013-02-08
Release date:2013-02-20
Last modified:2023-12-20
Method:X-RAY DIFFRACTION (1.85 Å)
Cite:A New Expression System for Protein Crystallization Using Trimeric Coiled-Coil Adaptors.
Protein Eng.Des.Sel., 21, 2008
2WG6
DownloadVisualize
BU of 2wg6 by Molmil
Proteasome-Activating Nucleotidase (PAN) N-domain (57-134) from Archaeoglobus fulgidus fused to GCN4, P61A Mutant
Descriptor: GENERAL CONTROL PROTEIN GCN4, PROTEASOME-ACTIVATING NUCLEOTIDASE
Authors:Hartmann, M.D, Djuranovic, S, Ursinus, A, Zeth, K, Lupas, A.N.
Deposit date:2009-04-15
Release date:2009-04-28
Last modified:2023-12-13
Method:X-RAY DIFFRACTION (2.5 Å)
Cite:Structure and Activity of the N-Terminal Substrate Recognition Domains in Proteasomal Atpases.
Mol.Cell, 34, 2009
2XZR
DownloadVisualize
BU of 2xzr by Molmil
Escherichia coli Immunoglobulin-binding protein EibD 391-438 FUSED TO GCN4 ADAPTORS
Descriptor: CHLORIDE ION, IMMUNOGLOBULIN-BINDING PROTEIN EIBD
Authors:Hartmann, M.D, Hernandez Alvarez, B, Ridderbusch, O, Deiss, S, Lupas, A.N.
Deposit date:2010-11-28
Release date:2011-07-20
Last modified:2023-12-20
Method:X-RAY DIFFRACTION (2.8 Å)
Cite:The Structure of E. Coli Igg-Binding Protein D Suggests a General Model for Bending and Binding in Trimeric Autotransporter Adhesins.
Structure, 19, 2011
2WG5
DownloadVisualize
BU of 2wg5 by Molmil
Proteasome-Activating Nucleotidase (PAN) N-domain (57-134) from Archaeoglobus fulgidus fused to GCN4
Descriptor: GENERAL CONTROL PROTEIN GCN4, PROTEASOME-ACTIVATING NUCLEOTIDASE
Authors:Hartmann, M.D, Djuranovic, S, Ursinus, A, Zeth, K, Lupas, A.N.
Deposit date:2009-04-15
Release date:2009-04-28
Last modified:2023-12-13
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:Structure and Activity of the N-Terminal Substrate Recognition Domains in Proteasomal Atpases.
Mol.Cell, 34, 2009
2WPY
DownloadVisualize
BU of 2wpy by Molmil
GCN4 leucine zipper mutant with one VxxNxxx motif coordinating chloride
Descriptor: CHLORIDE ION, GENERAL CONTROL PROTEIN GCN4
Authors:Zeth, K, Hartmann, M.D, Albrecht, R, Lupas, A.N, Hernandez Alvarez, B.
Deposit date:2009-08-12
Release date:2009-11-03
Last modified:2024-11-20
Method:X-RAY DIFFRACTION (1.75 Å)
Cite:A Coiled-Coil Motif that Sequesters Ions to the Hydrophobic Core.
Proc.Natl.Acad.Sci.USA, 106, 2009
2WPZ
DownloadVisualize
BU of 2wpz by Molmil
GCN4 leucine zipper mutant with two VxxNxxx motifs coordinating chloride
Descriptor: CHLORIDE ION, GENERAL CONTROL PROTEIN GCN4
Authors:Zeth, K, Hartmann, M.D, Albrecht, R, Lupas, A.N, Hernandez Alvarez, B.
Deposit date:2009-08-12
Release date:2009-11-03
Last modified:2024-11-20
Method:X-RAY DIFFRACTION (1.25 Å)
Cite:A Coiled-Coil Motif that Sequesters Ions to the Hydrophobic Core.
Proc.Natl.Acad.Sci.USA, 106, 2009
4CTI
DownloadVisualize
BU of 4cti by Molmil
Escherichia coli EnvZ histidine kinase catalytic part fused to Archaeoglobus fulgidus Af1503 HAMP domain
Descriptor: OSMOLARITY SENSOR PROTEIN ENVZ, AF1503
Authors:Ferris, H.U, Coles, M, Lupas, A.N, Hartmann, M.D.
Deposit date:2014-03-13
Release date:2014-04-09
Last modified:2023-12-20
Method:X-RAY DIFFRACTION (2.847 Å)
Cite:Crystallographic Snapshot of the Escherichia Coli Envz Histidine Kinase in an Active Conformation.
J.Struct.Biol., 186, 2014
9QE5
DownloadVisualize
BU of 9qe5 by Molmil
VCB in complex with VHL-binding compound 82
Descriptor: (2~{S},4~{R})-1-[(2~{S})-1-(1-fluoranylcyclopropyl)carbonylpiperidin-2-yl]carbonyl-~{N}-[(1~{S})-1-[4-(4-methyl-1,3-thiazol-5-yl)phenyl]ethyl]-4-oxidanyl-pyrrolidine-2-carboxamide, Elongin-B, Elongin-C, ...
Authors:Braun, M.B, Dierlamm, N, Hartmann, M.D.
Deposit date:2025-03-07
Release date:2025-04-23
Method:X-RAY DIFFRACTION (2.5 Å)
Cite:Breaking Barriers in PROTAC Design: Improving Solubility of USP7-Targeting Degraders
To Be Published
9QE4
DownloadVisualize
BU of 9qe4 by Molmil
VCB in complex with VHL-binding compound 114
Descriptor: (2~{S},4~{R})-1-[(2~{S})-2-[(1-fluoranylcyclopropyl)carbonylamino]-3,3-dimethyl-butanoyl]-~{N}-[(1~{S})-1-[4-(4-methyl-1,3-thiazol-5-yl)phenyl]ethyl]-4-oxidanyl-pyrrolidine-2-carboxamide, Elongin-B, Elongin-C, ...
Authors:Braun, M.B, Dierlamm, N, Hartmann, M.D.
Deposit date:2025-03-07
Release date:2025-04-23
Method:X-RAY DIFFRACTION (2.28 Å)
Cite:Breaking Barriers in PROTAC Design: Improving Solubility of USP7-Targeting Degraders
To Be Published
4USI
DownloadVisualize
BU of 4usi by Molmil
Nitrogen regulatory protein PII from Chlamydomonas reinhardtii in complex with MgATP and 2-oxoglutarate
Descriptor: 2-OXOGLUTARIC ACID, ADENOSINE-5'-TRIPHOSPHATE, MAGNESIUM ION, ...
Authors:Chellamuthu, V.R, Forchhammer, K, Hartmann, M.D.
Deposit date:2014-07-08
Release date:2014-12-03
Last modified:2024-01-10
Method:X-RAY DIFFRACTION (1.45 Å)
Cite:A Widespread Glutamine-Sensing Mechanism in the Plant Kingdom.
Cell(Cambridge,Mass.), 159, 2014
8BC6
DownloadVisualize
BU of 8bc6 by Molmil
Cereblon isoform 4 from Magnetospirillum gryphiswaldense in complex an aspartimide degron peptide
Descriptor: Cereblon isoform 4, GLN-MET-GLN-SNN, PHOSPHATE ION, ...
Authors:Heim, C, Hartmann, M.D.
Deposit date:2022-10-15
Release date:2023-01-11
Last modified:2024-10-16
Method:X-RAY DIFFRACTION (1.72 Å)
Cite:Identification and structural basis of C-terminal cyclic imides as natural degrons for cereblon.
Biochem.Biophys.Res.Commun., 637, 2022
8BC7
DownloadVisualize
BU of 8bc7 by Molmil
Cereblon isoform 4 from Magnetospirillum gryphiswaldense in complex an aminoglutarimide degron peptide
Descriptor: Cereblon isoform 4, PHE-PHE-GLU-GLN-MET-GLN-QCI, S-Thalidomide, ...
Authors:Heim, C, Albrecht, R, Spring, A.K, Hartmann, M.D.
Deposit date:2022-10-15
Release date:2023-01-11
Last modified:2024-11-13
Method:X-RAY DIFFRACTION (1.719 Å)
Cite:Identification and structural basis of C-terminal cyclic imides as natural degrons for cereblon.
Biochem.Biophys.Res.Commun., 637, 2022
8RDR
DownloadVisualize
BU of 8rdr by Molmil
Cereblon isoform 4 from Magnetospirillum gryphiswaldense in complex with spiro-isoxazol based compound 8g
Descriptor: (5~{S})-3-(2-nitrophenyl)-1-oxa-2,9-diazaspiro[4.5]dec-2-ene-8,10-dione, Cereblon isoform 4, PHOSPHATE ION, ...
Authors:Bischof, L, Hartmann, M.D.
Deposit date:2023-12-08
Release date:2024-04-10
Method:X-RAY DIFFRACTION (1.58 Å)
Cite:Discovery and characterization of potent spiro-isoxazole-based cereblon ligands with a novel binding mode.
Eur.J.Med.Chem., 270, 2024
8RDS
DownloadVisualize
BU of 8rds by Molmil
Cereblon isoform 4 from Magnetospirillum gryphiswaldense in complex with spiro-isoxazol based compound 8i
Descriptor: (5~{S})-3-(2-methoxyphenyl)-1-oxa-2,9-diazaspiro[4.5]dec-2-ene-8,10-dione, Cereblon isoform 4, PHOSPHATE ION, ...
Authors:Bischof, L, Hartmann, M.D.
Deposit date:2023-12-08
Release date:2024-04-10
Method:X-RAY DIFFRACTION (2 Å)
Cite:Discovery and characterization of potent spiro-isoxazole-based cereblon ligands with a novel binding mode.
Eur.J.Med.Chem., 270, 2024
8RDT
DownloadVisualize
BU of 8rdt by Molmil
Cereblon isoform 4 from Magnetospirillum gryphiswaldense in complex with spiro-isoxazol based compound 8j
Descriptor: (5~{S})-3-(2,3,4-trimethoxyphenyl)-1-oxa-2,9-diazaspiro[4.5]dec-2-ene-8,10-dione, Cereblon isoform 4, PHOSPHATE ION, ...
Authors:Bischof, L, Hartmann, M.D.
Deposit date:2023-12-08
Release date:2024-04-10
Method:X-RAY DIFFRACTION (1.95 Å)
Cite:Discovery and characterization of potent spiro-isoxazole-based cereblon ligands with a novel binding mode.
Eur.J.Med.Chem., 270, 2024
8RDQ
DownloadVisualize
BU of 8rdq by Molmil
Cereblon isoform 4 from Magnetospirillum gryphiswaldense in complex with spiro-isoxazol based compound 8b
Descriptor: (5S)-3-(2,4-dichlorophenyl)-1-oxa-2,9-diazaspiro[4.5]dec-2-ene-8,10-dione, Cereblon isoform 4, PHOSPHATE ION, ...
Authors:Bischof, L, Hartmann, M.D.
Deposit date:2023-12-08
Release date:2024-04-10
Method:X-RAY DIFFRACTION (2.03 Å)
Cite:Discovery and characterization of potent spiro-isoxazole-based cereblon ligands with a novel binding mode.
Eur.J.Med.Chem., 270, 2024
8RDP
DownloadVisualize
BU of 8rdp by Molmil
Cereblon isoform 4 from Magnetospirillum gryphiswaldense in complex with spiro-isoxazol based compound 8a
Descriptor: (5~{S})-3-(2-chlorophenyl)-1-oxa-2,9-diazaspiro[4.5]dec-2-ene-8,10-dione, Cereblon isoform 4, PHOSPHATE ION, ...
Authors:Bischof, L, Hartmann, M.D.
Deposit date:2023-12-08
Release date:2024-04-10
Method:X-RAY DIFFRACTION (1.76 Å)
Cite:Discovery and characterization of potent spiro-isoxazole-based cereblon ligands with a novel binding mode.
Eur.J.Med.Chem., 270, 2024
7R2Y
DownloadVisualize
BU of 7r2y by Molmil
Carbon regulatory PII-like protein SbtB from Synechocystis sp. 6803 in complex with ATP resulting from short ATP soak, conflicting T-loop and C-loop with partial occupancy
Descriptor: ADENOSINE-5'-TRIPHOSPHATE, Membrane-associated protein slr1513, SODIUM ION
Authors:Selim, K.A, Albrecht, R, Hartmann, M.D.
Deposit date:2022-02-06
Release date:2023-02-15
Last modified:2024-11-06
Method:X-RAY DIFFRACTION (2.15 Å)
Cite:Carbon signaling protein SbtB possesses atypical redox-regulated apyrase activity to facilitate regulation of bicarbonate transporter SbtA.
Proc.Natl.Acad.Sci.USA, 120, 2023
7R30
DownloadVisualize
BU of 7r30 by Molmil
Carbon regulatory PII-like protein SbtB from Synechocystis sp. 6803 in complex with ADP and AMP resulting from ADP soak
Descriptor: ADENOSINE-5'-DIPHOSPHATE, BICARBONATE ION, HEXAETHYLENE GLYCOL, ...
Authors:Selim, K.A, Albrecht, R, Hartmann, M.D.
Deposit date:2022-02-06
Release date:2023-02-15
Last modified:2024-11-06
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:Carbon signaling protein SbtB possesses atypical redox-regulated apyrase activity to facilitate regulation of bicarbonate transporter SbtA.
Proc.Natl.Acad.Sci.USA, 120, 2023
7R2Z
DownloadVisualize
BU of 7r2z by Molmil
Carbon regulatory PII-like protein SbtB from Synechocystis sp. 6803 in complex with ATP and ADP resulting from long ATP soak
Descriptor: ADENOSINE-5'-DIPHOSPHATE, ADENOSINE-5'-TRIPHOSPHATE, Membrane-associated protein slr1513
Authors:Selim, K.A, Albrecht, R, Hartmann, M.D.
Deposit date:2022-02-06
Release date:2023-02-15
Last modified:2024-10-16
Method:X-RAY DIFFRACTION (2.4 Å)
Cite:Carbon signaling protein SbtB possesses atypical redox-regulated apyrase activity to facilitate regulation of bicarbonate transporter SbtA.
Proc.Natl.Acad.Sci.USA, 120, 2023
7R32
DownloadVisualize
BU of 7r32 by Molmil
Carbon regulatory PII-like protein SbtB from Synechocystis sp. 6803, delta104 variant, in complex with ADP (co-crystal), tetragonal crystal form
Descriptor: ADENOSINE-5'-DIPHOSPHATE, Membrane-associated protein slr1513
Authors:Selim, K.A, Albrecht, R, Hartmann, M.D.
Deposit date:2022-02-06
Release date:2023-02-15
Last modified:2024-02-07
Method:X-RAY DIFFRACTION (1.75 Å)
Cite:Carbon signaling protein SbtB possesses atypical redox-regulated apyrase activity to facilitate regulation of bicarbonate transporter SbtA.
Proc.Natl.Acad.Sci.USA, 120, 2023
7R31
DownloadVisualize
BU of 7r31 by Molmil
Carbon regulatory PII-like protein SbtB from Synechocystis sp. 6803, C105A+C110A variant, in complex with ATP (co-crystal), tetragonal crystal form
Descriptor: ADENOSINE-5'-TRIPHOSPHATE, CHLORIDE ION, Membrane-associated protein slr1513, ...
Authors:Selim, K.A, Albrecht, R, Hartmann, M.D.
Deposit date:2022-02-06
Release date:2023-02-15
Last modified:2024-02-07
Method:X-RAY DIFFRACTION (1.52 Å)
Cite:Carbon signaling protein SbtB possesses atypical redox-regulated apyrase activity to facilitate regulation of bicarbonate transporter SbtA.
Proc.Natl.Acad.Sci.USA, 120, 2023
2VC8
DownloadVisualize
BU of 2vc8 by Molmil
Crystal structure of the LSm domain of human EDC3 (enhancer of decapping 3)
Descriptor: ENHANCER OF MRNA-DECAPPING PROTEIN 3
Authors:Tritschler, F, Hartmann, M.D, Weichenrieder, O.
Deposit date:2007-09-19
Release date:2007-10-16
Last modified:2024-05-08
Method:X-RAY DIFFRACTION (1.31 Å)
Cite:A Divergent Sm Fold in Edc3 Proteins Mediates Dcp1 Binding and P-Body Targeting.
Mol.Cell.Biol., 27, 2007
8C3H
DownloadVisualize
BU of 8c3h by Molmil
Cereblon isoform 4 from Magnetospirillum gryphiswaldense in complex a long aspartimide degron peptide
Descriptor: Cereblon isoform 4, P3(40), ZINC ION
Authors:Heim, C, Spring, A.K, Hartmann, M.D.
Deposit date:2022-12-23
Release date:2023-02-08
Last modified:2024-11-13
Method:X-RAY DIFFRACTION (1.71 Å)
Cite:Cereblon neo-substrate binding mimics the recognition of the cyclic imide degron.
Biochem.Biophys.Res.Commun., 646, 2023

238582

PDB entries from 2025-07-09

PDB statisticsPDBj update infoContact PDBjnumon