Loading
PDBj
MenuPDBj@FacebookPDBj@TwitterPDBj@YouTubewwPDB FoundationwwPDB
RCSB PDBPDBeBMRBAdv. SearchSearch help
Search by PDB author
1BMN
DownloadVisualize
BU of 1bmn by Molmil
HUMAN ALPHA-THROMBIN COMPLEXED WITH [S-(R*,R*)]-1-(AMINOIMINOMETHYL)-N-[[1-[N-[(2-NAPHTHALENYLSULFONYL)-L-SERYL]-PYRROLIDINYL]METHYL]-3-PIPERIDENECARBOXAMIDE (BMS-189090)
Descriptor: ALPHA-THROMBIN, HIRUDIN I, [S-(R*,R*)]-1-(AMINOIMINOMETHYL)-N-[[1-[N-[(2-NAPHTHALENYLSULFONYL)-L-SERYL]-3-PYRROLIDINYL]METHYL]-3-PIPERIDENECARBOXAMIDE
Authors:Malley, M, Sack, J.
Deposit date:1995-11-14
Release date:1996-12-07
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.8 Å)
Cite:Crystallographic determination of the structures of human alpha-thrombin complexed with BMS-186282 and BMS-189090.
Protein Sci., 5, 1996
1BMM
DownloadVisualize
BU of 1bmm by Molmil
HUMAN ALPHA-THROMBIN COMPLEXED WITH [S-(R*,R*)]-4-[(AMINOIMINOMETHYL)AMINO]-N-[[1-[3-HYDROXY-2-[(2-NAPHTHALENYLSULFONYL)AMINO]-1-OXOPROPYL]-2-PYRROLIDINYL] METHYL]BUTANAMIDE (BMS-186282)
Descriptor: ALPHA-THROMBIN, HIRUDIN I, S-(R*,R*)]-4-[AMINOIMINOMETHYL)AMINO]-N-[[1-[3-HYDROXY -2-[(2-NAPHTHALENYLSULFONYL)AMINO]-1-OXOPROPYL]-2-PYRROLIDINYL] METHYL]BUTANAMIDE
Authors:Malley, M, Sack, J.
Deposit date:1995-11-14
Release date:1996-12-07
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.6 Å)
Cite:Crystallographic determination of the structures of human alpha-thrombin complexed with BMS-186282 and BMS-189090.
Protein Sci., 5, 1996
2BYV
DownloadVisualize
BU of 2byv by Molmil
Structure of the cAMP responsive exchange factor Epac2 in its auto- inhibited state
Descriptor: RAP GUANINE NUCLEOTIDE EXCHANGE FACTOR 4
Authors:Rehmann, H, Wittinghofer, A, Bos, J.L.
Deposit date:2005-08-08
Release date:2006-02-02
Last modified:2023-12-13
Method:X-RAY DIFFRACTION (2.7 Å)
Cite:Structure of the Cyclic-AMP Responsive Exchange Factor Epac2 in its Auto-Inhibited State
Nature, 439, 2006
3CF6
DownloadVisualize
BU of 3cf6 by Molmil
Structure of Epac2 in complex with cyclic-AMP and Rap
Descriptor: 6-(6-AMINO-PURIN-9-YL)-2-THIOXO-TETRAHYDRO-2-FURO[3,2-D][1,3,2]DIOXAPHOSPHININE-2,7-DIOL, Rap guanine nucleotide exchange factor (GEF) 4, Ras-related protein Rap-1b, ...
Authors:Rehmann, H, Arias-Palomo, E, Hadders, M.A, Schwede, F, Llorca, O, Bos, J.L.
Deposit date:2008-03-02
Release date:2008-07-29
Last modified:2023-11-01
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:Structure of Epac2 in complex with a cyclic AMP analogue and RAP1B
Nature, 455, 2008
3UEJ
DownloadVisualize
BU of 3uej by Molmil
Structural and functional characterization of an anesthetic binding site in the second cysteine-rich domain of protein kinase Cdelta
Descriptor: PHOSPHATE ION, Protein kinase C delta type, ZINC ION
Authors:Shanmugasundararaj, S, Stehle, T, Miller, K.W.
Deposit date:2011-10-30
Release date:2012-12-12
Last modified:2023-09-13
Method:X-RAY DIFFRACTION (1.301 Å)
Cite:Structural and Functional Characterization of an Anesthetic Binding Site in the Second Cysteine-Rich Domain of Protein Kinase Cdelta
Biophys.J., 103, 2012
3UGL
DownloadVisualize
BU of 3ugl by Molmil
Structural and functional characterization of an anesthetic binding site in the second cysteine-rich domain of protein kinase C delta
Descriptor: PHOSPHATE ION, Proteine kinase C delta type, ZINC ION, ...
Authors:Shanmugasundararaj, S, Stehle, T, Miller, K.W.
Deposit date:2011-11-02
Release date:2012-12-12
Last modified:2023-09-13
Method:X-RAY DIFFRACTION (1.357 Å)
Cite:Structural and Functional Characterization of an Anesthetic Binding Site in the Second Cysteine-Rich Domain of Protein Kinase Cdelta
Biophys.J., 103, 2012
3UFF
DownloadVisualize
BU of 3uff by Molmil
Structural and functional characterization of an anesthetic binding site in the second cysteine-rich domain of protein kinase Cdelta
Descriptor: PHOSPHATE ION, Protein kinase C delta type, ZINC ION
Authors:Shanmugasundararaj, S, Stehle, T, Miller, K.W.
Deposit date:2011-11-01
Release date:2012-12-12
Last modified:2023-09-13
Method:X-RAY DIFFRACTION (1.3 Å)
Cite:Structural and functional characterization of an anesthetic binding site in the second cysteine-rich domain of protein kinase C delta
Biophys.J., 103, 2012
3UGI
DownloadVisualize
BU of 3ugi by Molmil
Structural and functional characterization of an anesthetic binding site in the second cysteine-rich domain of protein kinase C delta
Descriptor: (methoxymethyl)cyclopropane, PHOSPHATE ION, Protein kinase C delta type, ...
Authors:Shanmugasundararaj, S, Stehle, T, Miller, K.W.
Deposit date:2011-11-02
Release date:2012-12-12
Last modified:2023-09-13
Method:X-RAY DIFFRACTION (1.361 Å)
Cite:Structural and Functional Characterization of an Anesthetic Binding Site in the Second Cysteine-Rich Domain of Protein Kinase Cdelta
Biophys.J., 103, 2012
3UEY
DownloadVisualize
BU of 3uey by Molmil
Structural and functional characterization of an anesthetic binding site in the second cysteine-rich domain of protein kinase Cdelta
Descriptor: PHOSPHATE ION, Protein kinase C delta type, ZINC ION
Authors:Shanmugasundararaj, S, Stehle, T, Miller, K.W.
Deposit date:2011-10-31
Release date:2012-12-12
Last modified:2023-09-13
Method:X-RAY DIFFRACTION (1.301 Å)
Cite:Structural and Functional Characterization of an Anesthetic Binding Site in the Second Cysteine-Rich Domain of Protein Kinase Cdelta
Biophys.J., 103, 2012
3UGD
DownloadVisualize
BU of 3ugd by Molmil
Structural and functional characterization of an anesthetic binding site in the second cysteine-rich domain of protein kinase C delta
Descriptor: 1,2-ETHANEDIOL, PHOSPHATE ION, Protein kinase C delta type, ...
Authors:Shanmugasundararaj, S, Stehle, T, Miller, K.W.
Deposit date:2011-11-02
Release date:2012-12-12
Last modified:2023-09-13
Method:X-RAY DIFFRACTION (1.45 Å)
Cite:Structural and functional characterization of an anesthetic binding site in the second cysteine-rich domain of protein kinase C delta
Biophys.J., 103, 2012
6NPU
DownloadVisualize
BU of 6npu by Molmil
C-abl Kinase domain with the activator(cmpd29), N-(1-(3,4-dichlorophenyl)-4,5-dihydro-1H-pyrazol-3-yl)acetamide
Descriptor: 4-(4-METHYL-PIPERAZIN-1-YLMETHYL)-N-[4-METHYL-3-(4-PYRIDIN-3-YL-PYRIMIDIN-2-YLAMINO)-PHENYL]-BENZAMIDE, GLYCEROL, NONAETHYLENE GLYCOL, ...
Authors:Campobasso, N.
Deposit date:2019-01-18
Release date:2019-03-13
Last modified:2024-03-13
Method:X-RAY DIFFRACTION (2.33 Å)
Cite:Identification and Optimization of Novel Small c-Abl Kinase Activators Using Fragment and HTS Methodologies.
J. Med. Chem., 62, 2019
6NPE
DownloadVisualize
BU of 6npe by Molmil
C-abl Kinase domain with the activator(cmpd6), 2-cyano-N-(4-(3,4-dichlorophenyl)thiazol-2-yl)acetamide
Descriptor: 2-cyano-~{N}-[4-(3,4-dichlorophenyl)-1,3-thiazol-2-yl]ethanamide, 4-(4-METHYL-PIPERAZIN-1-YLMETHYL)-N-[4-METHYL-3-(4-PYRIDIN-3-YL-PYRIMIDIN-2-YLAMINO)-PHENYL]-BENZAMIDE, NONAETHYLENE GLYCOL, ...
Authors:campobasso, N.
Deposit date:2019-01-17
Release date:2019-03-13
Last modified:2024-03-13
Method:X-RAY DIFFRACTION (2.15 Å)
Cite:Identification and Optimization of Novel Small c-Abl Kinase Activators Using Fragment and HTS Methodologies.
J. Med. Chem., 62, 2019
6NPV
DownloadVisualize
BU of 6npv by Molmil
C-abl Kinase domain with the activator(cmpd51), N-(1-(3,4-dichlorophenyl)-4-(2-hydroxyethyl)-4,5-dihydro-1H-pyrazol-3-yl)isonicotinamide
Descriptor: 4-(4-METHYL-PIPERAZIN-1-YLMETHYL)-N-[4-METHYL-3-(4-PYRIDIN-3-YL-PYRIMIDIN-2-YLAMINO)-PHENYL]-BENZAMIDE, GLYCEROL, NONAETHYLENE GLYCOL, ...
Authors:campobasso, N.
Deposit date:2019-01-18
Release date:2019-03-13
Last modified:2024-03-13
Method:X-RAY DIFFRACTION (1.86 Å)
Cite:Identification and Optimization of Novel Small c-Abl Kinase Activators Using Fragment and HTS Methodologies.
J. Med. Chem., 62, 2019
8QB7
DownloadVisualize
BU of 8qb7 by Molmil
Pil1 in native eisosome lattice bound to plasma membrane microdomain
Descriptor: Sphingolipid long chain base-responsive protein PIL1
Authors:Kefauver, J.M, Zou, L, Loewith, R.J, Defosses, A.
Deposit date:2023-08-24
Release date:2024-07-24
Last modified:2024-08-28
Method:ELECTRON MICROSCOPY (3.2 Å)
Cite:Cryo-EM architecture of a near-native stretch-sensitive membrane microdomain.
Nature, 632, 2024
8QBD
DownloadVisualize
BU of 8qbd by Molmil
Helical reconstruction of yeast eisosome protein Pil1 bound to membrane composed of lipid mixture +PIP2/+sterol (DOPC, DOPE, DOPS, cholesterol, PI(4,5)P2 35:20:20:15:10)
Descriptor: D-MYO-INOSITOL-1,4,5-TRIPHOSPHATE, O-[(R)-{[(2R)-2,3-bis(octadecanoyloxy)propyl]oxy}(hydroxy)phosphoryl]-L-serine, Sphingolipid long chain base-responsive protein PIL1
Authors:Kefauver, J.M, Zou, L, Desfosses, A, Loewith, R.J.
Deposit date:2023-08-24
Release date:2024-07-24
Last modified:2024-08-28
Method:ELECTRON MICROSCOPY (3.61 Å)
Cite:Cryo-EM architecture of a near-native stretch-sensitive membrane microdomain.
Nature, 632, 2024
8QBF
DownloadVisualize
BU of 8qbf by Molmil
Compact state - Pil1 dimer with lipid headgroups fitted in native eisosome lattice bound to plasma membrane microdomain
Descriptor: D-MYO-INOSITOL-1,4,5-TRIPHOSPHATE, PHOSPHOSERINE, Sphingolipid long chain base-responsive protein PIL1
Authors:Kefauver, J.M, Zou, L, Desfosses, A, Loewith, R.J.
Deposit date:2023-08-24
Release date:2024-07-24
Last modified:2024-08-28
Method:ELECTRON MICROSCOPY (3.67 Å)
Cite:Cryo-EM architecture of a near-native stretch-sensitive membrane microdomain.
Nature, 632, 2024
8QBG
DownloadVisualize
BU of 8qbg by Molmil
Stretched state - Pil1 in native eisosome lattice bound to plasma membrane microdomain
Descriptor: Sphingolipid long chain base-responsive protein PIL1
Authors:Kefauver, J.M, Zou, L, Desfosses, A, Loewith, R.J.
Deposit date:2023-08-24
Release date:2024-07-24
Last modified:2024-08-28
Method:ELECTRON MICROSCOPY (3.64 Å)
Cite:Cryo-EM architecture of a near-native stretch-sensitive membrane microdomain.
Nature, 632, 2024
8QBE
DownloadVisualize
BU of 8qbe by Molmil
Compact state - Pil1 in native eisosome lattice bound to plasma membrane microdomain
Descriptor: Sphingolipid long chain base-responsive protein PIL1
Authors:Kefauver, J.M, Zou, L, Desfosses, A, Loewith, R.J.
Deposit date:2023-08-24
Release date:2024-07-24
Last modified:2024-08-28
Method:ELECTRON MICROSCOPY (3.67 Å)
Cite:Cryo-EM architecture of a near-native stretch-sensitive membrane microdomain.
Nature, 632, 2024
8QB9
DownloadVisualize
BU of 8qb9 by Molmil
Helical reconstruction of yeast eisosome protein Pil1 bound to membrane composed of lipid mixture -PIP2/+sterol (DOPC, DOPE, DOPS, cholesterol 30:20:20:30)
Descriptor: Sphingolipid long chain base-responsive protein PIL1
Authors:Kefauver, J.M, Zou, L, Desfosses, A, Loewith, R.J.
Deposit date:2023-08-24
Release date:2024-07-24
Last modified:2024-08-28
Method:ELECTRON MICROSCOPY (3.35 Å)
Cite:Cryo-EM architecture of a near-native stretch-sensitive membrane microdomain.
Nature, 632, 2024
8QB8
DownloadVisualize
BU of 8qb8 by Molmil
Lsp1 in native eisosome lattice bound to plasma membrane microdomain
Descriptor: Sphingolipid long chain base-responsive protein LSP1
Authors:Kefauver, J.M, Zou, L, Loewith, R.J, Defosses, A.
Deposit date:2023-08-24
Release date:2024-07-24
Last modified:2024-08-28
Method:ELECTRON MICROSCOPY (3.2 Å)
Cite:Cryo-EM architecture of a near-native stretch-sensitive membrane microdomain.
Nature, 632, 2024
8QBB
DownloadVisualize
BU of 8qbb by Molmil
Helical reconstruction of yeast eisosome protein Pil1 bound to membrane composed of lipid mixture +PIP2/-sterol (DOPC, DOPE, DOPS, PI(4,5)P2 50:20:20:10)
Descriptor: D-MYO-INOSITOL-1,4,5-TRIPHOSPHATE, Sphingolipid long chain base-responsive protein PIL1
Authors:Kefauver, J.M, Zou, L, Desfosses, A, Loewith, R.J.
Deposit date:2023-08-24
Release date:2024-07-24
Last modified:2024-08-28
Method:ELECTRON MICROSCOPY (3.86 Å)
Cite:Cryo-EM architecture of a near-native stretch-sensitive membrane microdomain.
Nature, 632, 2024
8QBR
DownloadVisualize
BU of 8qbr by Molmil
Cryo-EM structure of Vipp1 helical filament with lattice 1 (Vipp1_L1)
Descriptor: Membrane-associated protein Vipp1
Authors:Naskar, S, Low, H.H.
Deposit date:2023-08-25
Release date:2024-09-18
Method:ELECTRON MICROSCOPY (3.74 Å)
Cite:Mechanism for Vipp1 spiral formation, ring biogenesis and membrane repair.
To Be Published
8QBS
DownloadVisualize
BU of 8qbs by Molmil
Cryo-EM structure of Vipp1-F197K/L200K helical filament with lattice 1 (Vipp1-F197K/L200K_L1)
Descriptor: Phage shock protein A, PspA
Authors:Naskar, S, Low, H.H.
Deposit date:2023-08-25
Release date:2024-09-11
Method:ELECTRON MICROSCOPY (3.67 Å)
Cite:Mechanism for Vipp1 spiral formation, ring biogenesis and membrane repair.
To Be Published
8QBW
DownloadVisualize
BU of 8qbw by Molmil
Cryo-EM structure of Vipp1-deltaH6_aa1-219 helical filament with lattice 3 (Vipp1-deltaH6_L3)
Descriptor: Phage shock protein A, PspA
Authors:Naskar, S, Low, H.H.
Deposit date:2023-08-25
Release date:2024-09-11
Method:ELECTRON MICROSCOPY (3.67 Å)
Cite:Mechanism for Vipp1 spiral formation, ring biogenesis and membrane repair.
To Be Published
8QBV
DownloadVisualize
BU of 8qbv by Molmil
Cryo-EM structure of Vipp1-deltaH6_aa1-219 helical filament with lattice 2 (Vipp1-deltaH6_L2)
Descriptor: Membrane-associated protein Vipp1
Authors:Naskar, S, Low, H.H.
Deposit date:2023-08-25
Release date:2024-09-18
Method:ELECTRON MICROSCOPY (3.78 Å)
Cite:Mechanism for Vipp1 spiral formation, ring biogenesis and membrane repair.
To Be Published

225946

PDB entries from 2024-10-09

PDB statisticsPDBj update infoContact PDBjnumon