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5JGF
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BU of 5jgf by Molmil
Crystal structure of mApe1
Descriptor: Vacuolar aminopeptidase 1, ZINC ION
Authors:Noda, N.N, Adachi, W, Inagaki, F.
Deposit date:2016-04-20
Release date:2016-06-29
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (1.83 Å)
Cite:Structural Basis for Receptor-Mediated Selective Autophagy of Aminopeptidase I Aggregates
Cell Rep, 16, 2016
5JHC
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BU of 5jhc by Molmil
Crystal structure of the self-assembled propeptides from Ape1
Descriptor: Vacuolar aminopeptidase 1
Authors:Yamasaki, A, Noda, N.N.
Deposit date:2016-04-20
Release date:2016-06-29
Last modified:2024-03-20
Method:X-RAY DIFFRACTION (3.4 Å)
Cite:Structural Basis for Receptor-Mediated Selective Autophagy of Aminopeptidase I Aggregates
Cell Rep, 16, 2016
1JVA
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BU of 1jva by Molmil
CRYSTAL STRUCTURE OF THE VMA1-DERIVED ENDONUCLEASE BEARING THE N AND C EXTEIN PROPEPTIDES
Descriptor: VMA1-DERIVED HOMING ENDONUCLEASE X10SSS
Authors:Mizutani, R, Satow, Y.
Deposit date:2001-08-29
Release date:2002-08-29
Last modified:2023-10-25
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:Protein-splicing reaction via a thiazolidine intermediate: crystal structure of the VMA1-derived endonuclease bearing the N and C-terminal propeptides.
J.Mol.Biol., 316, 2002
3A7P
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BU of 3a7p by Molmil
The crystal structure of Saccharomyces cerevisiae Atg16
Descriptor: Autophagy protein 16
Authors:Fujioka, Y, Noda, N.N, Inagaki, F.
Deposit date:2009-10-01
Release date:2009-11-03
Last modified:2023-11-01
Method:X-RAY DIFFRACTION (2.8 Å)
Cite:Dimeric coiled-coil structure of Saccharomyces cerevisiae Atg16 and its functional significance in autophagy.
J.Biol.Chem., 285, 2010
3A7O
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BU of 3a7o by Molmil
The crystal structure of the coiled-coil domain of Saccharomyces cerevisiae Atg16
Descriptor: Autophagy protein 16
Authors:Fujioka, Y, Noda, N.N, Inagaki, F.
Deposit date:2009-10-01
Release date:2009-11-03
Last modified:2023-10-18
Method:X-RAY DIFFRACTION (2.5 Å)
Cite:Dimeric coiled-coil structure of Saccharomyces cerevisiae Atg16 and its functional significance in autophagy.
J.Biol.Chem., 285, 2010
2Z0D
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BU of 2z0d by Molmil
The crystal structure of human Atg4B- LC3(1-120) complex
Descriptor: Cysteine protease ATG4B, Microtubule-associated proteins 1A/1B light chain 3B
Authors:Satoo, K, Noda, N.N, Inagaki, F.
Deposit date:2007-05-07
Release date:2007-05-22
Last modified:2023-11-01
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:The structure of Atg4B-LC3 complex reveals the mechanism of LC3 processing and delipidation during autophagy.
Embo J., 28, 2009
2Z0E
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BU of 2z0e by Molmil
The crystal structure of human Atg4B- LC3(1-124) complex
Descriptor: Cysteine protease ATG4B, Microtubule-associated proteins 1A/1B light chain 3B
Authors:Satoo, K, Noda, N.N, Inagaki, F.
Deposit date:2007-05-07
Release date:2007-05-22
Last modified:2023-11-01
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:The structure of Atg4B-LC3 complex reveals the mechanism of LC3 processing and delipidation during autophagy.
Embo J., 28, 2009
2ZPN
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BU of 2zpn by Molmil
The crystal structure of Saccharomyces cerevisiae Atg8- Atg19(412-415) complex
Descriptor: Autophagy-related protein 8, SULFATE ION, Saccharomyces cerevisiae Atg19(412-415)
Authors:Noda, N.N, Inagaki, F.
Deposit date:2008-07-17
Release date:2008-12-09
Last modified:2023-11-01
Method:X-RAY DIFFRACTION (2.7 Å)
Cite:Structural basis of target recognition by Atg8/LC3 during selective autophagy
Genes Cells, 13, 2008
5YEC
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BU of 5yec by Molmil
Crystal structure of Atg7CTD-Atg8-MgATP complex in form II
Descriptor: ADENOSINE-5'-TRIPHOSPHATE, Autophagy-related protein 8, MAGNESIUM ION, ...
Authors:Yamaguchi, M, Satoo, K, Noda, N.N.
Deposit date:2017-09-16
Release date:2018-03-28
Last modified:2024-03-27
Method:X-RAY DIFFRACTION (2.147 Å)
Cite:Atg7 Activates an Autophagy-Essential Ubiquitin-like Protein Atg8 through Multi-Step Recognition.
J. Mol. Biol., 430, 2018
2ZZP
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BU of 2zzp by Molmil
The crystal structure of human Atg4B(C74S)- LC3(1-124) complex
Descriptor: Cysteine protease ATG4B, Microtubule-associated proteins 1A/1B light chain 3B
Authors:Satoo, K, Noda, N.N, Inagaki, F.
Deposit date:2009-02-22
Release date:2009-03-03
Last modified:2023-11-01
Method:X-RAY DIFFRACTION (2.05 Å)
Cite:The structure of Atg4B-LC3 complex reveals the mechanism of LC3 processing and delipidation during autophagy.
Embo J., 28, 2009
2P82
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BU of 2p82 by Molmil
Cysteine protease ATG4A
Descriptor: 1,2-ETHANEDIOL, CHLORIDE ION, Cysteine protease ATG4A
Authors:Walker, J.R, Davis, T, Mujib, S, Butler-Cole, C, Finerty Jr, P.J, Weigelt, J, Sundstrom, M, Arrowsmith, C.H, Edwards, A.M, Bochkarev, A, Dhe-Paganon, S, Structural Genomics Consortium (SGC)
Deposit date:2007-03-21
Release date:2007-04-10
Last modified:2023-08-30
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:Human cysteine protease ATG4A
To be Published
6AAG
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BU of 6aag by Molmil
Crystal structure of budding yeast Atg8 complexed with the helical AIM of Hfl1.
Descriptor: Transmembrane protein 184 homolog YKR051W,Autophagy-related protein 8
Authors:Yamasaki, A, Noda, N.N.
Deposit date:2018-07-18
Release date:2018-12-12
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (2.445 Å)
Cite:Lipidation-independent vacuolar functions of Atg8 rely on its noncanonical interaction with a vacuole membrane protein
Elife, 7, 2018
6AAF
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BU of 6aaf by Molmil
Crystal structure of fission yeast Atg8 complexed with the helical AIM of Hfl1.
Descriptor: Autophagy-related protein 8, Transmembrane protein 184 homolog C30D11.06c
Authors:Yamasaki, A, Noda, N.N.
Deposit date:2018-07-18
Release date:2018-12-12
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (2.197 Å)
Cite:Lipidation-independent vacuolar functions of Atg8 rely on its noncanonical interaction with a vacuole membrane protein
Elife, 7, 2018
6A9E
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BU of 6a9e by Molmil
Crystal structure of the N-terminal domain of Atg2
Descriptor: Endolysin,Autophagy-related protein 2
Authors:Osawa, T, Noda, N.N.
Deposit date:2018-07-13
Release date:2019-03-20
Last modified:2024-10-09
Method:X-RAY DIFFRACTION (3.205 Å)
Cite:Atg2 mediates direct lipid transfer between membranes for autophagosome formation.
Nat. Struct. Mol. Biol., 26, 2019
3VU4
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BU of 3vu4 by Molmil
Crystal structure of Kluyvelomyces marxianus Hsv2
Descriptor: KmHsv2, SULFATE ION
Authors:Watanabe, Y, Noda, N.N.
Deposit date:2012-06-15
Release date:2012-07-04
Last modified:2024-03-20
Method:X-RAY DIFFRACTION (2.6 Å)
Cite:Structure-based analyses reveal distinct binding sites for Atg2 and phosphoinositides in Atg18.
J.Biol.Chem., 287, 2012
3VH2
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BU of 3vh2 by Molmil
Crystal structure of Saccharomyces cerevisiae Atg7 (1-613)
Descriptor: Ubiquitin-like modifier-activating enzyme ATG7, ZINC ION
Authors:Noda, N.N, Satoo, K, Inagaki, F.
Deposit date:2011-08-23
Release date:2011-09-21
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (3.3 Å)
Cite:Structural basis of Atg8 activation by a homodimeric E1, Atg7.
Mol.Cell, 44, 2011
3VH1
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BU of 3vh1 by Molmil
Crystal structure of Saccharomyces cerevisiae Atg7 (1-595)
Descriptor: Ubiquitin-like modifier-activating enzyme ATG7, ZINC ION
Authors:Noda, N.N, Satoo, K, Inagaki, F.
Deposit date:2011-08-23
Release date:2011-09-21
Last modified:2024-03-20
Method:X-RAY DIFFRACTION (3 Å)
Cite:Structural basis of Atg8 activation by a homodimeric E1, Atg7.
Mol.Cell, 44, 2011
3VH4
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BU of 3vh4 by Molmil
Crystal structure of Atg7CTD-Atg8-MgATP complex
Descriptor: ADENOSINE-5'-TRIPHOSPHATE, Autophagy-related protein 8, MAGNESIUM ION, ...
Authors:Noda, N.N, Satoo, K, Inagaki, F.
Deposit date:2011-08-23
Release date:2011-09-21
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (2.65 Å)
Cite:Structural basis of Atg8 activation by a homodimeric E1, Atg7.
Mol.Cell, 44, 2011
3VH3
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BU of 3vh3 by Molmil
Crystal structure of Atg7CTD-Atg8 complex
Descriptor: Autophagy-related protein 8, Ubiquitin-like modifier-activating enzyme ATG7, ZINC ION
Authors:Noda, N.N, Satoo, K, Inagaki, F.
Deposit date:2011-08-23
Release date:2011-09-21
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (2 Å)
Cite:Structural basis of Atg8 activation by a homodimeric E1, Atg7.
Mol.Cell, 44, 2011
3VXW
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BU of 3vxw by Molmil
Crystal structure of Saccharomyces cerevisiae Atg8 complexed with Atg32 AIM
Descriptor: Autophagy-related protein 8, Peptide from Autophagy-related protein 32, SULFATE ION
Authors:Noda, N.N, Inagaki, F.
Deposit date:2012-09-21
Release date:2012-10-03
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (3 Å)
Cite:Autophagy-related protein 32 acts as autophagic degron and directly initiates mitophagy
J.Biol.Chem., 287, 2012
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PDB entries from 2024-10-09

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