Loading
PDBj
MenuPDBj@FacebookPDBj@TwitterPDBj@YouTubewwPDB FoundationwwPDB
RCSB PDBPDBeBMRBAdv. SearchSearch help
Search by PDB author
6BEI
DownloadVisualize
BU of 6bei by Molmil
Crystal structure of VACV D13 in its apo (unbound) form
Descriptor: 1,2-ETHANEDIOL, FORMIC ACID, Scaffold protein D13
Authors:Garriga, D, Accurso, C, Coulibaly, F.
Deposit date:2017-10-25
Release date:2018-07-18
Last modified:2023-10-04
Method:X-RAY DIFFRACTION (2.81 Å)
Cite:Structural basis for the inhibition of poxvirus assembly by the antibiotic rifampicin.
Proc. Natl. Acad. Sci. U.S.A., 115, 2018
5YRB
DownloadVisualize
BU of 5yrb by Molmil
Crystal Structure of Oxidized Cypovirus Polyhedra R13A/E73C/Y83C/S193C/A194C Mutant
Descriptor: 1,2-ETHANEDIOL, Polyhedrin
Authors:Negishi, H, Abe, S, Yamashita, K, Hirata, K, Niwase, K, Boudes, M, Coulibaly, F, Mori, H, Ueno, T.
Deposit date:2017-11-09
Release date:2018-02-21
Last modified:2018-03-07
Method:X-RAY DIFFRACTION (1.65 Å)
Cite:Supramolecular protein cages constructed from a crystalline protein matrix
Chem. Commun. (Camb.), 54, 2018
5YRA
DownloadVisualize
BU of 5yra by Molmil
Crystal Structure of Cypovirus Polyhedra R13A/S193C/A194C Mutant
Descriptor: 1,2-ETHANEDIOL, Polyhedrin
Authors:Negishi, H, Abe, S, Yamashita, K, Hirata, K, Niwase, K, Boudes, M, Coulibaly, F, Mori, H, Ueno, T.
Deposit date:2017-11-09
Release date:2018-02-21
Last modified:2024-03-27
Method:X-RAY DIFFRACTION (1.79 Å)
Cite:Supramolecular protein cages constructed from a crystalline protein matrix
Chem. Commun. (Camb.), 54, 2018
5YRC
DownloadVisualize
BU of 5yrc by Molmil
Crystal Structure of Oxidized Cypovirus Polyhedra R13A/E73C/Y83C Mutant
Descriptor: 1,2-ETHANEDIOL, Polyhedrin
Authors:Negishi, H, Abe, S, Yamashita, K, Hirata, K, Niwase, K, Boudes, M, Coulibaly, F, Mori, H, Ueno, T.
Deposit date:2017-11-09
Release date:2018-02-21
Last modified:2024-10-16
Method:X-RAY DIFFRACTION (1.67 Å)
Cite:Supramolecular protein cages constructed from a crystalline protein matrix
Chem. Commun. (Camb.), 54, 2018
5YR9
DownloadVisualize
BU of 5yr9 by Molmil
Crystal Structure of Cypovirus Polyhedra R13A/E73C/Y83C Mutant
Descriptor: 1,2-ETHANEDIOL, Polyhedrin
Authors:Negishi, H, Abe, S, Yamashita, K, Hirata, K, Niwase, K, Boudes, M, Coulibaly, F, Mori, H, Ueno, T.
Deposit date:2017-11-08
Release date:2018-02-21
Last modified:2018-03-07
Method:X-RAY DIFFRACTION (1.7 Å)
Cite:Supramolecular protein cages constructed from a crystalline protein matrix
Chem. Commun. (Camb.), 54, 2018
5YR1
DownloadVisualize
BU of 5yr1 by Molmil
Crystal Structure of Cypovirus Polyhedra R13A/E73C/Y83C/S193C/A194C Mutant
Descriptor: 1,2-ETHANEDIOL, Polyhedrin
Authors:Negishi, H, Abe, S, Yamashita, K, Hirata, K, Niwase, K, Boudes, M, Coulibaly, F, Mori, H, Ueno, T.
Deposit date:2017-11-08
Release date:2018-02-21
Last modified:2024-10-16
Method:X-RAY DIFFRACTION (1.72 Å)
Cite:Supramolecular protein cages constructed from a crystalline protein matrix
Chem. Commun. (Camb.), 54, 2018
5YRD
DownloadVisualize
BU of 5yrd by Molmil
Crystal Structure of Oxidized Cypovirus Polyhedra R13A/S193C/A194C Mutant
Descriptor: 1,2-ETHANEDIOL, Polyhedrin
Authors:Negishi, H, Abe, S, Yamashita, K, Hirata, K, Niwase, K, Boudes, M, Coulibaly, F, Mori, H, Ueno, T.
Deposit date:2017-11-09
Release date:2018-02-21
Last modified:2024-10-30
Method:X-RAY DIFFRACTION (1.85 Å)
Cite:Supramolecular protein cages constructed from a crystalline protein matrix
Chem. Commun. (Camb.), 54, 2018
6BED
DownloadVisualize
BU of 6bed by Molmil
Crystal structure of VACV D13 in complex with Rifampicin
Descriptor: 1,2-ETHANEDIOL, FORMIC ACID, RIFAMPICIN, ...
Authors:Garriga, D, Accurso, C, Coulibaly, F.
Deposit date:2017-10-25
Release date:2018-07-18
Last modified:2023-10-04
Method:X-RAY DIFFRACTION (2.75 Å)
Cite:Structural basis for the inhibition of poxvirus assembly by the antibiotic rifampicin.
Proc. Natl. Acad. Sci. U.S.A., 115, 2018
6BEC
DownloadVisualize
BU of 6bec by Molmil
Crystal structure of VACV D13 in complex with Rifabutin
Descriptor: 1,2-ETHANEDIOL, FORMIC ACID, RIFABUTIN, ...
Authors:Garriga, D, Accurso, C, Coulibaly, F.
Deposit date:2017-10-25
Release date:2018-07-18
Last modified:2023-10-04
Method:X-RAY DIFFRACTION (2.91 Å)
Cite:Structural basis for the inhibition of poxvirus assembly by the antibiotic rifampicin.
Proc. Natl. Acad. Sci. U.S.A., 115, 2018
6BEG
DownloadVisualize
BU of 6beg by Molmil
Crystal structure of VACV D13 F486A mutant
Descriptor: 1,2-ETHANEDIOL, FORMIC ACID, Scaffold protein D13
Authors:Garriga, D, Accurso, C, Coulibaly, F.
Deposit date:2017-10-25
Release date:2018-07-18
Last modified:2023-10-04
Method:X-RAY DIFFRACTION (3.1 Å)
Cite:Structural basis for the inhibition of poxvirus assembly by the antibiotic rifampicin.
Proc. Natl. Acad. Sci. U.S.A., 115, 2018
5VXR
DownloadVisualize
BU of 5vxr by Molmil
The antigen-binding fragment of MAb24 in complex with a peptide from Hepatitis C Virus E2 epitope I (412-423)
Descriptor: GLYCEROL, MAb24 Variable Heavy Chain,MAb24 Variable Heavy Chain, MAb24 Variable Light Chain,MAb24 Variable Light Chain, ...
Authors:Hardy, J.M, Gu, J, Boo, I, Drummer, H.E, Coulibaly, F.J.
Deposit date:2017-05-24
Release date:2018-02-21
Last modified:2023-10-04
Method:X-RAY DIFFRACTION (1.4 Å)
Cite:Escape of Hepatitis C Virus from Epitope I Neutralization Increases Sensitivity of Other Neutralization Epitopes.
J. Virol., 92, 2018
6XGR
DownloadVisualize
BU of 6xgr by Molmil
YSD1 major tail protein
Descriptor: YSD1_22 major tail protein
Authors:Hardy, J.M, Dunstan, R, Venugopal, H, Lithgow, T.J, Coulibaly, F.J.
Deposit date:2020-06-17
Release date:2020-07-01
Last modified:2023-11-29
Method:ELECTRON MICROSCOPY (3.5 Å)
Cite:The architecture and stabilisation of flagellotropic tailed bacteriophages.
Nat Commun, 11, 2020
6XGP
DownloadVisualize
BU of 6xgp by Molmil
YSD1_17 major capsid protein
Descriptor: YSD1_17 major capsid protein
Authors:Grinter, R, Hardy, J.M, Dunstan, R, Lithgow, T.J, Coulibaly, F.J.
Deposit date:2020-06-17
Release date:2020-07-01
Last modified:2023-10-18
Method:X-RAY DIFFRACTION (2.6 Å)
Cite:The architecture and stabilisation of flagellotropic tailed bacteriophages.
Nat Commun, 11, 2020
6XGQ
DownloadVisualize
BU of 6xgq by Molmil
YSD1 bacteriophage capsid
Descriptor: YSD1_16, YSD1_17
Authors:Hardy, J.M, Dunstan, R, Venugopal, H, Lithgow, T.J, Coulibaly, F.J.
Deposit date:2020-06-17
Release date:2020-07-01
Last modified:2024-03-06
Method:ELECTRON MICROSCOPY (3.8 Å)
Cite:The architecture and stabilisation of flagellotropic tailed bacteriophages.
Nat Commun, 11, 2020
5J36
DownloadVisualize
BU of 5j36 by Molmil
Crystal structure of 60-mer BFDV Capsid Protein
Descriptor: Beak and feather disease virus capsid protein, PHOSPHATE ION
Authors:Sarker, S, Raidal, S, Aragao, D, Forwood, J.K.
Deposit date:2016-03-30
Release date:2016-05-04
Last modified:2024-04-03
Method:X-RAY DIFFRACTION (2.55 Å)
Cite:Structural insights into the assembly and regulation of distinct viral capsid complexes.
Nat Commun, 7, 2016
5J09
DownloadVisualize
BU of 5j09 by Molmil
Crystal structure of decameric BFDV Capsid Protein
Descriptor: Beak and feather disease virus capsid protein
Authors:Sarker, S, Raidal, S, Aragao, D, Forwood, J.K.
Deposit date:2016-03-28
Release date:2016-05-04
Last modified:2024-05-22
Method:X-RAY DIFFRACTION (2 Å)
Cite:Structural insights into the assembly and regulation of distinct viral capsid complexes.
Nat Commun, 7, 2016
7KVB
DownloadVisualize
BU of 7kvb by Molmil
Chimeric flavivirus between Binjari virus and Murray Valley encephalitis virus
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, Envelope protein E, Matrix protein M
Authors:Hardy, J.M, Venugopal, H.V, Newton, N.D, Watterson, D, Coulibaly, F.J.
Deposit date:2020-11-27
Release date:2020-12-23
Last modified:2021-07-14
Method:ELECTRON MICROSCOPY (3.7 Å)
Cite:A unified route for flavivirus structures uncovers essential pocket factors conserved across pathogenic viruses.
Nat Commun, 12, 2021
7KV9
DownloadVisualize
BU of 7kv9 by Molmil
Chimeric flavivirus between Binjari virus and West Nile (Kunjin) virus
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, Matrix protein M, envelope protein E
Authors:Hardy, J.M, Venugopal, H.V, Newton, N.D, Watterson, D, Coulibaly, F.J.
Deposit date:2020-11-27
Release date:2020-12-23
Last modified:2021-07-14
Method:ELECTRON MICROSCOPY (2.9 Å)
Cite:A unified route for flavivirus structures uncovers essential pocket factors conserved across pathogenic viruses.
Nat Commun, 12, 2021
7L30
DownloadVisualize
BU of 7l30 by Molmil
Binjari virus (BinJV)
Descriptor: Envelope protein E, prM protein
Authors:Hardy, J.M, Venugopal, H.V, Newton, N.D, Watterson, D, Coulibaly, F.J.
Deposit date:2020-12-17
Release date:2021-03-10
Last modified:2021-05-26
Method:ELECTRON MICROSCOPY (4.4 Å)
Cite:The structure of an infectious immature flavivirus redefines viral architecture and maturation.
Sci Adv, 7, 2021
5J37
DownloadVisualize
BU of 5j37 by Molmil
Crystal structure of 60-mer BFDV Capsid Protein in complex with single stranded DNA
Descriptor: Beak and feather disease virus capsid protein, PHOSPHATE ION, single stranded DNA
Authors:Sarker, S, Raidal, S, Aragao, D, Forwood, J.K.
Deposit date:2016-03-30
Release date:2016-05-04
Last modified:2023-10-25
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:Structural insights into the assembly and regulation of distinct viral capsid complexes.
Nat Commun, 7, 2016
7KV8
DownloadVisualize
BU of 7kv8 by Molmil
Chimeric flavivirus between Binjari virus and Dengue virus serotype-2
Descriptor: (2S,3R,4Z)-3-hydroxy-2-[(9E)-octadec-9-enoylamino]octadec-4-en-1-yl dihydrogen phosphate, 2-acetamido-2-deoxy-beta-D-glucopyranose, Envelope protein E, ...
Authors:Hardy, J.M, Venugopal, H.V, Newton, N.D, Watterson, D, Coulibaly, F.J.
Deposit date:2020-11-27
Release date:2020-12-23
Last modified:2021-11-24
Method:ELECTRON MICROSCOPY (2.5 Å)
Cite:A unified route for flavivirus structures uncovers essential pocket factors conserved across pathogenic viruses.
Nat Commun, 12, 2021
7KVA
DownloadVisualize
BU of 7kva by Molmil
Structure of West Nile virus (Kunjin)
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, Envelope protein E, Matrix protein M
Authors:Hardy, J.M, Venugopal, H.V, Newton, N.D, Watterson, D, Coulibaly, F.J.
Deposit date:2020-11-27
Release date:2020-12-23
Last modified:2024-10-30
Method:ELECTRON MICROSCOPY (3.1 Å)
Cite:A unified route for flavivirus structures uncovers essential pocket factors conserved across pathogenic viruses.
Nat Commun, 12, 2021
3NSJ
DownloadVisualize
BU of 3nsj by Molmil
The X-ray crystal structure of lymphocyte perforin
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, CALCIUM ION, CHLORIDE ION, ...
Authors:Law, R.H, Whisstock, J.C, Caradoc-Davies, T.T.
Deposit date:2010-07-01
Release date:2010-11-03
Last modified:2024-10-16
Method:X-RAY DIFFRACTION (2.75 Å)
Cite:The structural basis for membrane binding and pore formation by lymphocyte perforin.
Nature, 468, 2010
4YN1
DownloadVisualize
BU of 4yn1 by Molmil
THE ATOMIC STRUCTURE OF ANOMALA CUPREA ENTOMOPOXVIRUS (ACEPV) FUSOLIN SPINDLES
Descriptor: 1,2-ETHANEDIOL, Fusolin, beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose
Authors:Chiu, E, Bunker, R.D, Metcalf, P.
Deposit date:2015-03-09
Release date:2015-04-08
Last modified:2024-10-23
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:Structural basis for the enhancement of virulence by viral spindles and their in vivo crystallization.
Proc.Natl.Acad.Sci.USA, 112, 2015
4YN2
DownloadVisualize
BU of 4yn2 by Molmil
THE ATOMIC STRUCTURE OF WISEANA SPP ENTOMOPOXVIRUS (WSEPV) FUSOLIN SPINDLES
Descriptor: 1,2-ETHANEDIOL, FUSOLIN, ZINC ION, ...
Authors:Chiu, E, Bunker, R.D, Metcalf, P.
Deposit date:2015-03-09
Release date:2015-04-08
Last modified:2024-10-23
Method:X-RAY DIFFRACTION (2.02 Å)
Cite:Structural basis for the enhancement of virulence by viral spindles and their in vivo crystallization.
Proc.Natl.Acad.Sci.USA, 112, 2015

226707

PDB entries from 2024-10-30

PDB statisticsPDBj update infoContact PDBjnumon