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1PZ7
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BU of 1pz7 by Molmil
Modulation of agrin function by alternative splicing and Ca2+ binding
Descriptor: Agrin, CALCIUM ION
Authors:Stetefeld, J, Alexandrescu, A.T, Maciejewski, M.W, Jenny, M, Rathgeb-Szabo, K, Schulthess, T, Landwehr, R, Frank, S, Ruegg, M.A, Kammerer, R.A.
Deposit date:2003-07-10
Release date:2004-04-13
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (1.421 Å)
Cite:Modulation of agrin function by alternative splicing and Ca2+ binding.
STRUCTURE, 12, 2004
3I70
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BU of 3i70 by Molmil
Long-wavelength structure of NtA
Descriptor: Agrin
Authors:Stetefeld, J.
Deposit date:2009-07-07
Release date:2010-03-02
Last modified:2023-09-06
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:An interdomain disulfide bridge links the NtA and first FS domain in agrin.
Protein Sci., 18, 2009
1YBK
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BU of 1ybk by Molmil
RHCC cocrystallized with CAPB
Descriptor: N-(CARBOXYMETHYL)-N,N-DIMETHYL-3-[(1-OXODODECYL)AMINO]-1-PROPANAMINIUM INNER SALT, SULFATE ION, tetrabrachion
Authors:Stetefeld, J.
Deposit date:2004-12-21
Release date:2005-01-18
Last modified:2024-02-14
Method:X-RAY DIFFRACTION (1.45 Å)
Cite:Favourable mediation of crystal contacts by cocoamidopropylbetaine (CAPB).
Acta Crystallogr.,Sect.D, 61, 2005
3FQA
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BU of 3fqa by Molmil
Gabaculien complex of gabaculine resistant GSAM version
Descriptor: 3-AMINOBENZOIC ACID, 4'-DEOXY-4'-AMINOPYRIDOXAL-5'-PHOSPHATE, Glutamate-1-semialdehyde 2,1-aminomutase
Authors:Stetefeld, J.
Deposit date:2009-01-07
Release date:2009-11-24
Last modified:2023-09-06
Method:X-RAY DIFFRACTION (2.35 Å)
Cite:Absence of a catalytic water confers resistance to the neurotoxin gabaculine.
Faseb J., 24, 2010
3FQ8
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BU of 3fq8 by Molmil
M248I mutant of GSAM
Descriptor: 4'-DEOXY-4'-AMINOPYRIDOXAL-5'-PHOSPHATE, Glutamate-1-semialdehyde 2,1-aminomutase
Authors:Stetefeld, J.
Deposit date:2009-01-07
Release date:2009-11-24
Last modified:2023-09-06
Method:X-RAY DIFFRACTION (2 Å)
Cite:Absence of a catalytic water confers resistance to the neurotoxin gabaculine.
Faseb J., 24, 2010
3FQ7
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BU of 3fq7 by Molmil
Gabaculine complex of GSAM
Descriptor: 3-[O-PHOSPHONOPYRIDOXYL]--AMINO-BENZOIC ACID, Glutamate-1-semialdehyde 2,1-aminomutase
Authors:Stetefeld, J.
Deposit date:2009-01-07
Release date:2009-11-24
Last modified:2024-02-21
Method:X-RAY DIFFRACTION (2.15 Å)
Cite:Absence of a catalytic water confers resistance to the neurotoxin gabaculine.
Faseb J., 24, 2010
3GPR
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BU of 3gpr by Molmil
Crystal structure of rhodocetin
Descriptor: Rhodocetin subunit alpha, Rhodocetin subunit beta, Rhodocetin subunit delta, ...
Authors:Stetefeld, J.
Deposit date:2009-03-23
Release date:2009-12-15
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (3.2 Å)
Cite:The alpha2beta1 integrin-specific antagonist rhodocetin is a cruciform, heterotetrameric molecule
Faseb J., 23, 2009
1PXU
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BU of 1pxu by Molmil
Crystal structure of chicken NtA from a eukaryotic source at 2.2A resolution
Descriptor: agrin
Authors:Stetefeld, J.
Deposit date:2003-07-07
Release date:2004-06-29
Last modified:2023-08-16
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:Structure and laminin-binding specificity of the NtA domain expressed in eukaryotic cells.
Matrix Biol., 23, 2005
1MZ9
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BU of 1mz9 by Molmil
Storage function of COMP:the crystal structure of the coiled-coil domain in complex with vitamin D3
Descriptor: 3-{2-[1-(5-HYDROXY-1,5-DIMETHYL-HEXYL)-7A-METHYL-OCTAHYDRO-INDEN-4-YLIDENE]-ETHYLIDENE}-4-METHYLENE-CYCLOHEXANOL, cartilage oligomeric matrix protein
Authors:Stetefeld, J.
Deposit date:2002-10-07
Release date:2003-01-28
Last modified:2022-12-21
Method:X-RAY DIFFRACTION (1.7 Å)
Cite:Storage function of cartilage oligomeric matrix protein: the crystal structure of the coiled-coil domain in complex with vitamin D(3).
EMBO J., 21, 2002
3V2P
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BU of 3v2p by Molmil
COMPcc in complex with fatty acids
Descriptor: Cartilage Oligomerization matrix protein (coiled-coil domain), STEARIC ACID
Authors:Stetefeld, J.
Deposit date:2011-12-12
Release date:2013-01-16
Last modified:2023-09-13
Method:X-RAY DIFFRACTION (1.873 Å)
Cite:The pentameric channel of COMPcc in complex with different fatty acids.
Plos One, 7, 2012
3V2N
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BU of 3v2n by Molmil
COMPcc in complex with fatty acids
Descriptor: Cartilage Oligomerization matrix protein (coiled-coil domain), MYRISTIC ACID
Authors:Stetefeld, J.
Deposit date:2011-12-12
Release date:2013-01-16
Last modified:2023-09-13
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:The pentameric channel of COMPcc in complex with different fatty acids.
Plos One, 7, 2012
3V2Q
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BU of 3v2q by Molmil
COMPcc in complex with fatty acids
Descriptor: Cartilage Oligomerization matrix protein (coiled-coil domain), PALMITIC ACID
Authors:Stetefeld, J.
Deposit date:2011-12-12
Release date:2013-01-16
Last modified:2013-03-20
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:The pentameric channel of COMPcc in complex with different fatty acids.
Plos One, 7, 2012
7MX9
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BU of 7mx9 by Molmil
Crystal structure of the SARS-CoV-2 ORF8 accessory protein
Descriptor: ORF8 protein
Authors:Bailey-Elkin, B.A, Stetefeld, J.
Deposit date:2021-05-18
Release date:2023-01-25
Last modified:2023-10-25
Method:X-RAY DIFFRACTION (2.6 Å)
Cite:The unique ORF8 protein of SARS-CoV-2 binds to human dendritic cells and induces a cytokine storm
To Be Published
9D77
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BU of 9d77 by Molmil
Crystal form of Netrin-1 mimics nanotubes
Descriptor: (4S)-2-METHYL-2,4-PENTANEDIOL, 2-acetamido-2-deoxy-beta-D-glucopyranose, CALCIUM ION, ...
Authors:Meier, M, Krahn, N.J, McDougall, M.D, Rafiei, F, Koch, M, Stetefeld, J.
Deposit date:2024-08-16
Release date:2024-10-09
Method:X-RAY DIFFRACTION (3.4 Å)
Cite:Mechanistic insights in the higher-order protein assemblies of netrin-1
To Be Published
7R6H
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BU of 7r6h by Molmil
RHCC in complex with o-carborane
Descriptor: Tetrabrachion, ortho-carborane
Authors:Heide, F, McDougall, M, Stetefeld, J.
Deposit date:2021-06-22
Release date:2021-07-07
Last modified:2023-10-18
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:Boron rich nanotube drug carrier system is suited for boron neutron capture therapy.
Sci Rep, 11, 2021
4WNX
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BU of 4wnx by Molmil
Netrin 4 lacking the C-terminal Domain
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, CALCIUM ION, ...
Authors:McDougall, M, Patel, T, Reuten, R, Meier, M, Koch, M, Stetefeld, J.
Deposit date:2014-10-14
Release date:2016-02-10
Last modified:2024-10-16
Method:X-RAY DIFFRACTION (2.723 Å)
Cite:Structural decoding of netrin-4 reveals a regulatory function towards mature basement membranes.
Nat Commun, 7, 2016
2VZ4
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BU of 2vz4 by Molmil
The N-terminal domain of MerR-like protein TipAL bound to promoter DNA
Descriptor: 5'-D(*CP*TP*CP*CP*TP*CP*AP*CP*GP*TP *CP*AP*CP*GP*TP*GP*AP*GP*GP*TP*G)-3', HTH-TYPE TRANSCRIPTIONAL ACTIVATOR TIPA
Authors:Allan, M.G, Stetefeld, J, Schirmer, T.
Deposit date:2008-07-30
Release date:2009-11-17
Last modified:2023-12-13
Method:X-RAY DIFFRACTION (2.9 Å)
Cite:Structure of the Transcriptionally Inactive Merr Domain Tipan in Complex with DNA
To be Published
5UA3
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BU of 5ua3 by Molmil
Crystal Structure of a DNA G-Quadruplex with a Cytosine Bulge
Descriptor: DNA (5'-D(*GP*GP*GP*TP*TP*GP*CP*GP*GP*AP*GP*GP*GP*TP*GP*GP*GP*CP*CP*T)-3'), POTASSIUM ION
Authors:Meier, M, McDougall, M.D, Krahn, N.J, Moya-Torres, A, McRae, E.K.S, Booy, E.P, Patel, T.R, McKenna, S.A, Stetefeld, J.
Deposit date:2016-12-18
Release date:2017-11-22
Last modified:2023-10-04
Method:X-RAY DIFFRACTION (1.8802 Å)
Cite:Structure and hydrodynamics of a DNA G-quadruplex with a cytosine bulge.
Nucleic Acids Res., 46, 2018
6BRI
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BU of 6bri by Molmil
RHCC with unreduced and reduced Mercury complexes
Descriptor: GLYCEROL, IODIDE ION, MERCURY (II) IODIDE, ...
Authors:McDougall, M, Trieu, B, Stetefeld, J.
Deposit date:2017-11-30
Release date:2018-02-07
Last modified:2023-10-04
Method:X-RAY DIFFRACTION (3.266 Å)
Cite:Reductive power of the archaea right-handed coiled coil nanotube (RHCC-NT) and incorporation of mercury clusters inside protein cages.
J. Struct. Biol., 203, 2018
5JR5
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BU of 5jr5 by Molmil
RHCC in Complex with Elemental Sulfur
Descriptor: SULFATE ION, Tetrabrachion, octathiocane
Authors:McDougall, M, Meier, M, Stetefeld, J.
Deposit date:2016-05-05
Release date:2017-05-10
Last modified:2023-09-27
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:Archaea S-layer nanotube from a "black smoker" in complex with cyclo-octasulfur (S8 ) rings.
Proteins, 85, 2017
5VKF
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BU of 5vkf by Molmil
RHCC in complex with Naphthalene
Descriptor: NAPHTHALENE, SULFATE ION, Tetrabrachion
Authors:McDougall, M, Stetefeld, J.
Deposit date:2017-04-21
Release date:2018-04-25
Last modified:2023-10-04
Method:X-RAY DIFFRACTION (2.752 Å)
Cite:Proteinaceous Nano container Encapsulate Polycyclic Aromatic Hydrocarbons.
Sci Rep, 9, 2019
4OVE
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BU of 4ove by Molmil
X-ray Crystal Structure of Mouse Netrin-1
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, CALCIUM ION, ...
Authors:Meier, M, Nikodemus, D, Reuten, R, Patel, T.R, Orriss, G, Okun, N, Koch, M, Stetefeld, J.
Deposit date:2014-02-21
Release date:2015-02-25
Last modified:2020-07-29
Method:X-RAY DIFFRACTION (2.64 Å)
Cite:Structural Decoding of the Netrin-1/UNC5 Interaction and its Therapeutical Implications in Cancers.
Cancer Cell, 29, 2016
8SNP
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BU of 8snp by Molmil
Crystal structure of mouse Netrin-1 in complex with samarium ions
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-[alpha-L-fucopyranose-(1-6)]2-acetamido-2-deoxy-beta-D-glucopyranose, ...
Authors:Heide, F, Legare, S, Stetefeld, J.
Deposit date:2023-04-27
Release date:2024-02-07
Method:X-RAY DIFFRACTION (3.4 Å)
Cite:Investigating the structural and functional roles of calcium binding in Netrin-1
To Be Published
8TSM
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BU of 8tsm by Molmil
Crystal structure of chicken Netrin-1 LN LE1-2
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, Netrin-1
Authors:Heide, F, Rafiei, F, Stetefeld, J.
Deposit date:2023-08-11
Release date:2024-08-28
Last modified:2024-10-16
Method:X-RAY DIFFRACTION (3.9 Å)
Cite:Investigation of the dynamic nature of Netrin-1 on dependence receptor signaling
To Be Published
7LRF
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BU of 7lrf by Molmil
Netrin-1 in complex with SOS
Descriptor: 1,2-ETHANEDIOL, 1,3,4,6-tetra-O-sulfo-beta-D-fructofuranose-(2-1)-2,3,4,6-tetra-O-sulfonato-alpha-D-glucopyranose, 2-[N-CYCLOHEXYLAMINO]ETHANE SULFONIC ACID, ...
Authors:Gupta, M, McDougall, M, Torres, A.M, Stetefeld, J.
Deposit date:2021-02-16
Release date:2022-02-23
Last modified:2024-10-16
Method:X-RAY DIFFRACTION (3.21 Å)
Cite:The dynamic nature of netrin-1 and the structural basis for glycosaminoglycan fragment-induced filament formation.
Nat Commun, 14, 2023

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