6A8U
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![BU of 6a8u by Molmil](/molmil-images/mine/6a8u) | PhoQ sensor domain (wild type): analysis of internal cavity | Descriptor: | Sensor protein PhoQ | Authors: | Yoshitani, K, Ishii, E, Taniguchi, K, Sugimoto, H, Shiro, Y, Mori, H, Akiyama, Y, Kato, A, Utsumi, R, Eguchi, Y. | Deposit date: | 2018-07-10 | Release date: | 2019-01-30 | Last modified: | 2023-11-22 | Method: | X-RAY DIFFRACTION (1.848 Å) | Cite: | Identification of an internal cavity in the PhoQ sensor domain for PhoQ activity and SafA-mediated control. Biosci. Biotechnol. Biochem., 83, 2019
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1NFT
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![BU of 1nft by Molmil](/molmil-images/mine/1nft) | OVOTRANSFERRIN, N-TERMINAL LOBE, IRON LOADED OPEN FORM | Descriptor: | FE (III) ION, NITRILOTRIACETIC ACID, PROTEIN (OVOTRANSFERRIN), ... | Authors: | Mizutani, K, Yamashita, H, Kurokawa, H, Mikami, B, Hirose, M. | Deposit date: | 1999-01-07 | Release date: | 1999-01-13 | Last modified: | 2023-11-15 | Method: | X-RAY DIFFRACTION (2.1 Å) | Cite: | Alternative structural state of transferrin. The crystallographic analysis of iron-loaded but domain-opened ovotransferrin N-lobe. J.Biol.Chem., 274, 1999
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6IXR
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![BU of 6ixr by Molmil](/molmil-images/mine/6ixr) | Structure of Myo2-GTD in complex with Inp2 | Descriptor: | Inheritance of peroxisomes protein 2, Myosin-2, SULFATE ION | Authors: | Tang, K, Wei, Z. | Deposit date: | 2018-12-11 | Release date: | 2019-03-06 | Last modified: | 2023-11-22 | Method: | X-RAY DIFFRACTION (2.854 Å) | Cite: | Structural mechanism for versatile cargo recognition by the yeast class V myosin Myo2. J.Biol.Chem., 294, 2019
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6IXO
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![BU of 6ixo by Molmil](/molmil-images/mine/6ixo) | Apo structure of Myo2-GTD | Descriptor: | CHLORIDE ION, Myosin-2, SULFATE ION | Authors: | Tang, K, Wei, Z. | Deposit date: | 2018-12-11 | Release date: | 2019-03-06 | Last modified: | 2023-11-22 | Method: | X-RAY DIFFRACTION (1.901 Å) | Cite: | Structural mechanism for versatile cargo recognition by the yeast class V myosin Myo2. J.Biol.Chem., 294, 2019
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6IXP
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![BU of 6ixp by Molmil](/molmil-images/mine/6ixp) | Structure of Myo2-GTD in complex with Mmr1 | Descriptor: | Mitochondrial MYO2 receptor-related protein 1, Myosin-2 | Authors: | Tang, K, Wei, Z. | Deposit date: | 2018-12-11 | Release date: | 2019-03-06 | Last modified: | 2023-11-22 | Method: | X-RAY DIFFRACTION (2.733 Å) | Cite: | Structural mechanism for versatile cargo recognition by the yeast class V myosin Myo2. J.Biol.Chem., 294, 2019
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1GEH
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![BU of 1geh by Molmil](/molmil-images/mine/1geh) | CRYSTAL STRUCTURE OF ARCHAEAL RUBISCO (RIBULOSE 1,5-BISPHOSPHATE CARBOXYLASE/OXYGENASE) | Descriptor: | RIBULOSE-1,5-BISPHOSPHATE CARBOXYLASE/OXYGENASE, SULFATE ION | Authors: | Kitano, K, Maeda, N, Fukui, T, Atomi, H, Imanaka, T, Miki, K. | Deposit date: | 2000-11-13 | Release date: | 2001-12-19 | Last modified: | 2023-12-27 | Method: | X-RAY DIFFRACTION (2.8 Å) | Cite: | Crystal Structure of a Novel-Type Archaeal Rubisco with Pentagonal Symmetry Structure, 9, 2001
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2Z3K
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![BU of 2z3k by Molmil](/molmil-images/mine/2z3k) | complex structure of LF-transferase and rAF | Descriptor: | 2-(6-AMINO-OCTAHYDRO-PURIN-9-YL)-5-HYDROXYMETHYL-TETRAHYDRO-FURAN-3,4-DIOL, D(-)-TARTARIC ACID, Leucyl/phenylalanyl-tRNA-protein transferase, ... | Authors: | Watanabe, K, Toh, Y, Tomita, K. | Deposit date: | 2007-06-04 | Release date: | 2007-10-23 | Last modified: | 2023-11-01 | Method: | X-RAY DIFFRACTION (2.85 Å) | Cite: | Protein-based peptide-bond formation by aminoacyl-tRNA protein transferase Nature, 449, 2007
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2Z3M
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![BU of 2z3m by Molmil](/molmil-images/mine/2z3m) | complex structure of LF-transferase and dAF | Descriptor: | (2R,3S,5R)-5-(6-amino-9H-purin-9-yl)-tetrahydro-2-(hydroxymethyl)furan-3-ol, D(-)-TARTARIC ACID, Leucyl/phenylalanyl-tRNA-protein transferase, ... | Authors: | Watanabe, K, Toh, Y, Tomita, K. | Deposit date: | 2007-06-04 | Release date: | 2007-10-23 | Last modified: | 2023-11-01 | Method: | X-RAY DIFFRACTION (2.7 Å) | Cite: | Protein-based peptide-bond formation by aminoacyl-tRNA protein transferase Nature, 449, 2007
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2Z3L
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![BU of 2z3l by Molmil](/molmil-images/mine/2z3l) | complex structure of LF-transferase and peptide A | Descriptor: | D(-)-TARTARIC ACID, Leucyl/phenylalanyl-tRNA-protein transferase, peptide (PHE)(ARG)(TYR)(LEU)(GLY) | Authors: | Watanabe, K, Toh, Y, Tomita, K. | Deposit date: | 2007-06-04 | Release date: | 2007-10-23 | Last modified: | 2023-11-01 | Method: | X-RAY DIFFRACTION (2.75 Å) | Cite: | Protein-based peptide-bond formation by aminoacyl-tRNA protein transferase Nature, 449, 2007
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2Z3N
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![BU of 2z3n by Molmil](/molmil-images/mine/2z3n) | complex structure of LF-transferase and peptide B | Descriptor: | D(-)-TARTARIC ACID, Leucyl/phenylalanyl-tRNA-protein transferase, peptide (PHE)(ARG)(TYR)(LEU)(GLY) | Authors: | Watanabe, K, Toh, Y, Tomita, K. | Deposit date: | 2007-06-04 | Release date: | 2007-10-23 | Last modified: | 2023-11-01 | Method: | X-RAY DIFFRACTION (2.5 Å) | Cite: | Protein-based peptide-bond formation by aminoacyl-tRNA protein transferase Nature, 449, 2007
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1X26
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![BU of 1x26 by Molmil](/molmil-images/mine/1x26) | Solution structure of the AA-mismatch DNA complexed with naphthyridine-azaquinolone | Descriptor: | 5'-D(*CP*AP*TP*TP*CP*AP*GP*TP*TP*AP*G)-3', 5'-D(*CP*TP*AP*AP*CP*AP*GP*AP*AP*TP*G)-3', N~3~-{3-[(7-METHYL-1,8-NAPHTHYRIDIN-2-YL)AMINO]-3-OXOPROPYL}-N~1~-[(7-OXO-7,8-DIHYDRO-1,8-NAPHTHYRIDIN-2-YL)METHYL]-BET A-ALANINAMIDE | Authors: | Nakatani, K, Hagihara, S, Goto, Y, Kobori, A, Hagihara, M, Hayashi, G, Kyo, M, Nomura, M, Mishima, M, Kojima, C. | Deposit date: | 2005-04-20 | Release date: | 2006-04-04 | Last modified: | 2024-05-29 | Method: | SOLUTION NMR | Cite: | Small-molecule ligand induces nucleotide flipping in (CAG)n trinucleotide repeats Nat.Chem.Biol., 1, 2005
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2ZZ9
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![BU of 2zz9 by Molmil](/molmil-images/mine/2zz9) | Structure of aquaporin-4 S180D mutant at 2.8 A resolution by electron crystallography | Descriptor: | 1,2-dioleoyl-sn-glycero-3-phosphoethanolamine, Aquaporin-4 | Authors: | Tani, K, Mitsuma, T, Hiroaki, Y, Kamegawa, A, Nishikawa, K, Tanimura, Y, Fujiyoshi, Y. | Deposit date: | 2009-02-06 | Release date: | 2009-06-09 | Last modified: | 2023-11-08 | Method: | ELECTRON CRYSTALLOGRAPHY (2.8 Å) | Cite: | Mechanism of Aquaporin-4's Fast and Highly Selective Water Conduction and Proton Exclusion. J.Mol.Biol., 389, 2009
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1R2J
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![BU of 1r2j by Molmil](/molmil-images/mine/1r2j) | FkbI for Biosynthesis of Methoxymalonyl Extender Unit of Fk520 Polyketide Immunosuppresant | Descriptor: | FLAVIN-ADENINE DINUCLEOTIDE, protein FkbI | Authors: | Watanabe, K, Khosla, C, Stroud, R.M, Tsai, S.-C. | Deposit date: | 2003-09-28 | Release date: | 2003-11-25 | Last modified: | 2024-02-14 | Method: | X-RAY DIFFRACTION (2.1 Å) | Cite: | Crystal Structure of an Acyl-ACP Dehydrogenase from the FK520 Polyketide Biosynthetic Pathway: Insights into Extender Unit Biosynthesis J.Mol.Biol., 334, 2003
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1TZQ
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![BU of 1tzq by Molmil](/molmil-images/mine/1tzq) | Crystal structure of the equinatoxin II 8-69 double cysteine mutant | Descriptor: | Equinatoxin II | Authors: | Kristan, K, Podlesek, Z, Hojnik, V, Gutirrez-Aguirre, I, Guncar, G, Turk, D.A, Gonzalez-Maas, J.M, Lakey, J.H, Anderluh, G. | Deposit date: | 2004-07-11 | Release date: | 2004-09-28 | Last modified: | 2023-10-25 | Method: | X-RAY DIFFRACTION (2.3 Å) | Cite: | Pore formation by equinatoxin, a eukaryotic pore-forming toxin, requires a flexible N-terminal region and a stable beta-sandwich J.Biol.Chem., 279, 2004
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1V6A
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![BU of 1v6a by Molmil](/molmil-images/mine/1v6a) | |
1TFA
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![BU of 1tfa by Molmil](/molmil-images/mine/1tfa) | OVOTRANSFERRIN, N-TERMINAL LOBE, APO FORM | Descriptor: | PROTEIN (OVOTRANSFERRIN), SULFATE ION | Authors: | Mizutani, K, Yamashita, H, Mikami, B, Hirose, M. | Deposit date: | 1999-01-07 | Release date: | 1999-01-13 | Last modified: | 2018-04-04 | Method: | X-RAY DIFFRACTION (1.9 Å) | Cite: | Alternative structural state of transferrin. The crystallographic analysis of iron-loaded but domain-opened ovotransferrin N-lobe. J.Biol.Chem., 274, 1999
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1V9F
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![BU of 1v9f by Molmil](/molmil-images/mine/1v9f) | Crystal structure of catalytic domain of pseudouridine synthase RluD from Escherichia coli | Descriptor: | PHOSPHATE ION, Ribosomal large subunit pseudouridine synthase D | Authors: | Mizutani, K, Machida, Y, Unzai, S, Park, S.-Y, Tame, J.R.H. | Deposit date: | 2004-01-26 | Release date: | 2004-05-18 | Last modified: | 2023-12-27 | Method: | X-RAY DIFFRACTION (1.7 Å) | Cite: | Crystal structures of the catalytic domains of pseudouridine synthases RluC and RluD from Escherichia coli Biochemistry, 43, 2004
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1UOK
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![BU of 1uok by Molmil](/molmil-images/mine/1uok) | CRYSTAL STRUCTURE OF B. CEREUS OLIGO-1,6-GLUCOSIDASE | Descriptor: | OLIGO-1,6-GLUCOSIDASE | Authors: | Watanabe, K, Hata, Y, Kizaki, H, Katsube, Y, Suzuki, Y. | Deposit date: | 1998-07-28 | Release date: | 1999-02-16 | Last modified: | 2024-02-14 | Method: | X-RAY DIFFRACTION (2 Å) | Cite: | The refined crystal structure of Bacillus cereus oligo-1,6-glucosidase at 2.0 A resolution: structural characterization of proline-substitution sites for protein thermostabilization. J.Mol.Biol., 269, 1997
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1J1R
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![BU of 1j1r by Molmil](/molmil-images/mine/1j1r) | Structure of Pokeweed Antiviral Protein from Seeds (PAP-S1) Complexed with Adenine | Descriptor: | 2-acetamido-2-deoxy-beta-D-glucopyranose, ADENINE, Antiviral Protein S | Authors: | Watanabe, K, Sato, E, Honjo, E, Motoshima, H, Kurokawa, H, Mikami, B, Monzingo, A.F, Robertus, J.D, Fujii, H, Hidaka, A. | Deposit date: | 2002-12-14 | Release date: | 2004-02-03 | Last modified: | 2023-12-27 | Method: | X-RAY DIFFRACTION (1.9 Å) | Cite: | Crystal Structure of Pokweed Antiviral Protein from Seeds (PAP-S1) at 1.8 Angstrom Resolution To be published
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1J1S
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![BU of 1j1s by Molmil](/molmil-images/mine/1j1s) | Pokeweed Antiviral Protein from Seeds (PAP-S1) Complexed with Formycin | Descriptor: | 2-acetamido-2-deoxy-beta-D-glucopyranose, Antiviral Protein S, FORMYCIN-5'-MONOPHOSPHATE | Authors: | Watanabe, K, Sato, E, Honjo, E, Motoshima, H, Kurokawa, H, Mikami, B, Monzingo, A.F, Robertus, J.D, Fujii, H, Hidaka, A. | Deposit date: | 2002-12-14 | Release date: | 2004-02-03 | Last modified: | 2023-12-27 | Method: | X-RAY DIFFRACTION (2 Å) | Cite: | Crystal Structure of Pokweed Antiviral Protein from Seeds (PAP-S1) at 1.8 Angstrom Resolution To be published
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1IQ7
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![BU of 1iq7 by Molmil](/molmil-images/mine/1iq7) | Ovotransferrin, C-Terminal Lobe, Apo Form | Descriptor: | 2-acetamido-2-deoxy-beta-D-glucopyranose, Ovotransferrin, SULFATE ION | Authors: | Mizutani, K, Muralidhara, B.K, Yamashita, H, Tabata, S, Mikami, B, Hirose, M. | Deposit date: | 2001-07-06 | Release date: | 2001-11-28 | Last modified: | 2023-12-27 | Method: | X-RAY DIFFRACTION (2.3 Å) | Cite: | Anion-mediated Fe3+ release mechanism in ovotransferrin C-lobe: a structurally identified SO4(2-) binding site and its implications for the kinetic pathway. J.Biol.Chem., 276, 2001
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3VUP
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![BU of 3vup by Molmil](/molmil-images/mine/3vup) | Beta-1,4-mannanase from the common sea hare Aplysia kurodai | Descriptor: | 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL, Beta-1,4-mannanase, SULFATE ION | Authors: | Mizutani, K, Tsuchiya, S, Toyoda, M, Nanbu, Y, Tominaga, K, Yuasa, K, Takahashi, N, Tsuji, A, Mikami, B. | Deposit date: | 2012-07-04 | Release date: | 2012-10-17 | Method: | X-RAY DIFFRACTION (1.05 Å) | Cite: | Structure of beta-1,4-mannanase from the common sea hare Aplysia kurodai at 1.05 A resolution. Acta Crystallogr.,Sect.F, 68, 2012
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1J1Q
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![BU of 1j1q by Molmil](/molmil-images/mine/1j1q) | Structure of Pokeweed Antiviral Protein from Seeds (PAP-S1) | Descriptor: | 2-acetamido-2-deoxy-beta-D-glucopyranose, Antiviral protein S | Authors: | Watanabe, K, Sato, E, Honjo, E, Motoshima, H, Kurokawa, H, Mikami, B, Monzingo, A.F, Robertus, J.D, Fujii, H, Hidaka, A. | Deposit date: | 2002-12-14 | Release date: | 2004-02-03 | Last modified: | 2023-12-27 | Method: | X-RAY DIFFRACTION (1.8 Å) | Cite: | Crystal Structure of Pokweed Antiviral Protein from Seeds (PAP-S1) at 1.8 Angstrom Resolution To be published
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1IEJ
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![BU of 1iej by Molmil](/molmil-images/mine/1iej) | OVOTRANSFERRIN, N-TERMINAL LOBE, HOLO FORM, AT 1.65 A RESOLUTION | Descriptor: | CARBONATE ION, FE (III) ION, OVOTRANSFERRIN | Authors: | Mizutani, K, Mikami, B, Hirose, M. | Deposit date: | 2001-04-10 | Release date: | 2001-06-20 | Last modified: | 2017-10-04 | Method: | X-RAY DIFFRACTION (1.65 Å) | Cite: | Domain closure mechanism in transferrins: new viewpoints about the hinge structure and motion as deduced from high resolution crystal structures of ovotransferrin N-lobe. J.Mol.Biol., 309, 2001
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1J1M
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![BU of 1j1m by Molmil](/molmil-images/mine/1j1m) | Ricin A-Chain (Recombinant) at 100K | Descriptor: | Ricin, SULFATE ION, alpha-D-glucopyranose-(1-1)-alpha-D-glucopyranose | Authors: | Watanabe, K, Motoshima, H. | Deposit date: | 2002-12-10 | Release date: | 2004-02-03 | Last modified: | 2023-12-27 | Method: | X-RAY DIFFRACTION (1.5 Å) | Cite: | Ricin A-Chain (Recombinant) at 100K To be published
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