5XYL
 
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8TOO
 | | Crystal structure of Epstein-Barr virus gp42 in complex with antibody 4C12 | | Descriptor: | 4C12 heavy chain, 4C12 light chain, Glycoprotein 42 | | Authors: | Bu, W, Kumar, A, Board, N, Kim, J, Dowdell, K, Zhang, S, Lei, Y, Hostal, A, Krogmann, T, Wang, Y, Pittaluga, S, Marcotrigiano, J, Cohen, J.I. | | Deposit date: | 2023-08-03 | | Release date: | 2024-03-27 | | Last modified: | 2024-11-13 | | Method: | X-RAY DIFFRACTION (2.6 Å) | | Cite: | Epstein-Barr virus gp42 antibodies reveal sites of vulnerability for receptor binding and fusion to B cells.
Immunity, 57, 2024
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8TNN
 | | Crystal structure of Epstein-Barr virus gH/gL/gp42 in complex with gp42 antibody A10 | | Descriptor: | 2-acetamido-2-deoxy-beta-D-glucopyranose, A10 heavy chain, A10 light chain, ... | | Authors: | Bu, W, Kumar, A, Board, N, Kim, J, Dowdell, K, Zhang, S, Lei, Y, Hostal, A, Krogmann, T, Wang, Y, Pittaluga, S, Marcotrigiano, J, Cohen, J.I. | | Deposit date: | 2023-08-02 | | Release date: | 2024-03-27 | | Last modified: | 2024-10-09 | | Method: | X-RAY DIFFRACTION (3.36 Å) | | Cite: | Epstein-Barr virus gp42 antibodies reveal sites of vulnerability for receptor binding and fusion to B cells.
Immunity, 57, 2024
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8TNT
 | | Crystal structure of Epstein-Barr virus gH/gL/gp42 in complex with antibodies F-2-1 and 769C2 | | Descriptor: | 2-acetamido-2-deoxy-beta-D-glucopyranose, 769C2 heavy chain, 769C2 light chain, ... | | Authors: | Bu, W, Kumar, A, Board, N, Kim, J, Dowdell, K, Zhang, S, Lei, Y, Hostal, A, Krogmann, T, Wang, Y, Pittaluga, S, Marcotrigiano, J, Cohen, J.I. | | Deposit date: | 2023-08-02 | | Release date: | 2024-03-27 | | Last modified: | 2024-11-06 | | Method: | X-RAY DIFFRACTION (3.15 Å) | | Cite: | Epstein-Barr virus gp42 antibodies reveal sites of vulnerability for receptor binding and fusion to B cells.
Immunity, 57, 2024
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9BDE
 | | Middle Region of Apolipoprotein B 100 bound to Low Density Lipoprotein Receptor | | Descriptor: | 2-acetamido-2-deoxy-beta-D-glucopyranose, ApoB100 nanobody 4, Apolipoprotein B 100, ... | | Authors: | Dearborn, A.D, Reimund, M, Graziano, G, Lei, H, Kumar, A, Neufeld, E.B, Remaley, A.T, Marcotrigiano, J. | | Deposit date: | 2024-04-11 | | Release date: | 2024-12-25 | | Last modified: | 2025-03-05 | | Method: | ELECTRON MICROSCOPY (4.18 Å) | | Cite: | Structure of apolipoprotein B100 bound to the low-density lipoprotein receptor.
Nature, 638, 2025
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9BD8
 | | ApoB 100 beta barrel bound to LDLR beta propeller | | Descriptor: | 2-acetamido-2-deoxy-beta-D-glucopyranose, Apolipoprotein B-100, Low-density lipoprotein receptor | | Authors: | Dearborn, A.D, Reimund, M, Graziano, G, Lei, H, Kumar, A, Neufeld, E.B, Remaley, A.T, Marcotrigiano, J. | | Deposit date: | 2024-04-11 | | Release date: | 2024-12-25 | | Last modified: | 2025-03-05 | | Method: | ELECTRON MICROSCOPY (4.8 Å) | | Cite: | Structure of apolipoprotein B100 bound to the low-density lipoprotein receptor.
Nature, 638, 2025
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9COO
 | | Nanobody 4 bound to Apolipoprotein B 100 | | Descriptor: | 2-acetamido-2-deoxy-beta-D-glucopyranose, ApoB100 nanobody 4, Apolipoprotein B 100, ... | | Authors: | Dearborn, A.D, Kumar, A, Reimund, M, Graziano, G, Lei, H, Neufeld, E.B, Remaley, A.T, Marcotrigiano, J. | | Deposit date: | 2024-07-17 | | Release date: | 2024-12-25 | | Last modified: | 2025-03-05 | | Method: | ELECTRON MICROSCOPY (3.73 Å) | | Cite: | Structure of apolipoprotein B100 bound to the low-density lipoprotein receptor.
Nature, 638, 2025
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9EDP
 | | GVIII-Chiba040502 norovirus protruding domain | | Descriptor: | CHLORIDE ION, VP1 | | Authors: | Holroyd, D.L, Kumar, A, Bruning, J.B, Hansman, G.S. | | Deposit date: | 2024-11-17 | | Release date: | 2025-03-05 | | Last modified: | 2025-04-23 | | Method: | X-RAY DIFFRACTION (1.76 Å) | | Cite: | Antigenic structural analysis of bat and human norovirus protruding (P) domains.
J.Virol., 99, 2025
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9EDN
 | | GII.23: Loreto1847 norovirus protruding domain | | Descriptor: | 1,2-ETHANEDIOL, CHLORIDE ION, VP1 | | Authors: | Holroyd, D.L, Kumar, A, Bruning, J.B, Hansman, G.S. | | Deposit date: | 2024-11-17 | | Release date: | 2025-03-05 | | Last modified: | 2025-04-23 | | Method: | X-RAY DIFFRACTION (1.22 Å) | | Cite: | Antigenic structural analysis of bat and human norovirus protruding (P) domains.
J.Virol., 99, 2025
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9EDM
 | | GII.9-VA97207 norovirus protruding domain | | Descriptor: | CHLORIDE ION, Capsid | | Authors: | Holroyd, D.L, Kumar, A, Bruning, J.B, Hansman, G.S. | | Deposit date: | 2024-11-17 | | Release date: | 2025-03-05 | | Last modified: | 2025-04-23 | | Method: | X-RAY DIFFRACTION (1.98 Å) | | Cite: | Antigenic structural analysis of bat and human norovirus protruding (P) domains.
J.Virol., 99, 2025
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9EDQ
 | | GX/NPIH26 bat norovirus protruding domain | | Descriptor: | SULFATE ION, VP1 | | Authors: | Holroyd, D.L, Kumar, A, Bruning, J.B, Hansman, G.S. | | Deposit date: | 2024-11-17 | | Release date: | 2025-03-05 | | Last modified: | 2025-04-23 | | Method: | X-RAY DIFFRACTION (1.63 Å) | | Cite: | Antigenic structural analysis of bat and human norovirus protruding (P) domains.
J.Virol., 99, 2025
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9EDO
 | | GII.27: Loreto0959 norovirus protruding domain | | Descriptor: | CHLORIDE ION, VP1 | | Authors: | Holroyd, D.L, Kumar, A, Bruning, J.B, Hansman, G.S. | | Deposit date: | 2024-11-17 | | Release date: | 2025-03-05 | | Last modified: | 2025-04-23 | | Method: | X-RAY DIFFRACTION (1.42 Å) | | Cite: | Antigenic structural analysis of bat and human norovirus protruding (P) domains.
J.Virol., 99, 2025
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9BD1
 | | beta/alpha1 region of ApoB 100 | | Descriptor: | 2-acetamido-2-deoxy-beta-D-glucopyranose, Apolipoprotein B-100 | | Authors: | Dearborn, A.D, Reimund, M, Graziano, G, Lei, H, Kumar, A, Neufeld, E.B, Remaley, A.T, Marcotrigiano, J. | | Deposit date: | 2024-04-10 | | Release date: | 2024-12-25 | | Last modified: | 2025-03-05 | | Method: | ELECTRON MICROSCOPY (5.4 Å) | | Cite: | Structure of apolipoprotein B100 bound to the low-density lipoprotein receptor.
Nature, 638, 2025
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9BDT
 | | Apolipoprotein B 100 bound to LDL receptor and legobody | | Descriptor: | 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, ApoB100 nanobody 4, ... | | Authors: | Dearborn, A.D, Reimund, M, Graziano, G, Lei, H, Kumar, A, Neufeld, E.B, Remaley, A.T, Marcotrigiano, J. | | Deposit date: | 2024-04-12 | | Release date: | 2024-12-25 | | Last modified: | 2025-03-05 | | Method: | ELECTRON MICROSCOPY (5.4 Å) | | Cite: | Structure of apolipoprotein B100 bound to the low-density lipoprotein receptor.
Nature, 638, 2025
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8HMS
 | | Crystal Structure of PKM2 mutant C474S | | Descriptor: | 1,2-ETHANEDIOL, 1,6-di-O-phosphono-beta-D-fructofuranose, GLYCEROL, ... | | Authors: | Upadhyay, S, Kumar, A, Patel, A.K. | | Deposit date: | 2022-12-05 | | Release date: | 2023-01-11 | | Last modified: | 2024-05-29 | | Method: | X-RAY DIFFRACTION (2.1 Å) | | Cite: | Structural and mechanistic insights into cancer patient-derived mutations in Pyruvate Kinase muscle isoform 2
To Be Published
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8HMU
 | | Crystal Structure of PKM2 mutant R516C | | Descriptor: | 1,2-ETHANEDIOL, 1,6-di-O-phosphono-beta-D-fructofuranose, GLYCEROL, ... | | Authors: | Upadhyay, S, Kumar, A, Patel, A.K. | | Deposit date: | 2022-12-05 | | Release date: | 2023-01-11 | | Last modified: | 2024-05-29 | | Method: | X-RAY DIFFRACTION (2.5 Å) | | Cite: | Structural and mechanistic insights into cancer patient-derived mutations in Pyruvate Kinase muscle isoform 2
To Be Published
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8HMQ
 | | Crystal Structure of PKM2 mutant P403A | | Descriptor: | 1,2-ETHANEDIOL, 1,6-di-O-phosphono-beta-D-fructofuranose, GLYCEROL, ... | | Authors: | Upadhyay, S, Kumar, A, Patel, A.K. | | Deposit date: | 2022-12-05 | | Release date: | 2023-01-11 | | Last modified: | 2024-05-29 | | Method: | X-RAY DIFFRACTION (2.5 Å) | | Cite: | Structural and mechanistic insights into cancer patient-derived mutations in Pyruvate Kinase muscle isoform 2
To Be Published
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8HMR
 | | Crystal Structure of PKM2 mutant L144P | | Descriptor: | 1,2-ETHANEDIOL, 1,6-di-O-phosphono-beta-D-fructofuranose, MAGNESIUM ION, ... | | Authors: | Upadhyay, S, Kumar, A, Patel, A.K. | | Deposit date: | 2022-12-05 | | Release date: | 2023-01-11 | | Last modified: | 2024-05-29 | | Method: | X-RAY DIFFRACTION (2.6 Å) | | Cite: | Structural and mechanistic insights into cancer patient-derived mutations in Pyruvate Kinase muscle isoform 2
To Be Published
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8HY5
 | | Structure of D-amino acid oxidase mutant R38H | | Descriptor: | 1,2-ETHANEDIOL, BENZOIC ACID, D-amino-acid oxidase, ... | | Authors: | Khan, S, Upadhyay, S, Dave, U, Kumar, A, Gomes, J. | | Deposit date: | 2023-01-05 | | Release date: | 2023-01-25 | | Last modified: | 2024-01-10 | | Method: | X-RAY DIFFRACTION (2.1 Å) | | Cite: | Structural and mechanistic insights into ALS patient derived mutations in D-amino acid oxidase.
Int.J.Biol.Macromol., 256, 2023
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6IGR
 | | Crystal structure of S9 peptidase (S514A mutant in inactive state) from Deinococcus radiodurans R1 | | Descriptor: | Acyl-peptide hydrolase, putative, GLYCEROL | | Authors: | Yadav, P, Gaur, N.K, Goyal, V.D, Kumar, A, Makde, R.D. | | Deposit date: | 2018-09-25 | | Release date: | 2018-11-14 | | Last modified: | 2023-11-22 | | Method: | X-RAY DIFFRACTION (2.6 Å) | | Cite: | Carboxypeptidase in prolyl oligopeptidase family: Unique enzyme activation and substrate-screening mechanisms.
J.Biol.Chem., 294, 2019
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6IKG
 | | Crystal structure of substrate-bound S9 peptidase (S514A mutant) from Deinococcus radiodurans | | Descriptor: | Acyl-peptide hydrolase, putative, GLYCEROL, ... | | Authors: | Yadav, P, Kumar, A, Goyal, V.D, Makde, R.D. | | Deposit date: | 2018-10-16 | | Release date: | 2018-11-14 | | Last modified: | 2023-11-22 | | Method: | X-RAY DIFFRACTION (2.3 Å) | | Cite: | Carboxypeptidase in prolyl oligopeptidase family: Unique enzyme activation and substrate-screening mechanisms.
J.Biol.Chem., 294, 2019
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6IRU
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6IX1
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5YZO
 | | Crystal structure of S9 peptidase mutant (S514A) from Deinococcus radiodurans R1 | | Descriptor: | Acyl-peptide hydrolase, putative, DIMETHYL SULFOXIDE, ... | | Authors: | Yadav, P, Jamdar, S.N, Kumar, A, Ghosh, B, Makde, R.D. | | Deposit date: | 2017-12-15 | | Release date: | 2018-11-14 | | Last modified: | 2023-11-22 | | Method: | X-RAY DIFFRACTION (1.7 Å) | | Cite: | Carboxypeptidase in prolyl oligopeptidase family: Unique enzyme activation and substrate-screening mechanisms.
J.Biol.Chem., 294, 2019
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6A4R
 | | Crystal structure of aspartate bound peptidase E from Salmonella enterica | | Descriptor: | ASPARTIC ACID, Peptidase E | | Authors: | Yadav, P, Chandravanshi, K, Goyal, V.D, Singh, R, Kumar, A, Gokhale, S.M, Makde, R.D. | | Deposit date: | 2018-06-20 | | Release date: | 2018-10-24 | | Last modified: | 2023-11-22 | | Method: | X-RAY DIFFRACTION (1.828 Å) | | Cite: | Structure of Asp-bound peptidase E from Salmonella enterica: Active site at dimer interface illuminates Asp recognition.
FEBS Lett., 592, 2018
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