Loading
PDBj
MenuPDBj@FacebookPDBj@TwitterPDBj@YouTubewwPDB FoundationwwPDB
RCSB PDBPDBeBMRBAdv. SearchSearch help
Search by PDB author
4OIK
DownloadVisualize
BU of 4oik by Molmil
(Quasi-)Racemic X-ray crystal structure of glycosylated chemokine Ser-CCL1.
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, C-C motif chemokine 1, CITRIC ACID, ...
Authors:Okamoto, R, Mandal, K, Sawaya, M.R, Kajihara, Y, Yeates, T.O, Kent, S.B.H.
Deposit date:2014-01-19
Release date:2014-05-07
Last modified:2023-12-06
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:(Quasi-)Racemic X-ray Structures of Glycosylated and Non-Glycosylated Forms of the Chemokine Ser-CCL1 Prepared by Total Chemical Synthesis.
Angew.Chem.Int.Ed.Engl., 53, 2014
4QIF
DownloadVisualize
BU of 4qif by Molmil
Crystal Structure of PduA with edge mutation K26A and pore mutation S40H
Descriptor: D(-)-TARTARIC ACID, GLYCEROL, POTASSIUM ION, ...
Authors:Pang, A.H, Sawaya, M.R, Yeates, T.O.
Deposit date:2014-05-30
Release date:2015-02-18
Last modified:2024-02-28
Method:X-RAY DIFFRACTION (1.9951 Å)
Cite:Selective molecular transport through the protein shell of a bacterial microcompartment organelle.
Proc.Natl.Acad.Sci.USA, 112, 2015
4MWG
DownloadVisualize
BU of 4mwg by Molmil
Crystal structure of Burkholderia xenovorans DmrB apo form: A Cubic Protein Cage for Redox Transfer
Descriptor: Putative dihydromethanopterin reductase (AfpA), SULFATE ION
Authors:Bobik, T.A, Cascio, D, Jorda, J, McNamara, D.E, Bustos, C, Wang, T.C, Rasche, M.E, Yeates, T.O.
Deposit date:2013-09-24
Release date:2014-02-19
Last modified:2024-03-20
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:Structure of dihydromethanopterin reductase, a cubic protein cage for redox transfer
J.Biol.Chem., 289, 2014
4NWP
DownloadVisualize
BU of 4nwp by Molmil
Computationally Designed Two-Component Self-Assembling Tetrahedral Cage, T33-21, Crystallized in Space Group R32
Descriptor: AMMONIUM ION, Putative uncharacterized protein, SULFATE ION, ...
Authors:McNamara, D.E, King, N.P, Bale, J.B, Sheffler, W, Baker, D, Yeates, T.O.
Deposit date:2013-12-06
Release date:2014-05-28
Last modified:2023-09-20
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:Accurate design of co-assembling multi-component protein nanomaterials.
Nature, 510, 2014
4NWR
DownloadVisualize
BU of 4nwr by Molmil
Computationally Designed Two-Component Self-Assembling Tetrahedral Cage T33-28
Descriptor: Macrophage migration inhibitory factor-like protein, integron gene cassette protein
Authors:McNamara, D.E, King, N.P, Bale, J.B, Sheffler, W, Baker, D, Yeates, T.O.
Deposit date:2013-12-06
Release date:2014-05-28
Last modified:2023-09-20
Method:X-RAY DIFFRACTION (3.5 Å)
Cite:Accurate design of co-assembling multi-component protein nanomaterials.
Nature, 510, 2014
4NWO
DownloadVisualize
BU of 4nwo by Molmil
Computationally Designed Two-Component Self-Assembling Tetrahedral Cage T33-15
Descriptor: CALCIUM ION, Chorismate mutase AroH, Molybdenum cofactor biosynthesis protein MogA
Authors:McNamara, D.E, King, N.P, Bale, J.B, Sheffler, W, Baker, D, Yeates, T.O.
Deposit date:2013-12-06
Release date:2014-05-28
Last modified:2023-09-20
Method:X-RAY DIFFRACTION (2.8 Å)
Cite:Accurate design of co-assembling multi-component protein nanomaterials.
Nature, 510, 2014
4QF0
DownloadVisualize
BU of 4qf0 by Molmil
Structure of a 16 nm protein cage designed by fusing symmetric oligomeric domains, quadruple mutant, P21212 form
Descriptor: Non-haem bromoperoxidase BPO-A2, Matrix protein 1 chimera
Authors:Lai, Y.-T, Yeates, T.O.
Deposit date:2014-05-19
Release date:2015-05-20
Last modified:2024-02-28
Method:X-RAY DIFFRACTION (6.494 Å)
Cite:Structural transition of a protein nanocage as a function of pH and salt concentration.
To be Published
4OLO
DownloadVisualize
BU of 4olo by Molmil
Ligand-free structure of the GrpU microcompartment shell protein from Clostridiales bacterium 1_7_47FAA
Descriptor: BMC domain protein
Authors:Thompson, M.C, Ahmed, H, McCarty, K.N, Sawaya, M.R, Yeates, T.O.
Deposit date:2014-01-24
Release date:2014-07-30
Last modified:2024-02-28
Method:X-RAY DIFFRACTION (2.5 Å)
Cite:Identification of a unique fe-s cluster binding site in a glycyl-radical type microcompartment shell protein.
J.Mol.Biol., 426, 2014
4QES
DownloadVisualize
BU of 4qes by Molmil
Structure of a 16 nm protein cage designed by fusing symmetric oligomeric domains, quadruple mutant, I222 form
Descriptor: Non-haem bromoperoxidase BPO-A2, Matrix protein 1 chimera
Authors:Lai, Y.-T, Yeates, T.O.
Deposit date:2014-05-18
Release date:2015-05-20
Last modified:2024-02-28
Method:X-RAY DIFFRACTION (4.193 Å)
Cite:Structural transition of a protein nanocage as a function of pH and salt concentration.
To be Published
4QCC
DownloadVisualize
BU of 4qcc by Molmil
Structure of a cube-shaped, highly porous protein cage designed by fusing symmetric oligomeric domains
Descriptor: 2-dehydro-3-deoxy-6-phosphogalactonate aldolase, peptidyl-prolyl cis-trans isomerase chimera
Authors:Lai, Y.-T, Yeates, T.O.
Deposit date:2014-05-10
Release date:2014-11-19
Last modified:2024-02-28
Method:X-RAY DIFFRACTION (7.078 Å)
Cite:Structure of a designed protein cage that self-assembles into a highly porous cube.
Nat Chem, 6, 2014
4P2S
DownloadVisualize
BU of 4p2s by Molmil
Alanine Scanning Mutagenesis Identifies an Asparagine-Arginine-Lysine Triad Essential to Assembly of the Shell of the Pdu Microcompartment
Descriptor: 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL, GLYCEROL, Putative propanediol utilization protein PduA, ...
Authors:Sinha, S, Cheng, S, Sung, Y.W, McNamara, D.E, Sawaya, M.R, Yeates, T.O, Bobik, T.A.
Deposit date:2014-03-03
Release date:2014-05-14
Last modified:2023-12-20
Method:X-RAY DIFFRACTION (1.94 Å)
Cite:Alanine Scanning Mutagenesis Identifies an Asparagine-Arginine-Lysine Triad Essential to Assembly of the Shell of the Pdu Microcompartment.
J.Mol.Biol., 426, 2014
4QFF
DownloadVisualize
BU of 4qff by Molmil
Structure of a 16 nm protein cage designed by fusing symmetric oligomeric domains, quadruple mutant, P212121 form
Descriptor: Non-haem bromoperoxidase BPO-A2, Matrix protein 1 chimera
Authors:Lai, Y.-T, Yeates, T.O.
Deposit date:2014-05-20
Release date:2015-05-20
Last modified:2024-02-28
Method:X-RAY DIFFRACTION (7.811 Å)
Cite:Structural transition of a protein nanocage as a function of pH and salt concentration
To be Published
4QIG
DownloadVisualize
BU of 4qig by Molmil
Crystal Structure of PduA with edge mutation K26A and pore mutation S40C
Descriptor: Propanediol utilization protein PduA, SULFATE ION
Authors:Pang, A.H, Sawaya, M.R, Yeates, T.O.
Deposit date:2014-05-30
Release date:2015-02-18
Last modified:2023-09-20
Method:X-RAY DIFFRACTION (3.297 Å)
Cite:Selective molecular transport through the protein shell of a bacterial microcompartment organelle.
Proc.Natl.Acad.Sci.USA, 112, 2015
4QIV
DownloadVisualize
BU of 4qiv by Molmil
Crystal structure of hexameric microcomparment shell protein from Aeromonas hydrophila
Descriptor: Bacterial microcompartments family protein
Authors:Pang, A.H, Sawaya, M.R, Yeates, T.O.
Deposit date:2014-06-02
Release date:2015-08-12
Last modified:2024-02-28
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:Crystal structure of a hexameric microcomparment protein from Aeromonas hydrophila
To be Published
4QIE
DownloadVisualize
BU of 4qie by Molmil
Crystal Structure of PduA with edge mutation K26D
Descriptor: GLYCEROL, Propanediol utilization protein PduA, SULFATE ION
Authors:Pang, A.H, Sawaya, M.R, Yeates, T.O.
Deposit date:2014-05-30
Release date:2015-06-10
Last modified:2023-09-20
Method:X-RAY DIFFRACTION (2.3501 Å)
Cite:Crystal Structure of PduA with edge mutation K26D
To be Published
4O29
DownloadVisualize
BU of 4o29 by Molmil
PROTEIN-L-ISOASPARTATE O-METHYLTRANSFERASE from Pyrobaculum aerophilum in COMPLEX WITH S-ADENOSYL-L-HOMOCYSTEINE
Descriptor: Protein-L-isoaspartate O-methyltransferase, S-ADENOSYL-L-HOMOCYSTEINE
Authors:Sawaya, M.R, Yeates, T.O, Griffith, S.C.
Deposit date:2013-12-17
Release date:2014-01-15
Last modified:2023-09-20
Method:X-RAY DIFFRACTION (2.9 Å)
Cite:Structure of L-isoaspartyl (D-aspartyl) Methyltransferase
Thesis, University of California, Los Angeles, 2002
6NKQ
DownloadVisualize
BU of 6nkq by Molmil
The structure of bovine beta-lactoglobulin in novel crystals grown at pH 3.8
Descriptor: Beta-lactoglobulin, CALCIUM ION
Authors:McPherson, A.
Deposit date:2019-01-07
Release date:2019-01-23
Last modified:2023-10-11
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:The structure of bovine beta-lactoglobulin in crystals grown at pH 3.8 exhibiting novel threefold twinning.
Acta Crystallogr.,Sect.F, 75, 2019
1AIJ
DownloadVisualize
BU of 1aij by Molmil
PHOTOSYNTHETIC REACTION CENTER FROM RHODOBACTER SPHAEROIDES IN THE CHARGE-NEUTRAL DQAQB STATE
Descriptor: BACTERIOCHLOROPHYLL A, BACTERIOPHEOPHYTIN A, FE (II) ION, ...
Authors:Stowell, M.H.B, Mcphillips, T.M, Soltis, S.M, Rees, D.C, Abresch, E, Feher, G.
Deposit date:1997-04-18
Release date:1997-10-22
Last modified:2024-02-07
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:Light-induced structural changes in photosynthetic reaction center: implications for mechanism of electron-proton transfer.
Science, 276, 1997
1AIG
DownloadVisualize
BU of 1aig by Molmil
PHOTOSYNTHETIC REACTION CENTER FROM RHODOBACTER SPHAEROIDES IN THE D+QB-CHARGE SEPARATED STATE
Descriptor: BACTERIOCHLOROPHYLL A, BACTERIOPHEOPHYTIN A, FE (II) ION, ...
Authors:Stowell, M.H.B, Mcphillips, T.M, Soltis, S.M, Rees, D.C, Abresch, E, Feher, G.
Deposit date:1997-04-17
Release date:1997-10-22
Last modified:2024-02-07
Method:X-RAY DIFFRACTION (2.6 Å)
Cite:Light-induced structural changes in photosynthetic reaction center: implications for mechanism of electron-proton transfer.
Science, 276, 1997
1PVC
DownloadVisualize
BU of 1pvc by Molmil
REFINEMENT OF THE SABIN STRAIN OF TYPE 3 POLIOVIRUS AT 2.4 ANGSTROMS AND THE CRYSTAL STRUCTURES OF ITS VARIANTS AT 2.9 ANGSTROMS RESOLUTION
Descriptor: MYRISTIC ACID, POLIOVIRUS TYPE 3, SABIN STRAIN, ...
Authors:Syed, R, Filman, D.J, Hogle, J.M.
Deposit date:1995-03-30
Release date:1995-09-15
Last modified:2024-06-05
Method:X-RAY DIFFRACTION (2.4 Å)
Cite:Refinement of the Sabin Strain of Type 3 Poliovirus at 2.4 Angstroms and the Crystal Structures of its Variants at 2.9 Angstroms Resolution
To be Published
1PST
DownloadVisualize
BU of 1pst by Molmil
CRYSTALLOGRAPHIC ANALYSES OF SITE-DIRECTED MUTANTS OF THE PHOTOSYNTHETIC REACTION CENTER FROM RHODOBACTER SPHAEROIDES
Descriptor: BACTERIOCHLOROPHYLL A, BACTERIOPHEOPHYTIN A, FE (III) ION, ...
Authors:Chirino, A.J, Feher, G, Rees, D.C.
Deposit date:1993-12-13
Release date:1994-04-30
Last modified:2024-02-14
Method:X-RAY DIFFRACTION (3 Å)
Cite:Crystallographic analyses of site-directed mutants of the photosynthetic reaction center from Rhodobacter sphaeroides.
Biochemistry, 33, 1994
1PSS
DownloadVisualize
BU of 1pss by Molmil
CRYSTALLOGRAPHIC ANALYSES OF SITE-DIRECTED MUTANTS OF THE PHOTOSYNTHETIC REACTION CENTER FROM RHODOBACTER SPHAEROIDES
Descriptor: BACTERIOCHLOROPHYLL A, BACTERIOPHEOPHYTIN A, FE (III) ION, ...
Authors:Chirino, A.J, Feher, G, Rees, D.C.
Deposit date:1993-12-13
Release date:1994-04-30
Last modified:2024-02-14
Method:X-RAY DIFFRACTION (3 Å)
Cite:Crystallographic analyses of site-directed mutants of the photosynthetic reaction center from Rhodobacter sphaeroides.
Biochemistry, 33, 1994
5VL4
DownloadVisualize
BU of 5vl4 by Molmil
Accidental minimum contact crystal lattice formed by a redesigned protein oligomer
Descriptor: T33-53H-B
Authors:Cannon, K.A, Cascio, D, Sawaya, M.R, Park, R, Boyken, S, King, N, Yeates, T.
Deposit date:2017-04-24
Release date:2018-05-23
Last modified:2023-10-04
Method:X-RAY DIFFRACTION (4.1 Å)
Cite:Design and structure of two new protein cages illustrate successes and ongoing challenges in protein engineering.
Protein Sci., 29, 2020
4ZK7
DownloadVisualize
BU of 4zk7 by Molmil
Crystal structure of rescued two-component self-assembling tetrahedral cage T33-31
Descriptor: Chorismate mutase, Divalent-cation tolerance protein CutA
Authors:Liu, Y, Cascio, D, Sawaya, M.R, Bale, J, Collazo, M.J, Park, R, King, N, Baker, D, Yeates, T.
Deposit date:2015-04-30
Release date:2015-07-29
Last modified:2024-03-06
Method:X-RAY DIFFRACTION (3.4 Å)
Cite:Structure of a designed tetrahedral protein assembly variant engineered to have improved soluble expression.
Protein Sci., 24, 2015
1F1O
DownloadVisualize
BU of 1f1o by Molmil
STRUCTURAL STUDIES OF ADENYLOSUCCINATE LYASES
Descriptor: ADENYLOSUCCINATE LYASE
Authors:Toth, E.A, Yeates, T.
Deposit date:2000-05-19
Release date:2001-01-10
Last modified:2024-02-07
Method:X-RAY DIFFRACTION (3.25 Å)
Cite:The crystal structure of adenylosuccinate lyase from Pyrobaculum aerophilum reveals an intracellular protein with three disulfide bonds.
J.Mol.Biol., 301, 2000

223532

PDB entries from 2024-08-07

PDB statisticsPDBj update infoContact PDBjnumon