9Z9E

Structure of FabS1CE2_ER-3c in complex with the extracellular region of EGFR

Summary for 9Z9E

• Entry DOI: 10.2210/pdb9z9e/pdb
• Descriptor: Epidermal growth factor receptor, POTASSIUM ION, DI(HYDROXYETHYL)ETHER, ... (14 entities in total)
• Functional Keywords: epidermal growth factor receptor, high-affinity antibody, domain 3, epidermal growth factor, inhibition, signaling protein
• Biological source: Homo sapiens (human); More
• Total number of polymer chains: 3
• Total formula weight: 121645.69

Authors

Singer, A.U.,Mallette, E.,Bruce, H.A.,Blazer, L.L.,Adams, J.J.,Suits, M.D.L.,Sidhu, S.S. (deposition date: 2025-11-18, release date: 2026-06-03)

Primary citation

Adams, J.J.,Mallette, E.,London, M.,Liang, R.J.,van Dyk, D.,Pavlovic, Z.,Pot, I.,Geyer, C.R.,Bruce, H.A.,Blazer, L.L.,Hokanson, C.A.,Suits, M.D.L.,Singer, A.U.,Sidhu, S.S.
Dual targeting of inhibitory EGFR epitopes with synthetic antibodies in therapeutic-resistant cancers.
Protein Sci., 35:e70645-e70645, 2026

PubMed Abstract: Therapeutic antibodies that inhibit the epidermal growth factor receptor (EGFR) are limited to a subset of EGFR-driven cancers. This is in part due to resistance mechanisms that attenuate efficacy. All approved therapeutic antibodies target the closed form of EGFR and compete with the ligand. However, tumors can be desensitized to these antibodies by upregulation of EGFR ligands or through EGFR mutations that uncouple kinase activity from ligand binding. We sought to overcome these resistance mechanisms by developing antibodies targeting alternative epitopes of EGFR. Using phage-displayed libraries, we developed two distinct antibodies, one that competed with EGF and another that did not. Crystal structures revealed that the competitive antibody bound to a site that overlapped the EGF-binding site, whereas the other antibody bound to the arm that induces receptor dimerization. Because the libraries used a common light chain, we were able to assemble a biparatopic antibody that incorporated both antigen-binding sites and thus targeted both epitopes on EGFR. We showed that the antibody that targeted the dimerization arm inhibited the growth of cancer cell lines that were resistant to the antibody that targeted the EGF-binding site. Moreover, the biparatopic antibody was more potent than the monoparatopic antibodies. Our results suggest that antibodies that target the dimerization arm of EGFR may be effective across a broader range of cancers than antibodies that target the EGF-binding site, and that a biparatopic antibody targeting both epitopes may be the most effective therapeutic for inhibiting aberrant EGFR signaling in cancer.

PubMed: 42178617
DOI: 10.1002/pro.70645

Experimental method

X-RAY DIFFRACTION (2.4 Å)