9UBI

Crystal structure of FERONIA kinase and Ferovicin inhibitor

Summary for 9UBI

• Entry DOI: 10.2210/pdb9ubi/pdb
• Descriptor: Receptor-like protein kinase FERONIA, 1-[6-(3,5-dichloro-4-hydroxyphenyl)-4-({trans-4-[(dimethylamino)methyl]cyclohexyl}amino)-1,5-naphthyridin-3-yl]ethanone (3 entities in total)
• Functional Keywords: natural product biosynthetic enzyme, plant protein
• Biological source: Arabidopsis thaliana (thale cress)
• Total number of polymer chains: 2
• Total formula weight: 74971.34

Authors

Sun, M.Z.,Fan, J.P.,Lei, X.G. (deposition date: 2025-04-03, release date: 2025-10-29, Last modification date: 2025-11-19)

Primary citation

Sun, M.,Lu, B.,Yang, Y.,Fan, J.,Ren, W.,Chu, X.,Gao, Y.,Wu, J.,Wang, J.,Ke, H.,Liu, Z.,Dai, S.,Lei, X.,Li, C.
Unveiling FERONIA receptor kinase-mediated cellular mechanisms with a small-molecule inhibitor.
Proc.Natl.Acad.Sci.USA, 122:e2515322122-e2515322122, 2025

PubMed Abstract: Since its initial identification as the receptor for Rapid Alkalinization Factor 1 (RALF1), FERONIA (FER) receptor kinase has emerged as a central signaling hub coordinating plant development, stress adaptation, and immune responses. Nevertheless, fundamental questions persist regarding the precise mechanisms of FER-mediated signal transduction and its context-dependent functional specialization in multicellular processes. Here, we develop Ferovicin (FRV), a small-molecule inhibitor that specifically disrupts FER kinase activity, thereby enabling mechanistic dissection of FER. Cocrystallization and mutational analysis show that FRV selectively binds to the ATP-binding pocket of the kinase domain of FER and inhibits its kinase activity. Assisted by the FRV tool and quantitative phosphoproteomics, we characterized a series of signaling pathways and networks regulated by RALF1 and FER. Notably, our analysis reveals that RALF1 activates FER through phosphorylation at Ser695, which subsequently inhibits H-ATPase1/2 via phosphorylation at Ser899. This mechanism leads to apoplastic alkalinization and regulates cell expansion in the root meristem. Given the conservation of FRV binding sites in FER proteins across land plant species, FRV will serve as a valuable tool for dissecting FER signaling mechanisms as well as facilitating agricultural applications.

PubMed: 41196348
DOI: 10.1073/pnas.2515322122

Experimental method

X-RAY DIFFRACTION (1.9 Å)