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9NU4

Structure of MurJ in complex with single gene lysis protein from phage M

Summary for 9NU4
Entry DOI10.2210/pdb9nu4/pdb
EMDB information49796
DescriptorLipid II flippase MurJ, Lysis protein (2 entities in total)
Functional Keywordslipid ii flippase, phage single gene lysis proteins, peptidoglycan biosynthesis, transport protein
Biological sourceEscherichia coli K-12
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Total number of polymer chains2
Total formula weight73294.00
Authors
Li, Y.E.,Clemons, W.M. (deposition date: 2025-03-19, release date: 2026-02-11, Last modification date: 2026-03-11)
Primary citationLi, Y.E.,Antillon, S.F.,Baron, G.F.,Chamakura, K.,Young, R.,Clemons Jr., W.M.
Convergent MurJ flippase inhibition by phage lysis proteins.
Nature, 2026
Cited by
PubMed Abstract: Antimicrobial drug resistance poses a global health challenge that necessitates the identification of new druggable targets. The essential lipid II flippase MurJ is a promising yet underexplored antimicrobial target in bacterial cell wall biosynthesis. The only known inhibitors of Gram-negative (diderm) MurJ are the single-gene lysis proteins (Sgls) from the lytic single-strand RNA phages M (Sgl) and PP7 (Sgl). Sgl and Sgl have distinct evolutionary origins and share no sequence similarity. Here we describe a common mechanism of MurJ inhibition by these phage-encoded Sgls. We determined the structures of MurJ-bound Sgl and Sgl and discovered a third distinct MurJ-targeting Sgl from the predicted phage Changjiang3 (Sgl) that we also characterized structurally. Our findings demonstrate that all three Sgls evolved convergently to trap MurJ in a periplasm-open conformation through a common MurJ interface, revealing a pathway for drug design.
PubMed: 41741639
DOI: 10.1038/s41586-026-10163-w
PDB entries with the same primary citation
Experimental method
ELECTRON MICROSCOPY (3.6 Å)
Structure validation

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