9N50

Crosslinked Crystal Structure of Human Mitochondrial Ketosynthase, OXSM, and Crosslinker-crypto Human Mitochondrial Acyl Carrier Protein, C8aBr-mACP

This is a non-PDB format compatible entry.

Summary for 9N50

• Entry DOI: 10.2210/pdb9n50/pdb
• Descriptor: 3-oxoacyl-[acyl-carrier-protein] synthase, mitochondrial, Acyl carrier protein, mitochondrial, N~3~-[(2R)-2-hydroxy-3,3-dimethyl-4-(phosphonooxy)butanoyl]-N-(2-octanamidoethyl)-beta-alaninamide, ... (4 entities in total)
• Functional Keywords: crosslinked complex, human mitochondria, type ii fatty acid biosynthesis, ketosynthase, biosynthetic protein
• Biological source: Homo sapiens (human); More
• Total number of polymer chains: 3
• Total formula weight: 100453.91

Authors

Suo, Y.,Jiang, Z.,Heberlig, G.W.,Wang, E.Y.,Chen, A.,Sankaran, B.,La Clair, J.J.,Burkart, M.D. (deposition date: 2025-02-03, release date: 2025-09-24)

Primary citation

Suo, Y.,Jiang, Z.,Heberlig, G.W.,Wang, E.Y.,Sankaran, B.,La Clair, J.J.,Burkart, M.D.
Role of Human Mitochondrial Ketosynthase in Long-Chain Fatty Acid Biosynthesis.
J.Am.Chem.Soc., 147:33248-33255, 2025

PubMed Abstract: Although ketosynthases in bacterial type II fatty acid biosynthesis have been extensively studied, the human mitochondrial ketosynthase, OXSM, remains incompletely characterized. Contrary to the assumption that the role of mitochondrial fatty acid biosynthesis is limited to the production of the lipoic acid precursor octanoate, recent studies suggest an ability to produce longer chain fatty acids. Here, we employ covalent, dual site-selective cross-linkers to trap the interactions between OXSM and its mitochondrial acyl carrier protein partner, mACP. Two high-resolution crystal structures that capture OXSM bound to mACP provide molecular details of the conformational changes that guide the chain elongation process. We identify key protein • protein and protein • substrate interactions that regulate the transacylation and condensation steps associated with this process. We also observe a conserved gating mechanism previously identified in bacterial type II ketosynthases. Complemented by site-directed mutagenesis and activity analyses, these findings provide detailed insight into the selectivity of the OXSM substrate. This study explores how the OXSM can elongate fatty acids larger than eight carbons, mirroring that of its bacterial type II progenitor.

PubMed: 40891531
DOI: 10.1021/jacs.5c10318

Experimental method

X-RAY DIFFRACTION (2.5 Å)