9H9E

Cryo-EM structure of the human GABAA receptor alpha1 subunit in complex with the assembly factor NACHO/TMEM35A

Summary for 9H9E

• Entry DOI: 10.2210/pdb9h9e/pdb
• EMDB information: 51963
• Descriptor: Gamma-aminobutyric acid receptor subunit alpha-1, Novel acetylcholine receptor chaperone, alpha-D-mannopyranose-(1-3)-[alpha-D-mannopyranose-(1-6)]beta-D-mannopyranose-(1-3)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, ... (7 entities in total)
• Functional Keywords: assembly intermediate, ion channel, chaperone, neurotransmitter receptor, membrane protein biogenesis, membrane protein
• Biological source: Homo sapiens (human); More
• Total number of polymer chains: 4
• Total formula weight: 155402.99

Authors

Hooda, Y.,Sente, A.,Judy, R.M.,Smalinskaite, L.,Peak-Chew, S.,Naydenova, K.,Malinauskas, T.,Hardwick, S.W.,Chirgadze, D.Y.,Aricescu, A.R.,Hegde, R.S. (deposition date: 2024-10-30, release date: 2024-12-04)

Primary citation

Hooda, Y.,Sente, A.,Judy, R.M.,Smalinskaite, L.,Chew, S.P.,Naydenova, K.,Malinauskas, T.,Hardwick, S.W.,Chirgadze, D.Y.,Aricescu, A.R.,Hegde, R.S.
Mechanism of NACHO-mediated assembly of pentameric ligand-gated ion channels.
Biorxiv, 2024

PubMed Abstract: Pentameric ligand-gated ion channels (pLGICs) are cell surface receptors of crucial importance for animal physiology. This diverse protein family mediates the ionotropic signals triggered by major neurotransmitters and includes γ-aminobutyric acid receptors (GABARs) and acetylcholine receptors (nAChRs). Receptor function is fine-tuned by a myriad of endogenous and pharmacological modulators. A functional pLGIC is built from five homologous, sometimes identical, subunits, each containing a β-scaffold extracellular domain (ECD), a four-helix transmembrane domain (TMD) and intracellular loops of variable length. Although considerable progress has been made in understanding pLGICs in structural and functional terms, the molecular mechanisms that enable their assembly at the endoplasmic reticulum (ER) in a vast range of potential subunit configurations remain unknown. Here, we identified candidate pLGICs assembly factors selectively associated with an unassembled GABAR subunit. Focusing on one of the candidates, we determined the cryo-EM structure of an assembly intermediate containing two α1 subunits of GABAR each bound to an ER-resident membrane protein NACHO. The structure showed how NACHO shields the principal (+) transmembrane interface of α1 subunits containing an immature extracellular conformation. Crosslinking and structure-prediction revealed an adjacent surface on NACHO for β2 subunit interactions to guide stepwise oligimerisation. Mutations of either subunit-interacting surface on NACHO also impaired the formation of homopentameric α7 nAChRs, pointing to a generic framework for pLGIC assembly. Our work provides the foundation for understanding the regulatory principles underlying pLGIC structural diversity.

PubMed: 39553992
DOI: 10.1101/2024.10.28.620708

Experimental method

ELECTRON MICROSCOPY (3.6 Å)