9GC7
Mineralocorticoid receptor in complex with acylurea antagonists.
This is a non-PDB format compatible entry.
Summary for 9GC7
| Entry DOI | 10.2210/pdb9gc7/pdb |
| Descriptor | Mineralocorticoid receptor, Nuclear receptor coactivator 1, (4S)-2-METHYL-2,4-PENTANEDIOL, ... (6 entities in total) |
| Functional Keywords | mineralocorticoid r, nuclear hormone receptor, steroid receptor, transcription |
| Biological source | Homo sapiens (human) More |
| Total number of polymer chains | 2 |
| Total formula weight | 36858.14 |
| Authors | Edman, K.,Aagaard, A.,Barlind, L. (deposition date: 2024-08-01, release date: 2026-02-18, Last modification date: 2026-05-13) |
| Primary citation | Nordqvist, A.,Lindmark, B.,Granberg, K.L.,Aagaard, A.,Barlind, L.,Fredenwall, M.,Hansson, E.,Hogner, A.,Ivarsson, I.,Johansson, M.,Lindberg, J.,Liu, D.,Sorensen, H.,Tangefjord, S.,William-Olsson, L.,Atilaw, Y.,Yuan, Z.Q.,Bamberg, K.,O'Mahony, G.,Edman, K. Mineralocorticoid Receptor Antagonists With an Acylurea as a Key Polar Interaction Motif. Chemmedchem, 21:e202501047-e202501047, 2026 Cited by PubMed Abstract: Mineralocorticoid receptor (MR) antagonists play a vital role in the management of conditions such as heart failure and hypertension. The recent approval of finerenone for diabetic kidney disease, along with expanding opportunities to treat chronic kidney disease and heart failure with preserved ejection fraction has led to a continued interest in MR antagonism. This article describes the identification and initial optimization of MR antagonists based on a phenylglycine scaffold containing an acylurea motif. Optimization efforts aimed at enhancing MR potency and DMPK properties revealed that replacing the phenylglycine scaffold with l-alanine avoided a risk of racemization at the stereocenter. The most potent compound exhibited an MR binding affinity of pK = 9.3 and a potency in human MR reporter gene assay of pIC = 8.4. X-ray crystallography of a protein-ligand complex structure with an l-alanine based compound revealed an internal hydrogen bond imposing a cyclic conformation on the acylurea, which in turn formed a bidentate hydrogen bond interaction with the side chain of Asn770, a key polar interaction site in MR for endogenous as well as synthetic ligands. Further lead generation efforts identified two compounds with suitable in vivo PK properties allowing assessment of their effect on acute urinary electrolyte excretion. PubMed: 42060830DOI: 10.1002/cmdc.202501047 PDB entries with the same primary citation |
| Experimental method | X-RAY DIFFRACTION (1.46 Å) |
Structure validation
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