9DIE

Structure of phospholipase D BetaIB1i from Sicarius terrosus venom, H47N mutant bound to product and substrate sphingolipids at 1.85 A resolution

This is a non-PDB format compatible entry.

Summary for 9DIE

• Entry DOI: 10.2210/pdb9die/pdb
• Descriptor: Dermonecrotic toxin StSicTox-betaIB1i, 2-aminoethyl (2S,3R,4E)-2-dodecanamido-3-hydroxyheptadec-4-en-1-yl hydrogen (S)-phosphate, N-{(2S,4R,5S)-2-hydroxy-2-oxo-4-[(1E,7Z)-tetradeca-1,7-dien-1-yl]-1,3,2lambda~5~-dioxaphosphinan-5-yl}dodecanamide, ... (7 entities in total)
• Functional Keywords: toxin sphingolipid spider venom interfacial binding site, lyase
• Biological source: Sicarius terrosus
• Total number of polymer chains: 2
• Total formula weight: 72324.31

Authors

Sundman, A.K.,Montfort, W.R.,Binford, G.J.,Cordes, M.H. (deposition date: 2024-09-05, release date: 2025-09-10)

• Primary citation: Sundman, A.K.,Montfort, W.R.,Binford, G.J.,Cordes, M.H.; Structure of phospholipase D BetaIB1i from Sicarius terrosus venom, H47N mutant bound to product and substrate sphingolipids at 1.85 A resolution; To Be Published,

Experimental method

X-RAY DIFFRACTION (1.85 Å)