9BZ4

Crystal structure of the C2 and GAP domains of human p120RasGAP

Summary for 9BZ4

• Entry DOI: 10.2210/pdb9bz4/pdb
• Descriptor: Ras GTPase-activating protein 1 (2 entities in total)
• Functional Keywords: ras, c2 domain, gap, rasgap, rasa1, signaling protein
• Biological source: Homo sapiens (human)
• Total number of polymer chains: 4
• Total formula weight: 214282.81

Authors

Paul, M.E.,Boggon, T.J. (deposition date: 2024-05-24, release date: 2025-01-22, Last modification date: 2025-02-12)

Primary citation

Paul, M.E.,Chen, D.,Vish, K.J.,Lartey, N.L.,Hughes, E.,Freeman, Z.T.,Saunders, T.L.,Stiegler, A.L.,King, P.D.,Boggon, T.J.
The C2 domain augments Ras GTPase-activating protein catalytic activity.
Proc.Natl.Acad.Sci.USA, 122:e2418433122-e2418433122, 2025

PubMed Abstract: Regulation of Ras GTPases by GTPase-activating proteins (GAPs) is essential for their normal signaling. Nine of the ten GAPs for Ras contain a C2 domain immediately proximal to their canonical GAP domain, and in RasGAP (p120GAP, p120RasGAP; ) mutation of this domain is associated with vascular malformations in humans. Here, we show that the C2 domain of RasGAP is required for full catalytic activity toward Ras. Analyses of the RasGAP C2-GAP crystal structure, AlphaFold models, and sequence conservation reveal direct C2 domain interaction with the Ras allosteric lobe. This is achieved by an evolutionarily conserved surface centered around RasGAP residue R707, point mutation of which impairs the catalytic advantage conferred by the C2 domain in vitro. In mice, mutation phenocopies the vascular and signaling defects resulting from constitutive disruption of the gene. In SynGAP, mutation of the equivalent conserved C2 domain surface impairs catalytic activity. Our results indicate that the C2 domain is required to achieve full catalytic activity of GAPs for Ras.

PubMed: 39899710
DOI: 10.1073/pnas.2418433122

Experimental method

X-RAY DIFFRACTION (2.45 Å)