8JRC

Crystal structure of the GAF domain of the transcriptional activator NifA

Summary for 8JRC

• Entry DOI: 10.2210/pdb8jrc/pdb
• Descriptor: Nif-specific regulatory protein (2 entities in total)
• Functional Keywords: transcriptional activator, bacterial enhancer-binding proteins, transcription
• Biological source: Rhodopseudomonas palustris
• Total number of polymer chains: 2
• Total formula weight: 46031.04

Authors

Zeng, Y.,Guo, L.,Li, D.F. (deposition date: 2023-06-16, release date: 2024-06-19, Last modification date: 2025-07-02)

Primary citation

Zeng, Y.,Guo, L.,Gao, Y.,Cui, L.,Wang, M.,Huang, L.,Jiang, M.,Liu, Y.,Zhu, Y.,Xiang, H.,Li, D.F.,Zheng, Y.
Formation of NifA-P II complex represses ammonium-sensitive nitrogen fixation in diazotrophic proteobacteria lacking NifL.
Cell Rep, 43:114476-114476, 2024

PubMed Abstract: Biological nitrogen fixation catalyzed by nitrogenase contributes greatly to the global nitrogen cycle. Nitrogenase expression is subject to regulation in response to nitrogen availability. However, the mechanism through which the transcriptional activator NifA regulates nitrogenase expression by interacting with P nitrogen regulatory proteins remains unclear in diazotrophic proteobacteria lacking NifL. Here, we demonstrate that in Rhodopseudomonas palustris grown with ammonium, NifA bound deuridylylated P proteins to form an inactive NifA-P complex, thereby inhibiting the expression of nitrogenase. Upon nitrogen limitation, the dissociation of uridylylated P proteins from NifA resulted in the full restoration of NifA activity, and, simultaneously, uridylylation of the significantly up-regulated P protein GlnK2 led to the increased expression of NifA in R. palustris. This insight into how NifA interacts with P proteins and controls nitrogenase expression sets the stage for creating highly efficient diazotrophs, reducing the need for energy-intensive chemical fertilizers and helping to diminish carbon emissions.

PubMed: 38985671
DOI: 10.1016/j.celrep.2024.114476

Experimental method

X-RAY DIFFRACTION (2.3 Å)