8DPB

MeaB in complex with the cobalamin-binding domain of its target mutase with GMPPCP bound

Summary for 8DPB

• Entry DOI: 10.2210/pdb8dpb/pdb
• Descriptor: Methylmalonyl-CoA mutase accessory protein, Methylmalonyl-CoA mutase, alpha subunit, PHOSPHOMETHYLPHOSPHONIC ACID GUANYLATE ESTER, ... (6 entities in total)
• Functional Keywords: metalloenzyme maturation, complex, g-protein chaperone, cobalamin, chaperone
• Biological source: Methylorubrum extorquens AM1; More
• Total number of polymer chains: 4
• Total formula weight: 110725.82

Authors

Vaccaro, F.A.,Born, D.A.,Drennan, C.L. (deposition date: 2022-07-15, release date: 2023-03-01, Last modification date: 2024-04-03)

Primary citation

Vaccaro, F.A.,Born, D.A.,Drennan, C.L.
Structure of metallochaperone in complex with the cobalamin-binding domain of its target mutase provides insight into cofactor delivery.
Proc.Natl.Acad.Sci.USA, 120:e2214085120-e2214085120, 2023

PubMed Abstract: G-protein metallochaperone MeaB in bacteria [methylmalonic aciduria type A (MMAA) in humans] is responsible for facilitating the delivery of adenosylcobalamin (AdoCbl) to methylmalonyl-CoA mutase (MCM), the only AdoCbl-dependent enzyme in humans. Genetic defects in the switch III region of MMAA lead to the genetic disorder methylmalonic aciduria in which the body is unable to process certain lipids. Here, we present a crystal structure of MeaB bound to a nonhydrolyzable guanosine triphosphate (GTP) analog guanosine-5'-[(β,γ)-methyleno]triphosphate (GMPPCP) with the Cbl-binding domain of its target mutase enzyme (MCM). This structure provides an explanation for the stimulation of the GTP hydrolyase activity of MeaB afforded by target protein binding. We find that upon MCM association, one protomer of the MeaB dimer rotates ~180°, such that the inactive state of MeaB is converted to an active state in which the nucleotide substrate is now surrounded by catalytic residues. Importantly, it is the switch III region that undergoes the largest change, rearranging to make direct contacts with the terminal phosphate of GMPPCP. These structural data additionally provide insights into the molecular basis by which this metallochaperone contributes to AdoCbl delivery without directly binding the cofactor. Our data suggest a model in which GTP-bound MeaB stabilizes a conformation of MCM that is open for AdoCbl insertion, and GTP hydrolysis, as signaled by switch III residues, allows MCM to close and trap its cofactor. Substitutions of switch III residues destabilize the active state of MeaB through loss of protein:nucleotide and protein:protein interactions at the dimer interface, thus uncoupling GTP hydrolysis from AdoCbl delivery.

PubMed: 36787360
DOI: 10.1073/pnas.2214085120

Experimental method

X-RAY DIFFRACTION (2.72 Å)