7Y6U

Symmetry-expanded and locally refined protomer structure of IPEC-J2 cell-derived PEDV PT52 S with a CTD-close conformation

Summary for 7Y6U

Entry DOI	10.2210/pdb7y6u/pdb
EMDB information	33648
Descriptor	Spike glycoprotein, beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-[alpha-L-fucopyranose-(1-6)]2-acetamido-2-deoxy-beta-D-glucopyranose, alpha-D-mannopyranose-(1-3)-[alpha-D-mannopyranose-(1-6)]beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, ... (7 entities in total)
Functional Keywords	pedv, spike, glycoprotein, viral protein
Biological source	Porcine epidemic diarrhea virus
Total number of polymer chains	1
Total formula weight	161593.94
Authors	Hsu, S.T.D.,Draczkowski, P.,Wang, Y.S. (deposition date: 2022-06-21, release date: 2022-08-03, Last modification date: 2022-09-14)
Primary citation	Huang, C.Y.,Draczkowski, P.,Wang, Y.S.,Chang, C.Y.,Chien, Y.C.,Cheng, Y.H.,Wu, Y.M.,Wang, C.H.,Chang, Y.C.,Chang, Y.C.,Yang, T.J.,Tsai, Y.X.,Khoo, K.H.,Chang, H.W.,Hsu, S.D. In situ structure and dynamics of an alphacoronavirus spike protein by cryo-ET and cryo-EM. Nat Commun, 13:4877-4877, 2022 Cited by PubMed: 35986008 DOI: 10.1038/s41467-022-32588-3 PDB entries with the same primary citation
Experimental method	ELECTRON MICROSCOPY (3.2 Å)

Structure validation