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7TN0

SARS-CoV-2 Omicron RBD in complex with human ACE2 and S304 Fab and S309 Fab

Summary for 7TN0
Entry DOI10.2210/pdb7tn0/pdb
Related7TLY 7TLZ 7TM0 7TNO
EMDB information25990 25991 25992 25993
DescriptorS309 light chain, 2-acetamido-2-deoxy-beta-D-glucopyranose, S309 heavy chain, ... (11 entities in total)
Functional Keywordscovid-19, sars-cov-2, neutralizing monoclonal antibody, sars-cov-2 receptor human ace2, viral protein-immune system complex, structural genomics, seattle structural genomics center for infectious disease, ssgcid, viral protein/immune system
Biological sourceHomo sapiens
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Total number of polymer chains12
Total formula weight382458.66
Authors
Primary citationMcCallum, M.,Czudnochowski, N.,Rosen, L.E.,Zepeda, S.K.,Bowen, J.E.,Walls, A.C.,Hauser, K.,Joshi, A.,Stewart, C.,Dillen, J.R.,Powell, A.E.,Croll, T.I.,Nix, J.,Virgin, H.W.,Corti, D.,Snell, G.,Veesler, D.
Structural basis of SARS-CoV-2 Omicron immune evasion and receptor engagement.
Science, 375:864-868, 2022
Cited by
PubMed Abstract: The severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2) Omicron variant of concern evades antibody-mediated immunity that comes from vaccination or infection with earlier variants due to accumulation of numerous spike mutations. To understand the Omicron antigenic shift, we determined cryo-electron microscopy and x-ray crystal structures of the spike protein and the receptor-binding domain bound to the broadly neutralizing sarbecovirus monoclonal antibody (mAb) S309 (the parent mAb of sotrovimab) and to the human ACE2 receptor. We provide a blueprint for understanding the marked reduction of binding of other therapeutic mAbs that leads to dampened neutralizing activity. Remodeling of interactions between the Omicron receptor-binding domain and human ACE2 likely explains the enhanced affinity for the host receptor relative to the ancestral virus.
PubMed: 35076256
DOI: 10.1126/science.abn8652
PDB entries with the same primary citation
Experimental method
X-RAY DIFFRACTION (2.85 Å)
Structure validation

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PDB entries from 2024-11-06

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