6VLR

BG505 SOSIP.v5.2 in complex with rhesus macaque Fab RM20E1 and PGT122 Fab

Summary for 6VLR

• Entry DOI: 10.2210/pdb6vlr/pdb
• EMDB information: 21232
• Descriptor: Envelope glycoprotein gp120, alpha-D-mannopyranose-(1-2)-alpha-D-mannopyranose-(1-3)-[alpha-D-mannopyranose-(1-6)]beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, alpha-D-mannopyranose-(1-3)-beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, ... (12 entities in total)
• Functional Keywords: hiv, antibody, fab, vaccine, viral protein, viral protein-immune system complex, viral protein/immune system
• Biological source: Human immunodeficiency virus 1; More
• Total number of polymer chains: 14
• Total formula weight: 334874.94

Authors

Cottrell, C.A.,Ward, A.B. (deposition date: 2020-01-24, release date: 2020-06-24, Last modification date: 2024-10-09)

Primary citation

Cottrell, C.A.,van Schooten, J.,Bowman, C.A.,Yuan, M.,Oyen, D.,Shin, M.,Morpurgo, R.,van der Woude, P.,van Breemen, M.,Torres, J.L.,Patel, R.,Gross, J.,Sewall, L.M.,Copps, J.,Ozorowski, G.,Nogal, B.,Sok, D.,Rakasz, E.G.,Labranche, C.,Vigdorovich, V.,Christley, S.,Carnathan, D.G.,Sather, D.N.,Montefiori, D.,Silvestri, G.,Burton, D.R.,Moore, J.P.,Wilson, I.A.,Sanders, R.W.,Ward, A.B.,van Gils, M.J.
Mapping the immunogenic landscape of near-native HIV-1 envelope trimers in non-human primates.
Plos Pathog., 16:e1008753-e1008753, 2020

PubMed Abstract: The induction of broad and potent immunity by vaccines is the key focus of research efforts aimed at protecting against HIV-1 infection. Soluble native-like HIV-1 envelope glycoproteins have shown promise as vaccine candidates as they can induce potent autologous neutralizing responses in rabbits and non-human primates. In this study, monoclonal antibodies were isolated and characterized from rhesus macaques immunized with the BG505 SOSIP.664 trimer to better understand vaccine-induced antibody responses. Our studies reveal a diverse landscape of antibodies recognizing immunodominant strain-specific epitopes and non-neutralizing neo-epitopes. Additionally, we isolated a subset of mAbs against an epitope cluster at the gp120-gp41 interface that recognize the highly conserved fusion peptide and the glycan at position 88 and have characteristics akin to several human-derived broadly neutralizing antibodies.

PubMed: 32866207
DOI: 10.1371/journal.ppat.1008753

Experimental method

ELECTRON MICROSCOPY (4.42 Å)