6MGL

Crystal structure of the catalytic domain from GH74 enzyme PoGH74 from Paenibacillus odorifer, D60A mutant in complex with XXLG and XGXXLG xyloglucan

Summary for 6MGL

• Entry DOI: 10.2210/pdb6mgl/pdb
• Related: 6MGJ 6MGK
• Descriptor: Xyloglucanase, alpha-D-xylopyranose-(1-6)-beta-D-glucopyranose-(1-4)-[alpha-D-xylopyranose-(1-6)]beta-D-glucopyranose-(1-4)-[beta-D-galactopyranose-(1-2)-alpha-D-xylopyranose-(1-6)]beta-D-glucopyranose-(1-4)-beta-D-glucopyranose, alpha-D-xylopyranose-(1-6)-beta-D-glucopyranose-(1-4)-beta-D-glucopyranose-(1-4)-[alpha-D-xylopyranose-(1-6)]beta-D-glucopyranose-(1-4)-[alpha-D-xylopyranose-(1-6)]beta-D-glucopyranose-(1-4)-[beta-D-galactopyranose-(1-2)-alpha-D-xylopyranose-(1-6)]beta-D-glucopyranose-(1-4)-beta-D-glucopyranose, ... (8 entities in total)
• Functional Keywords: glycosylhydrolase, hydrolase, family gh74, xyloglucanase, paenibacillus odorifer, xyloglucan
• Biological source: Paenibacillus odorifer
• Total number of polymer chains: 1
• Total formula weight: 84100.64

Authors

Stogios, P.J.,Skarina, T.,Arnal, G.,Watanabe, N.,Brumer, H.,Savchenko, A. (deposition date: 2018-09-14, release date: 2019-01-23, Last modification date: 2023-10-11)

Primary citation

Arnal, G.,Stogios, P.J.,Asohan, J.,Skarina, T.,Savchenko, A.,Brumer, H.
Structural enzymology reveals the molecular basis of substrate regiospecificity and processivity of an exemplar bacterial glycoside hydrolase family 74endo-xyloglucanase.
Biochem. J., 475:3963-3978, 2018

PubMed Abstract: produces a single multimodular enzyme containing a glycoside hydrolase (GH) family 74 module (AIQ73809). Recombinant production and characterization of the GH74 module (GH74) revealed a highly specific, processive -xyloglucanase that can hydrolyze the polysaccharide backbone at both branched and unbranched positions. X-ray crystal structures obtained for the free enzyme and oligosaccharide complexes evidenced an extensive hydrophobic binding platform - the first in GH74 extending from subsites -4 to +6 - and unique mobile active-site loops. Site-directed mutagenesis revealed that glycine-476 was uniquely responsible for the promiscuous backbone-cleaving activity of GH74; replacement with tyrosine, which is conserved in many GH74 members, resulted in exclusive hydrolysis at unbranched glucose units. Likewise, systematic replacement of the hydrophobic platform residues constituting the positive subsites indicated their relative contributions to the processive mode of action. Specifically, W347 (+3 subsite) and W348 (+5 subsite) are essential for processivity, while W406 (+2 subsite) and Y372 (+6 subsite) are not strictly essential, but aid processivity.

PubMed: 30463871
DOI: 10.1042/BCJ20180763

Experimental method

X-RAY DIFFRACTION (1.5 Å)