6HD7

Cryo-EM structure of the ribosome-NatA complex

これはPDB形式変換不可エントリーです。

6HD7 の概要

• エントリーDOI: 10.2210/pdb6hd7/pdb
• 関連するPDBエントリー: 4kvm 4xnh 5gak
• EMDBエントリー: 0202
• 分子名称: Saccharomyces cerevisiae S288C 35S pre-ribosomal RNA (RDN37-1), miscRNA, 60S ribosomal protein L4-A, 60S ribosomal protein L5, ... (52 entities in total)
• 機能のキーワード: n-terminal acetylation, protein modification, ribosome, expansion segments, translation
• 由来する生物種: Saccharomyces cerevisiae; 詳細
• タンパク質・核酸の鎖数: 51
• 化学式量合計: 2146182.65

構造登録者

Knorr, A.G.,Becker, T.,Beckmann, R. (登録日: 2018-08-17, 公開日: 2018-12-19, 最終更新日: 2025-07-09)

主引用文献

Knorr, A.G.,Schmidt, C.,Tesina, P.,Berninghausen, O.,Becker, T.,Beatrix, B.,Beckmann, R.
Ribosome-NatA architecture reveals that rRNA expansion segments coordinate N-terminal acetylation.
Nat. Struct. Mol. Biol., 26:35-39, 2019

PubMed Abstract: The majority of eukaryotic proteins are N-terminally α-acetylated by N-terminal acetyltransferases (NATs). Acetylation usually occurs co-translationally and defects have severe consequences. Nevertheless, it is unclear how these enzymes act in concert with the translating ribosome. Here, we report the structure of a native ribosome-NatA complex from Saccharomyces cerevisiae. NatA (comprising Naa10, Naa15 and Naa50) displays a unique mode of ribosome interaction by contacting eukaryotic-specific ribosomal RNA expansion segments in three out of four binding patches. Thereby, NatA is dynamically positioned directly underneath the ribosomal exit tunnel to facilitate modification of the emerging nascent peptide chain. Methionine amino peptidases, but not chaperones or signal recognition particle, would be able to bind concomitantly. This work assigns a function to the hitherto enigmatic ribosomal RNA expansion segments and provides mechanistic insights into co-translational protein maturation by N-terminal acetylation.

PubMed: 30559462
DOI: 10.1038/s41594-018-0165-y

実験手法

ELECTRON MICROSCOPY (3.4 Å)