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6HD7

Cryo-EM structure of the ribosome-NatA complex

This is a non-PDB format compatible entry.
Entity
Entity IDChain IDDescriptionTypeChain lengthFormula weightNumber of moleculesDB Name (Accession)Biological sourceDescriptive keywords
1A
(1)
Saccharomyces cerevisiae S288C 35S pre-ribosomal RNA (RDN37-1), miscRNApolymer33961097493.91GenBank (831416132)Saccharomyces cerevisiae
2B
(3)
5S rRNApolymer12138951.11Saccharomyces cerevisiae
3C
(4)
5.8S rRNApolymer15850682.91GenBank (1398978137)Saccharomyces cerevisiae
4D
(A)
tRNApolymer7624378.41Saccharomyces cerevisiae
5E
(B)
P-site tRNApolymer7724815.71Saccharomyces cerevisiae
6F
(C)
60S ribosomal protein L42-Apolymer10612246.71UniProt (P0CX27)
Pfam (PF00935)
Saccharomyces cerevisiaeL41,Large ribosomal subunit protein eL42-A,YL27,YP44
7G
(D)
60S ribosomal protein L43-Apolymer9210113.01UniProt (P0CX25)
Pfam (PF01780)
Saccharomyces cerevisiaeL37a,Large ribosomal subunit protein eL43-A,YL35
8H
(E)
60S ribosomal protein L2-Apolymer25427463.61UniProt (P0CX45)
Pfam (PF00181)
Pfam (PF03947)
Saccharomyces cerevisiaeL5,Large ribosomal subunit protein uL2-A,RP8,YL6
9I
(F)
60S ribosomal protein L3polymer38743850.81UniProt (P14126)
Pfam (PF00297)
Saccharomyces cerevisiaeLarge ribosomal subunit protein uL3,Maintenance of killer protein 8,RP1,Trichodermin resistance protein,YL1
10J
(G)
60S ribosomal protein L4-Apolymer36239159.11UniProt (P10664)
Pfam (PF00573)
Pfam (PF14374)
Saccharomyces cerevisiaeL2,Large ribosomal subunit protein uL4-A,RP2,YL2
11K
(H)
60S ribosomal protein L5polymer29733764.81UniProt (P26321)
Pfam (PF17144)
Pfam (PF14204)
Saccharomyces cerevisiaeL1,L1a,Large ribosomal subunit protein uL18,Ribosomal 5S RNA-binding protein,YL3
12L
(I)
60S ribosomal protein L6-Apolymer17620000.61UniProt (Q02326)
Pfam (PF01159)
Saccharomyces cerevisiaeL17,Large ribosomal subunit protein eL6-A,RP18,YL16
13M
(J)
60S ribosomal protein L7-Apolymer24427686.31UniProt (P05737)
Pfam (PF08079)
Pfam (PF00327)
Saccharomyces cerevisiaeL6,Large ribosomal subunit protein uL30-A,RP11,YL8
14N
(K)
60S ribosomal protein L8-Apolymer25628175.81UniProt (P17076)
Pfam (PF01248)
Saccharomyces cerevisiaeL4,L4-2,L7a-1,Large ribosomal subunit protein eL8-A,Maintenance of killer protein 7,RP6,YL5
15O
(L)
60S ribosomal protein L9-Apolymer19121605.11UniProt (P05738)
Pfam (PF00347)
Saccharomyces cerevisiaeL8,Large ribosomal subunit protein uL6-A,RP24,YL11
16P
(M)
60S ribosomal protein L11-Apolymer17419755.71UniProt (P0C0W9)
Pfam (PF00281)
Pfam (PF00673)
Saccharomyces cerevisiaeL16,Large ribosomal subunit protein uL5-A,RP39,YL22
17Q
(N)
60S ribosomal protein L13-Apolymer19922604.21UniProt (Q12690)
Pfam (PF01294)
Saccharomyces cerevisiaeLarge ribosomal subunit protein eL13-A
18R
(O)
60S ribosomal protein L14-Apolymer13815195.11UniProt (P36105)
Pfam (PF00467)
Pfam (PF01929)
Saccharomyces cerevisiaeLarge ribosomal subunit protein eL14-A
19S
(P)
60S ribosomal protein L15-Apolymer20424482.41UniProt (P05748)
Pfam (PF00827)
Saccharomyces cerevisiaeL13,Large ribosomal subunit protein eL15-A,RP15R,YL10,YP18
20T
(Q)
60S ribosomal protein L16-Apolymer19922247.21UniProt (P26784)
Pfam (PF00572)
Saccharomyces cerevisiaeL13a,L21,Large ribosomal subunit protein uL13-A,RP22,YL15
21U
(R)
60S ribosomal protein L17-Apolymer18420589.51UniProt (P05740)
Pfam (PF00237)
Saccharomyces cerevisiaeL20A,Large ribosomal subunit protein uL22-A,YL17
22V
(S)
60S ribosomal protein L18-Apolymer18620609.31UniProt (P0CX49)
Pfam (PF17135)
Saccharomyces cerevisiaeLarge ribosomal subunit protein eL18-A,RP28
23W
(T)
60S ribosomal protein L19-Apolymer18921762.31UniProt (P0CX82)
Pfam (PF01280)
Saccharomyces cerevisiaeL23,Large ribosomal subunit protein eL19-A,RP15L,RP33,YL14
24X
(U)
60S ribosomal protein L20-Apolymer17220478.91UniProt (P0CX23)
Pfam (PF01775)
Saccharomyces cerevisiaeL18a,Large ribosomal subunit protein eL20-A
25Y
(V)
60S ribosomal protein L21-Apolymer16018279.31UniProt (Q02753)
Pfam (PF01157)
Saccharomyces cerevisiaeLarge ribosomal subunit protein eL21-A
26Z
(W)
60S ribosomal protein L22-Apolymer12113711.41UniProt (P05749)
Pfam (PF01776)
Saccharomyces cerevisiaeL1c,Large ribosomal subunit protein eL22-A,RP4,YL31
27AA
(X)
60S ribosomal protein L23-Apolymer13714494.01UniProt (P0CX41)
Pfam (PF00238)
Saccharomyces cerevisiaeL17a,Large ribosomal subunit protein uL14-A,YL32
28BA
(Y)
60S ribosomal protein L24-Apolymer15517661.71UniProt (P04449)
Pfam (PF01246)
Saccharomyces cerevisiaeL30,Large ribosomal subunit protein eL24-A,RP29,YL21
29CA
(Z)
60S ribosomal protein L25polymer14215787.61UniProt (P04456)
Pfam (PF03939)
Pfam (PF00276)
Saccharomyces cerevisiaeLarge ribosomal subunit protein uL23,RP16L,YL25,YP42'
30DA
(a)
60S ribosomal protein L26-Apolymer12714265.81UniProt (P05743)
Pfam (PF16906)
Pfam (PF00467)
Saccharomyces cerevisiaeL33,Large ribosomal subunit protein uL24-A,YL33
31EA
(b)
60S ribosomal protein L27-Apolymer13615568.41UniProt (P0C2H6)
Pfam (PF01777)
Saccharomyces cerevisiaeLarge ribosomal subunit protein eL27-A
32FA
(c)
60S ribosomal protein L28polymer14916761.71UniProt (P02406)
Pfam (PF00828)
Saccharomyces cerevisiaeL27a,L29,Large ribosomal subunit protein uL15,RP44,RP62,YL24
33GA
(d)
60S ribosomal protein L29polymer596691.91UniProt (P05747)
Pfam (PF01779)
Saccharomyces cerevisiaeLarge ribosomal subunit protein eL29,YL43
34HA
(e)
60S ribosomal protein L30polymer10511430.41UniProt (P14120)
Pfam (PF01248)
Saccharomyces cerevisiaeL32,Large ribosomal subunit protein eL30,RP73,YL38
35IA
(f)
60S ribosomal protein L31-Apolymer10912649.81UniProt (P0C2H8)
Pfam (PF01198)
Saccharomyces cerevisiaeL34,Large ribosomal subunit protein eL31-A,YL28
36JA
(g)
60S ribosomal protein L32polymer13014809.41UniProt (P38061)
Pfam (PF01655)
Saccharomyces cerevisiaeLarge ribosomal subunit protein eL32
37KA
(h)
60S ribosomal protein L33-Apolymer10712177.11UniProt (P05744)
Pfam (PF01247)
Saccharomyces cerevisiaeL37,Large ribosomal subunit protein eL33-A,RP47,YL37
38LA
(i)
60S ribosomal protein L34-Apolymer12113673.21UniProt (P87262)
Pfam (PF01199)
Saccharomyces cerevisiaeLarge ribosomal subunit protein eL34-A
39MA
(j)
60S ribosomal protein L35-Apolymer12013942.61UniProt (P0CX84)
Pfam (PF00831)
Saccharomyces cerevisiaeLarge ribosomal subunit protein uL29-A
40NA
(k)
60S ribosomal protein L36-Apolymer10011151.31UniProt (P05745)
Pfam (PF01158)
Saccharomyces cerevisiaeL39,Large ribosomal subunit protein eL36-A,YL39
41OA
(l)
60S ribosomal protein L37-Apolymer889877.41UniProt (P49166)
Pfam (PF01907)
Saccharomyces cerevisiaeL43,Large ribosomal subunit protein eL37-A,YL35,YP55
42PA
(m)
60S ribosomal protein L38polymer788845.61UniProt (P49167)
Pfam (PF01781)
Saccharomyces cerevisiaeLarge ribosomal subunit protein eL38
43QA
(n)
60S ribosomal protein L39polymer516358.61UniProt (P04650)
Pfam (PF00832)
Saccharomyces cerevisiaeL46,Large ribosomal subunit protein eL39,YL40
44RA
(o)
Ubiquitin-60S ribosomal protein L40polymer12814583.11UniProt (P0CH08)
Pfam (PF00240)
Pfam (PF01020)
Saccharomyces cerevisiae
45SA
(p)
60S ribosomal protein L41-Apolymer253354.21Saccharomyces cerevisiae
46TA
(r)
ribosomal protein RPL1polymer21017890.01Saccharomyces cerevisiae
47UA
(s)
60S ribosomal protein L10polymer22125410.51UniProt (P41805)
Pfam (PF00252)
Saccharomyces cerevisiaeL9,Large ribosomal subunit protein uL16,Ubiquinol-cytochrome C reductase complex subunit VI-requiring protein
48VA
(t)
N-terminal acetyltransferase A complex subunit NAT1polymer85499050.11UniProt (P12945)
Pfam (PF12569)
Saccharomyces cerevisiaeNatA complex subunit NAT1,Amino-terminal,alpha-amino,acetyltransferase 1
49WA
(u)
N-terminal acetyltransferase A complex catalytic subunit ARD1polymer23827635.21UniProt (P07347)
Pfam (PF00583)
Saccharomyces cerevisiaeNatA complex subunit ARD1,Arrest-defective protein 1
50XA
(v)
N-alpha-acetyltransferase NAT5polymer17619753.71UniProt (Q08689)
Pfam (PF00583)
Saccharomyces cerevisiaeNatA complex subunit NAT5
51YA
(z)
nascent polypeptide chainpolymer231975.41Saccharomyces cerevisiae
52ZA
(1)
4-{(2R)-2-[(1S,3S,5S)-3,5-dimethyl-2-oxocyclohexyl]-2-hydroxyethyl}piperidine-2,6-dionenon-polymer281.31Chemie (3HE)
Sequence viewer
Contents of the asymmetric unit
PolymersNumber of chains51
Total formula weight2145901.3
Non-Polymers*Number of molecules1
Total formula weight281.3
All*Total formula weight2146182.7
*Water molecules are not included.

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PDB entries from 2025-12-17

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