5Y6J
Structure of Tomato spotted wilt virus nucleocapsid protein with alternative oligomerization state
Summary for 5Y6J
| Entry DOI | 10.2210/pdb5y6j/pdb |
| Descriptor | Nucleoprotein (2 entities in total) |
| Functional Keywords | tswv, nucleocapsid protein, np, oligomerization, viral protein |
| Biological source | Tomato spotted wilt virus (TSWV) |
| Cellular location | Virion : H6UMW9 |
| Total number of polymer chains | 3 |
| Total formula weight | 86524.70 |
| Authors | |
| Primary citation | Guo, Y.,Liu, B.,Ding, Z.,Li, G.,Liu, M.,Zhu, D.,Sun, Y.,Dong, S.,Lou, Z. Distinct Mechanism for the Formation of the Ribonucleoprotein Complex of Tomato Spotted Wilt Virus. J. Virol., 91:-, 2017 Cited by PubMed Abstract: The (TSWV) belongs to the genus of the family and represents the sole plant-infecting group within bunyavirus. TSWV encodes a nucleocapsid protein (N) which encapsidates the RNA genome to form a ribonucleoprotein complex (RNP). In addition, the N has multiple roles during the infection of plant cells. Here, we report the crystal structure of the full-length TSWV N. The N features a body domain consisting of an N-lobe and a C-lobe. These lobes clamp a positively charged groove which may constitute the RNA binding site. Furthermore, the body domains are flanked by N- and C-terminal arms which mediate homotypic interactions to the neighboring subunits, resulting in a ring-shaped N trimer. Interestingly, the C terminus of one protomer forms an additional interaction with the protomer of an adjacent trimer in the crystal, which may constitute a higher-order oligomerization contact. In this way, this study provides insights into the structure and trimeric assembly of TSWV N, which help to explain previous functional findings, but also suggests distinct N interactions within a higher-order RNP. TSWV is one of the most devastating plant pathogens that cause severe diseases in numerous agronomic and ornamental crops worldwide. TSWV is also the prototypic member of the genus, which is the sole group of plant-infecting viruses in the bunyavirus family. This study determined the structure of full-length TSWV N in an oligomeric state. The structural observations explain previously identified biological properties of TSWV N. Most importantly, the additional homotypic interaction between the C terminus of one protomer with another protomer indicates that there is a distinct mechanism of RNP formation in the bunyavirus family, thereby enhancing the current knowledge of negative-sense single-stranded RNA virus-encoded N. TSWV N is the last remaining representative N with an unknown structure in the bunyavirus family. Combined with previous studies, the structure of TSWV N helps to build a complete picture of the bunyavirus-encoded N family and reveals a close evolutionary relationship between orthobunyavirus, phlebovirus, hantavirus, and tospovirus. PubMed: 28904194DOI: 10.1128/JVI.00892-17 PDB entries with the same primary citation |
| Experimental method | X-RAY DIFFRACTION (2.811 Å) |
Structure validation
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