5Y5W

Crystal structure of human Spindlin1 in complex with a histone H4K20(me3) peptide

Summary for 5Y5W

DescriptorSpindlin-1, Histone peptide H4K20(me3) (2 entities in total)
Functional Keywordsreader, histone, gene regulation
Biological sourceHomo sapiens (Human)
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Total number of polymer chains7
Total molecular weight111181.88
Authors
Wang, C.,Zang, J. (deposition date: 2017-08-10, release date: 2017-10-11, Last modification date: 2019-03-20)
Primary citation
Wang, C.,Zhan, L.,Wu, M.,Ma, R.,Yao, J.,Xiong, Y.,Pan, Y.,Guan, S.,Zhang, X.,Zang, J.
Spindlin-1 recognizes methylations of K20 and R23 of histone H4 tail
FEBS Lett., 592:4098-4110, 2018
PubMed: 30381828 (PDB entries with the same primary citation)
DOI: 10.1002/1873-3468.13281
MImport into Mendeley
Experimental method
X-RAY DIFFRACTION (3.3 Å)
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Structure validation

RfreeClashscoreRamachandran outliersSidechain outliersRSRZ outliers 0.31450 7.2% 2.3%MetricValuePercentile RanksWorseBetterPercentile relative to all X-ray structuresPercentile relative to X-ray structures of similar resolution

More Asymmetric unit images

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More Biological unit images

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Molmil generated image of 5y5w
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(*)In the case of coarse surface representation, the asymmetric unit is shown as red ribbon representation.
Coordinate files for Biological unit (5y5w.pdb1.gz [70.97 KB])
Coordinate files for Biological unit (5y5w.pdb2.gz [33.3 KB])
Coordinate files for Biological unit (5y5w.pdb3.gz [34.71 KB])
Coordinate files for Biological unit (5y5w.pdb4.gz [33.04 KB])
Coordinate files for Biological unit (5y5w.pdb5.gz [3.65 KB])
Coordinate files for Biological unit (5y5w.pdb6.gz [3.23 KB])
Coordinate files for Biological unit (5y5w.pdb7.gz [3.34 KB])