5XDS

Crystal structure of Mycobacterium tuberculosis HisB bound with an inhibitor

5XDS の概要

• エントリーDOI: 10.2210/pdb5xds/pdb
• 分子名称: Imidazoleglycerol-phosphate dehydratase, MANGANESE (II) ION, CHLORIDE ION, ... (5 entities in total)
• 機能のキーワード: mycobacterium tuberculosis, tuberculosis, imidazoleglycerol phosphate dehydratase, drug target, lyase-lyase inhibitor complex, lyase/lyase inhibitor
• 由来する生物種: Mycobacterium tuberculosis (strain ATCC 25618 / H37Rv)
• 細胞内の位置: Cytoplasm : P9WML9
• タンパク質・核酸の鎖数: 1
• 化学式量合計: 23934.99

構造登録者

Kumar, D.,Jha, B.,Ahangar, M.S.,Kumar, B.B. (登録日: 2017-03-29, 公開日: 2018-04-04, 最終更新日: 2023-11-22)

主引用文献

Kumar, D.,Jha, B.,Bhatia, I.,Ashraf, A.,Dwivedy, A.,Biswal, B.K.
Characterization of a triazole scaffold compound as an inhibitor of Mycobacterium tuberculosis imidazoleglycerol-phosphate dehydratase.
Proteins, 2021

PubMed Abstract: Mycobacterium tuberculosis (Mtb), the causative agent of human tuberculosis (TB), employs ten enzymes including imidazoleglycerol-phosphate dehydratase (IGPD) for de novo biosynthesis of histidine. The absence of histidine-biosynthesis in humans combined with its essentiality for Mtb makes the enzymes of this pathway major anti-TB drug targets. We explored the inhibitory potential of a small molecule β-(1,2,4-Triazole-3-yl)-DL-alanine (DLA) against Mtb IGPD. DLA exhibits an in vitro inhibitory efficacy in the lower micromolar range. Higher-resolution crystal structures of native and substrate-bound Mtb IGPD provided additional structural features of this important drug target. Crystal structure of IGPD-DLA complex at a resolution of 1.75 Å, confirmed that DLA locks down the function of the enzyme by binding in the active site pocket of the IGPD mimicking the substrate-binding mode to a high degree. In our biochemical study, DLA showed an efficient inhibition of Mtb IGPD. Furthermore, DLA also showed bactericidal activity against Mtb and Mycobacterium smegmatis and inhibited their growth in respective culture medium. Importantly, owing to the favorable ADME and physicochemical properties, it serves as an important lead molecule for further derivatizations.

PubMed: 34288118
DOI: 10.1002/prot.26181

実験手法

X-RAY DIFFRACTION (1.75 Å)