5M7F

Human porphobilinogen deaminase in complex with DPM cofactor

Summary for 5M7F

DescriptorPorphobilinogen deaminase, 3-[5-{[3-(2-carboxyethyl)-4-(carboxymethyl)-5-methyl-1H-pyrrol-2-yl]methyl}-4-(carboxymethyl)-1H-pyrrol-3-yl]propanoic acid, SULFATE ION, ... (4 entities in total)
Functional Keywordsporphobilinogen deaminase, heme biosynthesis, porphyria, hmbs, transferase
Biological sourceHomo sapiens (Human)
Cellular locationCytoplasm  P08397
Total number of polymer chains2
Total molecular weight81987.29
Authors
Pluta, P.,Millet, O.,Roversi, P.,Rojas, A.L.,Gu, S. (deposition date: 2016-10-27, release date: 2017-11-15)
Primary citation
Pluta, P.,Millet, O.,Roversi, P.,Rojas, A.L.,Gu, S.
Human Porphobilinogen deaminase in complex with DPM cofactor
To Be Published,
Experimental method
X-RAY DIFFRACTION (2.78 Å)
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Structure validation

RfreeClashscoreRamachandran outliersSidechain outliersRSRZ outliers0.281202.1%10.0%MetricValuePercentile RanksWorseBetterPercentile relative to all X-ray structuresPercentile relative to X-ray structures of similar resolution

More Asymmetric unit images

Molmil generated image of 5m7f
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Molmil generated image of 5m7f
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Molmil generated image of 5m7f
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More Biological unit images

Molmil generated image of 5m7f
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Molmil generated image of 5m7f
rotated about x axis by 90°
Molmil generated image of 5m7f
rotated about y axis by 90°
(*)In the case of coarse surface representation, the asymmetric unit is shown as red ribbon representation.
Coordinate files for Biological unit (5m7f.pdb1.gz [210.14 KB])
Coordinate files for Biological unit (5m7f.pdb2.gz [209.75 KB])
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