5L7F

Crystal structure of MMP12 mutant K421A in complex with RXP470.1 conjugated with fluorophore Cy5,5 in space group P21.

5L7F の概要

• エントリーDOI: 10.2210/pdb5l7f/pdb
• 関連するPDBエントリー: 4GQL 5CZM 5L79
• 関連するBIRD辞書のPRD_ID: PRD_000830
• 分子名称: Macrophage metalloelastase, ZINC ION, CALCIUM ION, ... (10 entities in total)
• 機能のキーワード: probes for optical imaging, mmp-12, metalloprotease, inflammation, aneurysm, fluorophore, cy5, 5, cyanine, hydrolase
• 由来する生物種: Homo sapiens (Human)
• タンパク質・核酸の鎖数: 2
• 化学式量合計: 39874.23

構造登録者

Tepshi, L.,Bordenave, T.,Rouanet-Mehouas, C.,Devel, L.,Dive, V.,Stura, E.A. (登録日: 2016-06-03, 公開日: 2016-09-14, 最終更新日: 2024-01-10)

主引用文献

Bordenave, T.,Helle, M.,Beau, F.,Georgiadis, D.,Tepshi, L.,Bernes, M.,Ye, Y.,Levenez, L.,Poquet, E.,Nozach, H.,Razavian, M.,Toczek, J.,Stura, E.A.,Dive, V.,Sadeghi, M.M.,Devel, L.
Synthesis and in Vitro and in Vivo Evaluation of MMP-12 Selective Optical Probes.
Bioconjug.Chem., 27:2407-2417, 2016

PubMed Abstract: In designing new tracers consisting of a small peptide conjugated to a reporter of comparable size, particular attention needs to be paid to the selection of the reporter group, which can dictate both the in vitro and the in vivo performances of the whole conjugate. In the case of fluorescent tracers, this is particularly true given the large numbers of available dye moieties differing in their structures and properties. Here, we have investigated the in vitro and in vivo properties of a novel series of MMP-12 selective probes composed of cyanine dyes varying in their structure, net charge, and hydrophilic character, tethered through a linker to a potent and specific MMP-12 phosphinic pseudopeptide inhibitor. The impact of linker length has been also explored. The crystallographic structure of one tracer in complex with MMP-12 has been obtained, providing the first crystal structure of a Cy5.5-derived probe and confirming that the binding of the targeting moiety is unaffected. MMP-12 remains the tracers' privileged target, as attested by their affinity selectivity profile evaluated in solution toward a panel of 12 metalloproteases. In vivo assessment of four selected probes has highlighted not only the impact of the dye structure but also that of the linker length on the probes' blood clearance rates and their biodistributions. These experiments have also provided valuable data on the stability of the dye moieties in vivo. This has permitted the identification of one probe, which combines favorable binding to MMP-12 in solution and on cells with optimized in vivo performance including blood clearance rate suitable for short-time imaging. Through this series of tracers, we have identified various critical factors modulating the tracers' in vivo behavior, which is both useful for the development and optimization of MMP-12 selective radiolabeled tracers and informative for the design of fluorescent probes in general.

PubMed: 27564088
DOI: 10.1021/acs.bioconjchem.6b00377

実験手法

X-RAY DIFFRACTION (1.8 Å)