5L0D

Human Metavinculin(residues 959-1130) in complex with PIP2

Summary for 5L0D

DescriptorVinculin, [(2R)-2-octanoyloxy-3-[oxidanyl-[(1R,2R,3S,4R,5R,6S)-2,3,6-tris(oxidanyl)-4,5-diphosphonooxy-cyclohexyl]oxy-phosphoryl]oxy-propyl] octanoate (3 entities in total)
Functional Keywords5-helix bundle, cytoskelatal protein, lipids, cell adhesion, structural protein
Biological sourceHomo sapiens (Human)
Cellular locationCell membrane ; Peripheral membrane protein ; Cytoplasmic side  P18206
Total number of polymer chains4
Total molecular weight78419.97
Authors
Chinthalapudi, K.,Izard, T. (deposition date: 2016-07-27, release date: 2016-08-31, Last modification date: 2016-09-07)
Primary citation
Chinthalapudi, K.,Rangarajan, E.S.,Brown, D.T.,Izard, T.
Differential lipid binding of vinculin isoforms promotes quasi-equivalent dimerization.
Proc.Natl.Acad.Sci.USA, 113:9539-9544, 2016
PubMed: 27503891 (PDB entries with the same primary citation)
DOI: 10.1073/pnas.1600702113
MImport into Mendeley
Experimental method
X-RAY DIFFRACTION (2.75 Å)
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Structure validation

RfreeClashscoreRamachandran outliersSidechain outliersRSRZ outliers0.2792300.2%6.8%MetricValuePercentile RanksWorseBetterPercentile relative to all X-ray structuresPercentile relative to X-ray structures of similar resolution

More Asymmetric unit images

Molmil generated image of 5l0d
no rotation
Molmil generated image of 5l0d
rotated about x axis by 90°
Molmil generated image of 5l0d
rotated about y axis by 90°

More Biological unit images

Molmil generated image of 5l0d
no rotation
Molmil generated image of 5l0d
rotated about x axis by 90°
Molmil generated image of 5l0d
rotated about y axis by 90°
(*)In the case of coarse surface representation, the asymmetric unit is shown as red ribbon representation.
Coordinate files for Biological unit (5l0d.pdb1.gz [57.36 KB])
Coordinate files for Biological unit (5l0d.pdb2.gz [56.87 KB])
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