5GVW

Crystal structure of the apo-form glycosyltransferase GlyE in Streptococcus pneumoniae TIGR4

Summary for 5GVW

Related5GVV
DescriptorGlycosyl transferase family 8, MANGANESE (II) ION (3 entities in total)
Functional Keywordsthe glycosyltransferase, serine-rich repeat protein, streptococcus pneumoniae, transferase
Biological sourceStreptococcus pneumoniae
Total number of polymer chains4
Total molecular weight190060.16
Authors
Jiang, Y.L.,Jin, H.,Zhao, R.L.,Yang, H.B.,Chen, Y.,Zhou, C.Z. (deposition date: 2016-09-07, release date: 2017-03-01, Last modification date: 2017-12-06)
Primary citation
Jiang, Y.L.,Jin, H.,Yang, H.B.,Zhao, R.L.,Wang, S.,Chen, Y.,Zhou, C.Z.
Defining the enzymatic pathway for polymorphic O-glycosylation of the pneumococcal serine-rich repeat protein PsrP.
J. Biol. Chem., 292:6213-6224, 2017
PubMed: 28246170 (PDB entries with the same primary citation)
DOI: 10.1074/jbc.M116.770446
MImport into Mendeley
Experimental method
X-RAY DIFFRACTION (2.4 Å)
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Structure validation

RfreeClashscoreRamachandran outliersSidechain outliersRSRZ outliers0.20231.3%3.0%0.6%MetricValuePercentile RanksWorseBetterPercentile relative to all X-ray structuresPercentile relative to X-ray structures of similar resolution

More Asymmetric unit images

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More Biological unit images

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(*)In the case of coarse surface representation, the asymmetric unit is shown as red ribbon representation.
Coordinate files for Biological unit (5gvw.pdb2.gz [137.69 KB])
Coordinate files for Biological unit (5gvw.pdb1.gz [136.47 KB])