5FXK

GluN1b-GluN2B NMDA receptor structure-Class Y

Summary for 5FXK

• Entry DOI: 10.2210/pdb5fxk/pdb
• Related: 5FXG 5FXH 5FXI 5FXJ
• EMDB information: 3356
• Descriptor: N-METHYL-D-ASPARTATE RECEPTOR GLUN1, N-METHYL-D-ASPARTATE RECEPTOR GLUN2B (2 entities in total)
• Functional Keywords: transport protein, signaling protein, nmda receptor, glutamate receptor, glun1, glun2b, ion channel
• Biological source: RATTUS NORVEGICUS (NORWAY RAT); More
• Total number of polymer chains: 4
• Total formula weight: 376303.61

Authors

Tajima, N.,Karakas, E.,Grant, T.,Simorowski, N.,Diaz-Avalos, R.,Grigorieff, N.,Furukawa, H. (deposition date: 2016-03-02, release date: 2016-05-11, Last modification date: 2024-05-08)

Primary citation

Tajima, N.,Karakas, E.,Grant, T.,Simorowski, N.,Diaz-Avalos, R.,Grigorieff, N.,Furukawa, H.
Activation of Nmda Receptors and the Mechanism of Inhibition by Ifenprodil.
Nature, 534:63-, 2016

PubMed Abstract: The physiology of N-methyl-d-aspartate (NMDA) receptors is fundamental to brain development and function. NMDA receptors are ionotropic glutamate receptors that function as heterotetramers composed mainly of GluN1 and GluN2 subunits. Activation of NMDA receptors requires binding of neurotransmitter agonists to a ligand-binding domain (LBD) and structural rearrangement of an amino-terminal domain (ATD). Recent crystal structures of GluN1-GluN2B NMDA receptors bound to agonists and an allosteric inhibitor, ifenprodil, represent the allosterically inhibited state. However, how the ATD and LBD move to activate the NMDA receptor ion channel remains unclear. Here we applied X-ray crystallography, single-particle electron cryomicroscopy and electrophysiology to rat NMDA receptors to show that, in the absence of ifenprodil, the bi-lobed structure of GluN2 ATD adopts an open conformation accompanied by rearrangement of the GluN1-GluN2 ATD heterodimeric interface, altering subunit orientation in the ATD and LBD and forming an active receptor conformation that gates the ion channel.

PubMed: 27135925
DOI: 10.1038/NATURE17679

Experimental method

ELECTRON MICROSCOPY (6.4 Å)