5FQE

The details of glycolipid glycan hydrolysis by the structural analysis of a family 123 glycoside hydrolase from Clostridium perfringens

Summary for 5FQE

Related5FQF 5FQG 5FQH 5FR0
DescriptorBETA-N-ACETYLGALACTOSAMINIDASE, FORMIC ACID, BROMIDE ION, ... (5 entities in total)
Functional Keywordshydrolase, glycoside hydrolase, gh123, glycosphingolipid, ganglioside, globoside, substrate- assisted catalysis.
Biological sourceCLOSTRIDIUM PERFRINGENS
Total number of polymer chains2
Total molecular weight151397.97
Authors
Noach, I.,Pluvinage, B.,Laurie, C.,Abe, K.T.,Alteen, M.,Vocadlo, D.J.,Boraston, A.B. (deposition date: 2015-12-10, release date: 2016-03-30, Last modification date: 2018-11-14)
Primary citation
Noach, I.,Pluvinage, B.,Laurie, C.,Abe, K.T.,Alteen, M.,Vocadlo, D.J.,Boraston, A.B.
The Details of Glycolipid Glycan Hydrolysis by the Structural Analysis of a Family 123 Glycoside Hydrolase from Clostridium Perfringens
J.Mol.Biol., 428:3253-, 2016
PubMed: 27038508 (PDB entries with the same primary citation)
DOI: 10.1016/J.JMB.2016.03.020
MImport into Mendeley
Experimental method
X-RAY DIFFRACTION (1.53 Å)
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Structure validation

RfreeClashscoreRamachandran outliersSidechain outliersRSRZ outliers 0.1926 0.2% 0.5% 1.0%MetricValuePercentile RanksWorseBetterPercentile relative to all X-ray structuresPercentile relative to X-ray structures of similar resolution

More Asymmetric unit images

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More Biological unit images

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Molmil generated image of 5fqe
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(*)In the case of coarse surface representation, the asymmetric unit is shown as red ribbon representation.
Coordinate files for Biological unit (5fqe.pdb2.gz [115.66 KB])
Coordinate files for Biological unit (5fqe.pdb1.gz [117.72 KB])