5DA6

Atomic resolution crystal structure of double-stranded RNA 32 base pairs long determined from random starting phases angles in the presence of pseudo translational symmetry using the direct methods program SIR2014.

Summary for 5DA6

Related5D99
DescriptorRNA (32-MER), POTASSIUM ION (3 entities in total)
Functional Keywordsrna editing substrate, double-stranded rna, direct methods structure determination, pseudo translational symmetry, rna
Biological sourceTrypanosoma brucei
Total number of polymer chains1
Total molecular weight10256.08
Authors
Mooers, B.H.M. (deposition date: 2015-08-19, release date: 2016-04-13, Last modification date: 2017-09-27)
Primary citation
Mooers, B.H.M.
Direct-methods structure determination of a trypanosome RNA-editing substrate fragment with translational pseudosymmetry
Acta Crystallogr.,Sect.D, 72:477-, 2016
DOI: 10.1107/S2059798316001224
MImport into Mendeley
Experimental method
X-RAY DIFFRACTION (1.05 Å)
?

Structure validation

RfreeClashscoreRSRZ outliersRNA backbone0.15706.2%0.86MetricValuePercentile RanksWorseBetterPercentile relative to all X-ray structuresPercentile relative to X-ray structures of similar resolution

More Asymmetric unit images

Molmil generated image of 5da6
no rotation
Molmil generated image of 5da6
rotated about x axis by 90°
Molmil generated image of 5da6
rotated about y axis by 90°

More Biological unit images

Molmil generated image of 5da6
no rotation
Molmil generated image of 5da6
rotated about x axis by 90°
Molmil generated image of 5da6
rotated about y axis by 90°
(*)In the case of coarse surface representation, the asymmetric unit is shown as red ribbon representation.
Coordinate files for Biological unit (5da6.pdb1.gz [104.28 KB])